SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4112

Length: 2073 nt

UniGene Fasta

>sp_v3.0_unigene4112
ATCCAACTAAACAGAGAAGCAACATTTCTCTTGGTGTTTGAACATTTTAAAAAAGAAAATGAACAGATAATGTCTGGACTCAGATCTCATCCAAAGTCTCTCTTCCTCTATTTGAAGACCATAATTGGTGTTCATTCAAATGGTATCCTTCAATATCCAACGGCACCACTAGAAGGCAATTCAGAAATATCTCTTTTTGGGATGAGGGGATTGGATCAGTCCAGGGAACTTCAAAATTATTTGGATAGAATCTCCACTTTACCTGAACTACTCCGACGTGATGGCATTGAAGTAACAGATGAGATGGCGGAGCTATATCTTGAGCTTTTGTGCCAGTTTGAGCCAAAATCAGTTTTGAAGTTCCTAGAGAGTTTTGAGAATTACAGGCTGGAGCACTGTTTGAGATTATGCCAGGAATATGGAGTTACTGATGCAGCTGCATTTTTATTGGAACGTGTTGGTGATGTTGGAAGTGCTTTGTCACTCATAATAGCTGATATCGATGTGAGAATACAGGAAATGGACAGTGCAGTGGCAAATGCATTTGTGAAGTCTACATCCGCTATTACTTCTGAGGAGAAGCAGTTGAATGTGGTTTTGACGATGCCAGAGGTTGAGACTGTGCAAGCAATTCTGTGTGCTGCTGTTGGTCTCTGCCAACGCAATACGTTGAGGCTAGATCCTCAAGAGTCCGAGTCCCTCTGGTTTTCTCTCCTTGATACGTTTAGTGATCCTTCACGGAATTTGTACAACTATGAGAAGTCTTTAAGAAAGGAAAATGGACATTGTAATAAATCTAAAACGGGGCAAAATGTGAAAGCCTCACTCAGATGGAAAGTCTTAGAGGTTGGTGATGCTGCATACCTTTTGCGAAAGGTATTTGCACATTTCGTAGGTGAAATTATTGAAGGTATGGTGGGTTATGTACCTCTTCCAATGATCATGGGAAAACTTTTATCTGATAATGGAAATCAAAGAATTTGGGGACTTCAAGGCGACCATTCTAGGAATGCTGGGAACCTATGGTTACGAGCGAACAATTCTGGATACTGCAAAAAACTTGATAGAGGATGATACTTATTACAACATAGGCATGCTCAAAAAGGGTGCATCGCATGCATATGCACCAGCGAGTTCATACTGCTGTAAATGTGGGCGAGCACTGGATAAGGAGTCTTTTGGCTCAAGCATCTGCATTTTCCATTGTGGTCATGCAACCCATTTGCAGTGTGAAACTCAGGATTCAAAAACACCTTCAAAAGATTCTAGTGCAGGATGTCCAATTTGCATACCAAAGAAGAGGTCTTCTCCTAGCTAGAAATAAAATGATTGCAGTTTGGAATAAGAATGTGAAAGTGCCTAGCGACAGTATACAAATTCAAGCTCTCAGTGCCAAATCTACATATGAAAATGCAATTACTGAAAGGCCATATGGTCTTCATCAACAATCACGGTTTGAATTGTTGAGTAGCCTGCATAAAGGTGAAAAGTCACTTGAAGTAGGTCTGCTGCCTAATTTGAGGCTAGCACCTCCTTTAGTTTATCATGATCACAAGGCTCATAAGAGTAGCCATCTGAGTAAAGGGGAGACTAGCAATGGAAAGTTGAAAAATGGCGATTTAATTGTAGCTCAGAGAACCAAGGGTTCTTTGCCGTTTCAATTCCCTTTAACTTCAAGCATTTTTGGTACCAATAAAAGCAGGAAACGCTAATGTAGAGGCATTCTTTGTTTAGCCCAACTGCAAAAGCAGATTACTTGCAGAAAGCTGTAATGTAATATATAAAAGAATCTTAAAATTCTGTGAGTTATTTTGTGAAAAATTGAGCTGATTGTTTATTTTTGAAGCCATTAATTCCATAAGTAGGGATTATGGCGAGAAATCCTGGCAAGGTTTTTTTTTTTTTTAAACCTAGATATATTCTTGGAGGCAACATGCCACAATTCCTGTAATATCAACATGTATTTTAATTTCTTTCTTTAGCTTTGCTGCAATGAAGTCAAACTGGCTAGCTGCATGGAGTTTAGTTTCTATTGACTTAAGATATACCAGTTGATGTGTTTTGAAAAAGGCA

Ace file of the UniGene sp_v3.0_unigene4112

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	binding / protein binding / zinc ion binding	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	48%

Source	Gene names
Sma3	AT4g00790; A_TM018A10.24; At4g00790; GSVIVT00026165001; Os02g0124700; OsI_05666; OsJ_05198; P0575F10.31; POPTRDRAFT_774563; RCOM_1339640;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9RNK2

Fln msg: Overlapping hits, possible frame ERROR between 975 and 974, query STOP codon too far from subject stop. Distance to subject end: 134 aas, putative chimeric sequence, your sequence is shorter than subject: 440 - 1899

Fln protein: IQLNREATFLLVFEHFKKENEQIMSGLRSHPKSLFLYLKTIIGVHSNGILQYPTAPLEGNSEISLFGMRGLDQSRELQNYLDRISTLPELLRRDGIEVTDEMAELYLELLCQFEPKSVLKFLESFENYRLEHCLRLCQEYGVTDAAAFLLERVGDVGSALSLIIADIDVRIQEMDSAVANAFVKSTSAITSEEKQLNVVLTMPEVETVQAILCAAVGLCQRNTLRLDPQESESLWFSLLDTFSDPSRNLYNYEKSLRKENGHCNKSKTGQNVKASLRWKVLEVGDAAYLLRKVFAHFVGEIIEGMVGYVPLPMIMGKLLSDNGNxxEFGDFKATILGMLGTYGYERTILDTAKNLIEDDTYYNIGMLKKGASHAYAPASSYCCKCGRALDKESFGSSICIFHCGHATHLQCETQDSKTPSKDSSAGCPICIPKKRSSPS*

Protein Length: 441

Fln nts: ATCCAACTAAACAGAGAAGCAACATTTCTCTTGGTGTTTGAACATTTTAAAAAAGAAAATGAACAGATAATGTCTGGACTCAGATCTCATCCAAAGTCTCTCTTCCTCTATTTGAAGACCATAATTGGTGTTCATTCAAATGGTATCCTTCAATATCCAACGGCACCACTAGAAGGCAATTCAGAAATATCTCTTTTTGGGATGAGGGGATTGGATCAGTCCAGGGAACTTCAAAATTATTTGGATAGAATCTCCACTTTACCTGAACTACTCCGACGTGATGGCATTGAAGTAACAGATGAGATGGCGGAGCTATATCTTGAGCTTTTGTGCCAGTTTGAGCCAAAATCAGTTTTGAAGTTCCTAGAGAGTTTTGAGAATTACAGGCTGGAGCACTGTTTGAGATTATGCCAGGAATATGGAGTTACTGATGCAGCTGCATTTTTATTGGAACGTGTTGGTGATGTTGGAAGTGCTTTGTCACTCATAATAGCTGATATCGATGTGAGAATACAGGAAATGGACAGTGCAGTGGCAAATGCATTTGTGAAGTCTACATCCGCTATTACTTCTGAGGAGAAGCAGTTGAATGTGGTTTTGACGATGCCAGAGGTTGAGACTGTGCAAGCAATTCTGTGTGCTGCTGTTGGTCTCTGCCAACGCAATACGTTGAGGCTAGATCCTCAAGAGTCCGAGTCCCTCTGGTTTTCTCTCCTTGATACGTTTAGTGATCCTTCACGGAATTTGTACAACTATGAGAAGTCTTTAAGAAAGGAAAATGGACATTGTAATAAATCTAAAACGGGGCAAAATGTGAAAGCCTCACTCAGATGGAAAGTCTTAGAGGTTGGTGATGCTGCATACCTTTTGCGAAAGGTATTTGCACATTTCGTAGGTGAAATTATTGAAGGTATGGTGGGTTATGTACCTCTTCCAATGATCATGGGAAAACTTTTATCTGATAATGGAAATxxxxxxGAATTTGGGGACTTCAAGGCGACCATTCTAGGAATGCTGGGAACCTATGGTTACGAGCGAACAATTCTGGATACTGCAAAAAACTTGATAGAGGATGATACTTATTACAACATAGGCATGCTCAAAAAGGGTGCATCGCATGCATATGCACCAGCGAGTTCATACTGCTGTAAATGTGGGCGAGCACTGGATAAGGAGTCTTTTGGCTCAAGCATCTGCATTTTCCATTGTGGTCATGCAACCCATTTGCAGTGTGAAACTCAGGATTCAAAAACACCTTCAAAAGATTCTAGTGCAGGATGTCCAATTTGCATACCAAAGAAGAGGTCTTCTCCTAGCTAGAAATAAAATGATTGCAGTTTGGAATAAGAATGTGAAAGTGCCTAGCGACAGTATACAAATTCAAGCTCTCAGTGCCAAATCTACATATGAAAATGCAATTACTGAAAGGCCATATGGTCTTCATCAACAATCACGGTTTGAATTGTTGAGTAGCCTGCATAAAGGTGAAAAGTCACTTGAAGTAGGTCTGCTGCCTAATTTGAGGCTAGCACCTCCTTTAGTTTATCATGATCACAAGGCTCATAAGAGTAGCCATCTGAGTAAAGGGGAGACTAGCAATGGAAAGTTGAAAAATGGCGATTTAATTGTAGCTCAGAGAACCAAGGGTTCTTTGCCGTTTCAATTCCCTTTAACTTCAAGCATTTTTGGTACCAATAAAAGCAGGAAACGCTAATGTAGAGGCATTCTTTGTTTAGCCCAACTGCAAAAGCAGATTACTTGCAGAAAGCTGTAATGTAATATATAAAAGAATCTTAAAATTCTGTGAGTTATTTTGTGAAAAATTGAGCTGATTGTTTATTTTTGAAGCCATTAATTCCATAAGTAGGGATTATGGCGAGAAATCCTGGCAAGGTTTTTTTTTTTTTTAAACCTAGATATATTCTTGGAGGCAACATGCCACAATTCCTGTAATATCAACATGTATTTTAATTTCTTTCTTTAGCTTTGCTGCAATGAAGTCAAACTGGCTAGCTGCATGGAGTTTAGTTTCTATTGACTTAAGATATACCAGTTGATGTGTTTTGAAAAAGGCA

Fln Alignment:

Contig4112___IQLNREATFLLVFEHFKKENEQIMSGLRSHPKSLFLYLKTIIGVHSNGILQYPTAPLEGNSEISLF-GMRGLDQSRELQNYLDRISTLPELLRRDGIEVTDEMAELYLELLCQFEPKSVLKFLESFENYRLEHCLRLCQEYGVTDAAAFLLERVGDVGSALSLIIADIDVRIQEMDSAVANAFVKSTSAITSEEKQLNVVLTMPEVETVQAILCAAVGLCQRNTLRLDPQESESLWFSLLDTFSDPSRNLYNYEKSLRKENGHCNKSKTG----QNVKASLRWKVLEVGDAAYLLRKVFAHFVGEIIEGMVGYVPLPMIMGKLLSDNGNxEFGDFKATILGMLGTYGYERTILDTAKNLIEDDTYYNIGMLKKGASHAYAPASSYCCKCGRALDKESFGSSICIFHCGHATHLQCETQDSKTPSKDSSAGCPICI
B9RNK2______________VVLSREGTFLLIRDHFQNDSPRILSRLQSHPKSLFLYLKTVIEVHLSGTLNF--SRLKKDDSVDAFSGRRVEDQLKGLEAYLERISDFPKFIRNNPVNVTDDMIELYMELLCQYERNSVLKFLETFESYRVENCLRLCQEYEITDAAAFLLERVGDVGSALLLTLTQLNDKFVNLDIAVESLISTSLSSSIGTDQYGN-VLRIKEVDDIYSILNVCIGLCQRNTPRLQPEESETLWFKLLDSFCAPLMDSFT-DKRVSKRDDHAGMLTEALGEHEDDEAIIKWKISKSHKGAHILRKLLSQFIKEIVEGMIGYVHLPTIMSKLLSDNGNxEFGDFKITILGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLVCCICNCPLTKDSPSFRIRVFSCGHATHLQCELLESETSSKGSLSGCPICM

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
465		20		80	0.995493
468		20		80	0.995493
472	80	20			0.995493
473		20	80		0.995493
475			80	20	0.995493
476		80	20		0.995493
477			20	80	0.995493
478		20		80	0.995493
669	28		71		1.0
777	80	20			0.995493
779	80			20	0.995493
1235			80	20	0.995493
1388	16			83	0.994512
1390		83	16		0.994512
1391	83		16		0.994512
1392	83		16		0.994512
1417			85	14	0.993533
1419	85			14	0.993533
1420	85		14		0.993533
1421	85		14		0.993533
1422			14	85	0.993533
1444			85	14	0.993533
1465		11		88	0.923564
1523	10	90			0.90298
1641	14			85	0.993533
1735	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain