SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4126

Length: 1157 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene4126 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BZIP domain class transcription factor n=2 Tax=Malus x domestica RepID=D9ZIQ3_MALDO	-	-	3.99931e-42	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	BZIP transcription factor	-	-	1.349e-14	-

Source	Gene names
Sma3	ABF; ABF2; ABF2-1; ABF2-2; ABF3; ABFB; ABI5; AREB; AREB1; AREB2; AREB3; At2g36270; At2g41070; At3g44460; At3g56850; At4g34000/At4g34010; At4g35900; B1274F11.25; BZIP12; BZIP14; BZIP37; BZIP39; BZIP66; BZIP67; DLF1; DPBF-2; DPBF1; DPBF2; DPBF3; DPBF4; DPBF

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	photoperiodism	GO:0009648	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	negative regulation of seed germination	GO:0010187	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0043193	Biological Process	-
Sma3	seed development	GO:0048316	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Histidine triad (HIT) protein	IPR001310	-	-
Sma3	cAMP response element binding (CREB) protein	IPR001630	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Phosphatidylethanolamine-binding protein PEBP	IPR008914	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Basic leucine zipper	IPR011700	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G56850.1	AREB3, DPBF3 ABA-responsive element binding protein 3 chr3:21046554-21047894 REVERSE LENGTH=297	4.0e-39	74%
RefSeq	Arabidopsis thaliana	NP_191244.1	abscisic acid-insensitive 5-like protein 2 [Arabidopsis thaliana]	5.0e-39	74%
RefSeq	Populus trichocarpa	XP_002311917.1	predicted protein [Populus trichocarpa]	0.0	63%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
424	10		90		0.90298
445		11		88	0.923564
569	88			11	0.923564
570		88	11		0.923564
571	11	88			0.923564
573		88	11		0.923564
604		11		88	0.999937
605	5	44	5	44	1.0
681		40		60	1.0
713	10			90	0.90298
714		10	90		0.90298
715	88		11		0.923564
718		88	11		0.923564
727		12	87		0.992554
728	87	12			0.992554
730			87	12	0.992554
742		16	83		0.994512
743		16		83	0.994512
744		16		83	0.994512
745	16		83		0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
1121	1135	TTG TTG TTG TTG TTG	15
1134	1157	TGC TGC TGC TGC TGC TGC TGC TGC	24

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain