SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4124

Length: 2603 nt

UniGene Fasta

>sp_v3.0_unigene4124
GGCTAACCGAAGGAATATAGGCATGGTTTCAGGCTTGGCAAAGGTACAGAGGCACAGAGCTGGCCGTGCAAGGAGCAGGTGGATTCCATCCATGGGGAAGTCCAAAACGAATGATCAAAAGCGTAATTAGTACAGAGATCGACACTTGTAGCCCTAAAACAGTGACAGGATTCTGTAGCTACTATATACGCCGCTAACAGGACTTGGAACTACGGTGGCTAAATTTGTCGAGTTGCTTCTGTTTCTGGCGTTAGGCCGTGCTGCTTTGGCCAGCCATTGACAGGAATCTGGGCAGCTCCTACCTTCGTTTCTTACAAGCAACTCGCCAGGTGTTAATTGACGGTGATCATGGAAGAATTTCCCCACCATTGGGTTTGATGACGGTGTCGTAAAAAAGCTGCTTCTGCTGCGATTATGGTCTAAGACACAGAAAGTTTTGCCGTCAACCACGGGCGGAAGGACTGAGGCATGGGGTCGCTGTAGGGCAGAGGCGAGGCGCTCGAGTGAAATTATTAATTTTATGGTGGAGTGAAATATTTTTCAACAGTGCGAAAGCATGGGTTGTTGCCCTTCAAGGCATTATCTCTCACCCCCTCCCAAGGAACAGGTTGTAGAAAGCACGAGGCTTGAAGAAAATGGAGATGATCCTGAACCTGATTCTATTCCACCATTCACAGAGTATTCTCTTGAGGAGCTCAGAGCTGCTACAAATTACTTCAACTCTGATAATATTGTGTCCGAAAGTGGAGAGAAGGCTCCCAATGTTGTCTATAAGGGAAGAATGGATAACAATCGGTGGATTGCAGTGAAAAAGTTTCCCAAAGTAGCTTGGCCTGATGCCAAACAGTTTGTGGATGAAGCCTGGGGAGTTGGGCGGCTGCGGCATGAGAGACTGGTCAATTTAATAGGGTATTGCTGTGAAGGAGATGAACGGCTTTTAGTTGCAGAGTACATGCCTAATGACACACTTGTAAAACATCTTTTTCACTGGGAGAAGCAGACAATGGAATGGGCTATGCGTTTGAGAGTTGCCCTTTACATTGCTCAAGCCTTAGAGCATTGTAGTAATGAAGGCCGACCCCTGTACCATGACTTAAATGCCTACAGGGTGCTTTTTGATCAGGAGGGGGACCCTCGTCTTTCATGCTTCGGGCTTATGAAAAACAGCAGAGATGGAAAGAGCTACAGCACAAATCTTGCCTACACACCTCCTGAATATCTAAGAACTGGAAGGGTCACACCTGAAAGCGTTATCTACAGTTATGGCACTGTTCTTTTGGATCTCTTAAGTGGAAAGCACATTCCTCCCAGCCATGCTCTTGATTTGATACGGGGAAAAAATATGCTACTACTAATGGATTCCCACTTAGAAGGGAAATTTCCAACAGAAGAAGGAACTGAGCTTGTGCGCATTGCTTCACGTTGTTTACAATATGAGCCACGTGAGAGGCCTAATCCAAAGACGCTTGTAGCTGTTTTGACACCTCTGCAGCAGAGGTCAGAGGTACCATCTCATGTCATGATGGCTATAACAAGACAGGAAACAACACCGCCATCTCCACAAATTCCACTTTCTCAGTTGGGAGAAGCCTGTGCTAGAATGGATTTGACTGCAATGCATCAGATAATGGTCATGATGCATTACAAGGATGATGAAGGTACTAATGAGTTATCTTTCCAAGAGTGGACACAGCAAATGCAGGATATGCTAAATGCAAGGAAACATGGTGATGTTGCTTTTCGTGAAAAAGACTTTAAGACAGCCATAGACTATTACGCCCAGTTTATAGAGGTTGGGACCATGGTATCCCCTACTGTTTATGCAAGGAGGAGTCTAGCATATCTTCTTTGCGATCAACCAGATGCTGCTCTTCGTGATGCAATGCAAGCACAATGTGTATACCCTGACTGGCCAACTGCATTTTACATGCAAGCGGCTGCACTTACTAAACTTAACATGCACAAGGATGCTGCTGACATGTTAAAAGAAGGGGCCGCACTGGAGGAAAAGCGACAAGCAGCAAGAGGTTCCTAGAAAAGCATCAATTTTGACATACACAAATCTGATGAACTGTTTTTAGTTGTACCTGACACTCGAATGAACGATGCAATCTTCTTGTGTCATTTTGTTGGCAATCACATTTGCCACGTTATGGAACAGGTATAGTTCCATAACTTTATAGTAGCATATCTATCTTAGTAATGCACAATATTTATTATTCTTTCGGGATATACAAGAAGAGGATTATTATGATAGAACTACAACCACTTCTGGCAGGGAGTTTGGTGCTCATTTTAAGAGAGTGTTCATAAATGTGAAGGTGATACCCCTAAGTTATGCATATTGTAACCAGAATTTCTCATGGCACTCAAGTCACTGTATTGTTGGCCGAAGGTCCATTATTATATTGTGTCCATTTTAAGGTTGTAGTGATGTTTCTTATGATTTCCGGGAGTGAGTAATCTTTTGTGTGAGAATATGCTTCAATTCTGGGAATATTTCTCATTCCAGCATTCTGTTGGATGACAATTATGAGATGCAGATCATGAATATGTCTTGCTATTCCCAACCCATCAAAAATGATATTACGAAAGTTCCTATT

Ace file of the UniGene sp_v3.0_unigene4124

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BR-signaling kinase 1 [Arabidopsis thaliana] sp\|Q944A7.1\|Y4523_ARATH RecName: Full=Probable serine/threonine-protein kinase At4g35230 gb\|AAL27496.1\|AF439824_1 AT4g35230/F23E12_210 [Arabidopsis thaliana] gb\|AAM98327.1\| At4g35230/F23E12_210 [Arabidopsis tha	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Receptor protein kinase, putative	-	-	2.118e-20	-

Source	Gene names
Sma3	ACRE261; AT4g00710; At2g17090; At2g17170; At3g09240; At3g54030; At3g54030/F5K20_330; At4g00710; At4g00710/F6N23.9; At4g35230; At5g01060; At5g41260; At5g46570; At5g59010; F23E12.210; F3L24.11; F5K20_330; F6N23.9; F7J8_40; F8A12.21; GSVIVT00000416001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Pyruvate kinase, active site	IPR018209	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35230.1	BSK1 BR-signaling kinase 1 chr4:16755325-16758041 REVERSE LENGTH=512	73%
RefSeq	Arabidopsis thaliana	NP_567980.1	BR-signaling kinase 1 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002306223.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S6

Fln msg:

Fln protein: MGCCPSRHYLSPPPKEQVVESTRLEENGDDPEPDSIPPFTEYSLEELRAATNYFNSDNIVSESGEKAPNVVYKGRMDNNRWIAVKKFPKVAWPDAKQFVDEAWGVGRLRHERLVNLIGYCCEGDERLLVAEYMPNDTLVKHLFHWEKQTMEWAMRLRVALYIAQALEHCSNEGRPLYHDLNAYRVLFDQEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNMLLLMDSHLEGKFPTEEGTELVRIASRCLQYEPRERPNPKTLVAVLTPLQQRSEVPSHVMMAITRQETTPPSPQIPLSQLGEACARMDLTAMHQIMVMMHYKDDEGTNELSFQEWTQQMQDMLNARKHGDVAFREKDFKTAIDYYAQFIEVGTMVSPTVYARRSLAYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQAAALTKLNMHKDAADMLKEGAALEEKRQAARGS*

Protein Length: 494

Fln nts: GGCTAACCGAAGGAATATAGGCATGGTTTCAGGCTTGGCAAAGGTACAGAGGCACAGAGCTGGCCGTGCAAGGAGCAGGTGGATTCCATCCATGGGGAAGTCCAAAACGAATGATCAAAAGCGTAATTAGTACAGAGATCGACACTTGTAGCCCTAAAACAGTGACAGGATTCTGTAGCTACTATATACGCCGCTAACAGGACTTGGAACTACGGTGGCTAAATTTGTCGAGTTGCTTCTGTTTCTGGCGTTAGGCCGTGCTGCTTTGGCCAGCCATTGACAGGAATCTGGGCAGCTCCTACCTTCGTTTCTTACAAGCAACTCGCCAGGTGTTAATTGACGGTGATCATGGAAGAATTTCCCCACCATTGGGTTTGATGACGGTGTCGTAAAAAAGCTGCTTCTGCTGCGATTATGGTCTAAGACACAGAAAGTTTTGCCGTCAACCACGGGCGGAAGGACTGAGGCATGGGGTCGCTGTAGGGCAGAGGCGAGGCGCTCGAGTGAAATTATTAATTTTATGGTGGAGTGAAATATTTTTCAACAGTGCGAAAGC_-_ATGGGTTGTTGCCCTTCAAGGCATTATCTCTCACCCCCTCCCAAGGAACAGGTTGTAGAAAGCACGAGGCTTGAAGAAAATGGAGATGATCCTGAACCTGATTCTATTCCACCATTCACAGAGTATTCTCTTGAGGAGCTCAGAGCTGCTACAAATTACTTCAACTCTGATAATATTGTGTCCGAAAGTGGAGAGAAGGCTCCCAATGTTGTCTATAAGGGAAGAATGGATAACAATCGGTGGATTGCAGTGAAAAAGTTTCCCAAAGTAGCTTGGCCTGATGCCAAACAGTTTGTGGATGAAGCCTGGGGAGTTGGGCGGCTGCGGCATGAGAGACTGGTCAATTTAATAGGGTATTGCTGTGAAGGAGATGAACGGCTTTTAGTTGCAGAGTACATGCCTAATGACACACTTGTAAAACATCTTTTTCACTGGGAGAAGCAGACAATGGAATGGGCTATGCGTTTGAGAGTTGCCCTTTACATTGCTCAAGCCTTAGAGCATTGTAGTAATGAAGGCCGACCCCTGTACCATGACTTAAATGCCTACAGGGTGCTTTTTGATCAGGAGGGGGACCCTCGTCTTTCATGCTTCGGGCTTATGAAAAACAGCAGAGATGGAAAGAGCTACAGCACAAATCTTGCCTACACACCTCCTGAATATCTAAGAACTGGAAGGGTCACACCTGAAAGCGTTATCTACAGTTATGGCACTGTTCTTTTGGATCTCTTAAGTGGAAAGCACATTCCTCCCAGCCATGCTCTTGATTTGATACGGGGAAAAAATATGCTACTACTAATGGATTCCCACTTAGAAGGGAAATTTCCAACAGAAGAAGGAACTGAGCTTGTGCGCATTGCTTCACGTTGTTTACAATATGAGCCACGTGAGAGGCCTAATCCAAAGACGCTTGTAGCTGTTTTGACACCTCTGCAGCAGAGGTCAGAGGTACCATCTCATGTCATGATGGCTATAACAAGACAGGAAACAACACCGCCATCTCCACAAATTCCACTTTCTCAGTTGGGAGAAGCCTGTGCTAGAATGGATTTGACTGCAATGCATCAGATAATGGTCATGATGCATTACAAGGATGATGAAGGTACTAATGAGTTATCTTTCCAAGAGTGGACACAGCAAATGCAGGATATGCTAAATGCAAGGAAACATGGTGATGTTGCTTTTCGTGAAAAAGACTTTAAGACAGCCATAGACTATTACGCCCAGTTTATAGAGGTTGGGACCATGGTATCCCCTACTGTTTATGCAAGGAGGAGTCTAGCATATCTTCTTTGCGATCAACCAGATGCTGCTCTTCGTGATGCAATGCAAGCACAATGTGTATACCCTGACTGGCCAACTGCATTTTACATGCAAGCGGCTGCACTTACTAAACTTAACATGCACAAGGATGCTGCTGACATGTTAAAAGAAGGGGCCGCACTGGAGGAAAAGCGACAAGCAGCAAGAGGTTCCTAG___AAAAGCATCAATTTTGACATACACAAATCTGATGAACTGTTTTTAGTTGTACCTGACACTCGAATGAACGATGCAATCTTCTTGTGTCATTTTGTTGGCAATCACATTTGCCACGTTATGGAACAGGTATAGTTCCATAACTTTATAGTAGCATATCTATCTTAGTAATGCACAATATTTATTATTCTTTCGGGATATACAAGAAGAGGATTATTATGATAGAACTACAACCACTTCTGGCAGGGAGTTTGGTGCTCATTTTAAGAGAGTGTTCATAAATGTGAAGGTGATACCCCTAAGTTATGCATATTGTAACCAGAATTTCTCATGGCACTCAAGTCACTGTATTGTTGGCCGAAGGTCCATTATTATATTGTGTCCATTTTAAGGTTGTAGTGATGTTTCTTATGATTTCCGGGAGTGAGTAATCTTTTGTGTGAGAATATGCTTCAATTCTGGGAATATTTCTCATTCCAGCATTCTGTTGGATGACAATTATGAGATGCAGATCATGAATATGTCTTGCTATTCCCAACCCATCAAAAATGATATTACGAAAGTTCCTATT

Fln Alignment:

Contig4124___MGCCPSRHYLSPPPKEQVVESTRL-EENGDDPEPDSIPPFTEYSLEELRAATNYFNSDNIVSESGEKAPNVVYKGRMDNNRWIAVKKFPKVAWPDAKQFVDEAWGVGRLRHERLVNLIGYCCEGDERLLVAEYMPNDTLVKHLFHWEKQTMEWAMRLRVALYIAQALEHCSNEGRPLYHDLNAYRVLFDQEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNMLLLMDSHLEGKFPTEEGTELVRIASRCLQYEPRERPNPKTLVAVLTPLQQRSEVPSHVMMAITRQETTPPSPQIPLSQLGEACARMDLTAMHQIMVMMHYKDDEGT-NELSFQEWTQQMQDMLNARKHGDVAFREKDFKTAIDYYAQFIEVGTMVSPTVYARRSLAYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQAAALTKLNMHKDAADMLKEGAALEEKR
D5A9S6______________MGCLQSKTSNMPTPDEESVENEKPNQENDDQFETERVPSFKEYALADLKAATRGFSSEYIVSEGGEKAPNVVFKGKLENNRWIAVKRFPKQSWPDARQFAAEAAGVGRVRHKRLVNLIGFCSEADERLLVAEFMPYDTLSKHLFHWEKQPMPWAMRLRVAYYIAQALDHCNSENHRIYHDLNTYRVLFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLVLMDSSLDGQYANEDATELVGLASRCLQSEPRDRPNAKFLVTALAPLQMQIEVPSDVLMGITKVTASLP---VMLSPLGKACARMDLTAVHDVLVKTGYKDDEGAENELSFQEWTQQVQEMLNMKKCGDIAFRDKDFKTAIEYYSKLVNVMTIPSPTVFARRSLAYLMSDQPQLALRDAMQAQVCQPEWPTAFYMQAISLAKLGMERDSQDMLREGATLEAKK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
720		28		71	1.0
1117		10		90	0.90298
1181	83		16		0.999991
2435	18		81		0.999994
2436	18			81	0.999994
2437	18		81		0.999994
2439	18			81	0.999994
2440	11		88		0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain