SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4132

Length: 1611 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4132

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NKT0_PICSI	-	-	91%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-
Sma3	Proteasome endopeptidase complex, beta subunit	IPR016295	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G56450.1	PBG1 20S proteasome beta subunit G1 chr1:21141970-21144186 FORWARD LENGTH=246	79%
RefSeq	Arabidopsis thaliana	NP_176040.1	proteasome subunit beta type-4 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002324245.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT0

Fln msg:

Fln protein: MLAAGRKDEKNEQALKNHVGHPQTGKDCAFTLLGSPITHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIIRYLDELILYDNMWDDGNSLGPKEVHNYLNRLMYNRRNKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAMKTHWELEAFKNPATGAVGSW*

Protein Length: 264

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGGGTCGAAAAGAAAAAGTTGCGTGAATGACCTTTATTTCTTTAAGTTCTGTTTGAGCATTTGGGTTTTCTTGGCGGAAGAGCAACGTGCGTTACTACAGTTCTGAGTTATCGATCTGAGTTTTGGGCAGCAACCATTCTGGATACAGTTGTTTGAGCTCTCTTAATAGAGTTGTAAAG_-_ATGTTGGCAGCGGGTCGGAAGGATGAAAAGAATGAGCAGGCTCTGAAAAATCACGTGGGTCATCCGCAAACAGGCAAAGATTGCGCATTTACACTTCTCGGCTCTCCTATCACTCATACCCAGTATCCATATGTAACTGGTACATCAGTCTTGGGTATTAAGTATAAAGATGGAGTTTTGCTGGCATCAGACATGGGAGGATCGTATGGATCTACCTTACGTTACAAGAGTGTCCAGAGATTGAAGCCTATTGGTAAACACACTCTCTTGGGTGCTGGTGGAGAAATAAGTGATTTCCAGGAGATAATACGTTATCTTGATGAACTCATACTTTATGACAACATGTGGGATGATGGCAACTCCTTGGGTCCTAAAGAAGTACACAACTATCTCAATCGGTTGATGTACAACAGGCGAAATAAATTCAATCCTTTGTGGAACACACTTGTTCTGGGTGGAGTCAAGAATGGTCAGAAATACCTGGGCACGGTCAATATGATAGGGGTGCATTATGAGGAGAACCATGTGGCTACTGGATTTGGTAATCATCTTGCTAGGCCAATTTTCCGTGATGAATGGCACGAGGATATGACCTTTGAAGAAGGTGTCAAGCTTCTGGAAAAGTGCATGCTTGTGCTTTTATATCGTGATCGGTCAGCTGTTAACAAACTACAGATAGCAAAGATCACAGAAGAAGGAGCCACAATTTCTGAACCATATGCTATGAAAACACATTGGGAACTTGAGGCATTCAAGAATCCAGCTACAGGAGCTGTAGGTTCGTGGTAA___TGAGAAACAGTGGTTTTGCAGTTGTCTCAATTGCCGAGACTAAATGAAGATTTCAATATACTTCAAATATGAATGGCCAGGCTGAAATCCGAGTTCTTACTCATTTTTAAGTATCAAACACAGGCCCCTTTAGTTATCCTGGAGTCGGATGTTGAAGCAAATATGAGTTAGCTGCATTTCAATTTATTTATGTTGAAGGACATCATAAAATGATAGAGATTTCGAATGGTCAACTTTGTAATGCTTTTAATAATTATATTTTATTTTCTTGAGTTAAACATGAAGCTTTAAATGCTAATTTTAATAACATTTTCAACGACATAAAAATGGGTTCTTGTTCACTCTGCAGGAATCTATTCACTAGTAGGAACATATATTGAACATTTGCTTTGGTAGGCTCTGTTTTGTTGTTAAACGAGATGTCTCCCTAGCTTAGGCTTTGGGGATGAAACGATTGTAGAATGACATCTATAAGACATAGATGTGTAATGAATCACATTCCACACATGGCATTATGCACTGAATATTTGTTATCAGTAGTAATATGCGCTGAATATTTGAAATTGTGCCTTTAGGACCCGTAACTCTATAGTTCATTTGCGTTAGT

Fln Alignment:

Contig4132___MLAAGRKDEKNEQALKNHVGHPQTGKDCAFTLLGSPITHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIIRYLDELILYDNMWDDGNSLGPKEVHXXXXXXXXXXXXKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAMKTHWELEAFKNPATGAVGSW
A9NKT0______________MLAAAQKDEKKDQALKNHVGHPQTGRDCPFTLLNSPISHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLLGAGGEISDFQEIVRYLDELILYDNMWDDGNSLGPKEVHNYLNRLMYNRRNKFNPLWNTLVLGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTFEEGVKLLEKCMLVLLYRDRSAVNKLQIAKITEEGATISEPYAIKTHWELEAFKNPATGAVGSW

SNPs (tot: 3)

Position	C %	T %	Probability
1511	72	28	1.0
1528	21	78	1.0
1541	14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain