SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4096

Length: 2051 nt

UniGene Fasta

>sp_v3.0_unigene4096
GAAGACTCCAATTCACGTCACTCGTCAATGCGGAGGCGGAAATTATTGGGTACCCAGCGATTCCACGCGGAGCAATTCGATTCCGCGGTGGGTCTTTAAAGCCGAGACATGAACAGCGGGGCATGGGCACACACAGGAACCTTCTCAGCTTTACCATGTGAAGAGAGCGAGAGAGAGAGCCAGGTTCGAATCCCAGCGCTCACACCAGCACGTGTTTCTTCGACTCGTGGTCTGTGGGCGATTAGGTGAAGTCGGAGAGACTATTAAATTGAGAGGGCGCTTCGATCGGTTTTCATTCGGACGGTTTTAAGGTTGGGAATTCAACGATTTTGGTACTGACATCGATTCGCATGGCGAAATTGCTCAAGGTGCTGTTCTTTCTGGTTTTTCTCTGCAATGTCGGGTACCCTTCATGGGCTCAGACATGCACAAAGTCCTTCGCGAGCAACAGGCTGTTCAGCAGCTGCAAGTCGCTGCAGCAGCTGAACGCTAACTTCGCCTGGACTTATGAACCCGGAAATGGGTCCATTCGCATGGCCTTCACGGCCAAGCCTGATACCTCGGGAGGCTGGGTCGCGTGGGGAATCAACCCGGATGCGCCTCAAATGGGCGGGACACAATCCCTGATTGCATTTAGGCACTCCAATGGCACCCTGCTCGTCCTGACGTACAATATCACGGATGCAACCAAAGGTAGCCCTCCGGAGCCCTCGCCTATCGATTTCGCAGTGCAGGACATGGCCGTCGAGTTCCTAAATAACCAGATCACCATATTTGCTACCTGGGTGCTAAAGAACAATCAGACGAGTGTGAATCATGTGTGGAATACCGGAGGGCAAGTCAAAGGCGTGGTTCCTCAGTCTCATGCCTTCAGTTCTGCAAATTTAGCGAGCAAGGGGACCATAGATTTGAAGTCTGGAGTGGCTATCATATCTACAAGCACTCCACATCAAGTTCTGAAAAATAGGCATGGGGTGTTGAATGCTGTTGGTTGGGGCATATTGCTTCCAATTGGGATAATGTTTGCCAGGTATCTGCGGCAATTTGAATCTGCAGATCCTGCCTGGTTCTACCTGCATGCGTTTTGTCAAACAGCGGGCTATGCTCTCGGAGTGGCTGGTTGGGCCACTGGCCTTAAGCTTGGGAGCTACTCTAAAGGGGTTGTGTATAGCCAACATCGAAGCCTCGGAATTGCAATTTTTGTATTCGGAACATTGCAGGTCTTTGCATTGCTCCTGAGGCCAAAGAAAGAGCACAAGTTTCGAAGGTACTGGAATGTATATCATCACAGTCTTGGTTATACAGTTGTTGTTTTAAGTATACTGAACATGTTCAAAGGATTTGATATTCTGAGACCTGATAACAAGTGGAAGCGGGCTTATATCATAGTGATTTCTACACTGGGTGGAATTGCTGTGGTCTTGGAAATAACATCCTGGATCATCTACTTTCGCCGGCGTGACTCAAAAGGTGCAAGGACCTCAAACAGCGCAGCTTCTAATGGGGGAAGGAAGAGGCCTGGGGTTTAGAACAAATTTGGAATGATCAGGTATCCATACTGCTACACAGGATTAGCAACTGTAGAAGTTTGGGACAAATACATGGAAGCCTGGGATGGTTATTTGCTCCATGTCTCAGTTCAGGGCTGGTACTACTACCAGTCCTGTTATAGATAAAATATTAGTGGATAGCAGTTGTGGTATATTCTTTCTGTAAATATCACTAATGGATTTTTGTTGAATTATTTCATGATTACGAGATATGTAGGTGTGAAATTTGTATTTTCTATATATAGTGGAAACCATTTCCTTTTAGTAGTGCTTATTTCTTGGATAGTTTGGCTAGAGTTGAGCATGTTCAGTGGCAGAGCGAACATGACGCTTTTGTTACAGGGGTTGGTTTAGAAAGGACTTTATTGACATGGGTTTTGGTTGGTTTTCATCAATGTCTCTCACATGTAATCTCTGTATTCTTTGGACTTTTCAATACATAATTTGCTTTTCCAAAACTTGTAACCAAAAAAGTTAAGTTTAACCAAAGGTAAGAACCAA

Ace file of the UniGene sp_v3.0_unigene4096

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin induced-like protein n=8 Tax=Picea sitchensis RepID=A9NV90_PICSI	-	-	0.0	60%
FL-Next	tr=Auxin induced-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Putative membrane protein	-	-	2.214e-11	-

Source	Gene names
Sma3	26.t00022; 31.t00023; AT4g12980; At2g04850; At3g25290; At4g12980; At5g35735; At5g47530; GSVIVT00004894001; GSVIVT00010822001; GSVIVT00010824001; GSVIVT00012469001; GSVIVT00020124001; GSVIVT00029153001; GSVIVT00033521001; LOC_Os03g09850; LOC_Os03g09900; Mt

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	DOMON domain	IPR005018	-	-
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	-
Sma3		IPR007613	-	-
Sma3	Uncharacterised conserved protein UCP037471	IPR017214	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35735.1	Auxin-responsive family protein chr5:13900913-13902934 REVERSE LENGTH=404	45%
RefSeq	Arabidopsis thaliana	NP_568531.1	putative auxin-responsive protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002301814.1	predicted protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E0Z5V0

Fln msg:

Fln protein: MAKLLKVLFFLVFLCNVGYPSWAQTCTKSFASNRLFSSCKSLQQLNANFAWTYEPGNGSIRMAFTAKPDTSGGWVAWGINPDAPQMGGTQSLIAFRHSNGTLLVLTYNITDATKGSPPEPSPIDFAVQDMAVEFLNNQITIFATWVLKNNQTSVNHVWNTGGQVKGVVPQSHAFSSANLASKGTIDLKSGVAIISTSTPHQVLKNRHGVLNAVGWGILLPIGIMFARYLRQFESADPAWFYLHAFCQTAGYALGVAGWATGLKLGSYSKGVVYSQHRSLGIAIFVFGTLQVFALLLRPKKEHKFRRYWNVYHHSLGYTVVVLSILNMFKGFDILRPDNKWKRAYIIVISTLGGIAVVLEITSWIIYFRRRDSKGARTSNSAASNGGRKRPGV*

Protein Length: 394

Fln nts: GAAGACTCCAATTCACGTCACTCGTCAATGCGGAGGCGGAAATTATTGGGTACCCAGCGATTCCACGCGGAGCAATTCGATTCCGCGGTGGGTCTTTAAAGCCGAGACATGAACAGCGGGGCATGGGCACACACAGGAACCTTCTCAGCTTTACCATGTGAAGAGAGCGAGAGAGAGAGCCAGGTTCGAATCCCAGCGCTCACACCAGCACGTGTTTCTTCGACTCGTGGTCTGTGGGCGATTAGGTGAAGTCGGAGAGACTATTAAATTGAGAGGGCGCTTCGATCGGTTTTCATTCGGACGGTTTTAAGGTTGGGAATTCAACGATTTTGGTACTGACATCGATTCGC_-_ATGGCGAAATTGCTCAAGGTGCTGTTCTTTCTGGTTTTTCTCTGCAATGTCGGGTACCCTTCATGGGCTCAGACATGCACAAAGTCCTTCGCGAGCAACAGGCTGTTCAGCAGCTGCAAGTCGCTGCAGCAGCTGAACGCTAACTTCGCCTGGACTTATGAACCCGGAAATGGGTCCATTCGCATGGCCTTCACGGCCAAGCCTGATACCTCGGGAGGCTGGGTCGCGTGGGGAATCAACCCGGATGCGCCTCAAATGGGCGGGACACAATCCCTGATTGCATTTAGGCACTCCAATGGCACCCTGCTCGTCCTGACGTACAATATCACGGATGCAACCAAAGGTAGCCCTCCGGAGCCCTCGCCTATCGATTTCGCAGTGCAGGACATGGCCGTCGAGTTCCTAAATAACCAGATCACCATATTTGCTACCTGGGTGCTAAAGAACAATCAGACGAGTGTGAATCATGTGTGGAATACCGGAGGGCAAGTCAAAGGCGTGGTTCCTCAGTCTCATGCCTTCAGTTCTGCAAATTTAGCGAGCAAGGGGACCATAGATTTGAAGTCTGGAGTGGCTATCATATCTACAAGCACTCCACATCAAGTTCTGAAAAATAGGCATGGGGTGTTGAATGCTGTTGGTTGGGGCATATTGCTTCCAATTGGGATAATGTTTGCCAGGTATCTGCGGCAATTTGAATCTGCAGATCCTGCCTGGTTCTACCTGCATGCGTTTTGTCAAACAGCGGGCTATGCTCTCGGAGTGGCTGGTTGGGCCACTGGCCTTAAGCTTGGGAGCTACTCTAAAGGGGTTGTGTATAGCCAACATCGAAGCCTCGGAATTGCAATTTTTGTATTCGGAACATTGCAGGTCTTTGCATTGCTCCTGAGGCCAAAGAAAGAGCACAAGTTTCGAAGGTACTGGAATGTATATCATCACAGTCTTGGTTATACAGTTGTTGTTTTAAGTATACTGAACATGTTCAAAGGATTTGATATTCTGAGACCTGATAACAAGTGGAAGCGGGCTTATATCATAGTGATTTCTACACTGGGTGGAATTGCTGTGGTCTTGGAAATAACATCCTGGATCATCTACTTTCGCCGGCGTGACTCAAAAGGTGCAAGGACCTCAAACAGCGCAGCTTCTAATGGGGGAAGGAAGAGGCCTGGGGTTTAG___AACAAATTTGGAATGATCAGGTATCCATACTGCTACACAGGATTAGCAACTGTAGAAGTTTGGGACAAATACATGGAAGCCTGGGATGGTTATTTGCTCCATGTCTCAGTTCAGGGCTGGTACTACTACCAGTCCTGTTATAGATAAAATATTAGTGGATAGCAGTTGTGGTATATTCTTTCTGTAAATATCACTAATGGATTTTTGTTGAATTATTTCATGATTACGAGATATGTAGGTGTGAAATTTGTATTTTCTATATATAGTGGAAACCATTTCCTTTTAGTAGTGCTTATTTCTTGGATAGTTTGGCTAGAGTTGAGCATGTTCAGTGGCAGAGCGAACATGACGCTTTTGTTACAGGGGTTGGTTTAGAAAGGACTTTATTGACATGGGTTTTGGTTGGTTTTCATCAATGTCTCTCACATGTAATCTCTGTATTCTTTGGACTTTTCAATACATAATTTGCTTTTCCAAAACTTGTAACCAAAAAAGTTAAGTTTAACCAAAGGTAAGAACCAA

Fln Alignment:

Contig4096___AQTCTKSFASN---RLFSSCKSLQQLNANFAWTYEPGNGSIRMAFTAKPDTSGGWVAWGINPDAPQMGGTQSLIAFRHSNGTLLVLTYNITDATKGSPPEPSPIDFAVQDMAVEFLNN-QITIFATWVLKNNQTSVNHVWNTGGQVKGVVPQSHAFSSANLASKGTIDLKSGVAIISTSTPHQVLKNRHGVLNAVGWGILLPIGIMFARYLRQFESADPAWFYLHAFCQTAGYALGVAGWATGLKLGSYSKGVVYSQHRSLGIAIFVFGTLQVFALLLRPKKEHKFRRYWNVYHHSLGYTVVVLSILNMFKGFDILRPDNKWKRAYIIVISTLGGIAVVLEITSWIIYFRRRDSKGARTSNSAASNGG
E0Z5V0______________AQTCLKSFTDGNAIKSYASCNDLSTLNAALSWTYFPTNGSIDIAFRATPAASAGWVGWGINPTATAMVGTQALIAFKHSNGSMVVDTYNIVAQ---APPSPSTINITVSNKSAVFENTGQITIFATLTLPSNKTAVNHVWQVGSAVNGLVPQAHANNQANLASATTIDLKTGVSSGSAAVSQKTLKDRHGIINVVGWGILMPIGAMIARYLKMFKSADPAWFYLHAFCQSSGYIIGVAGWATGLKLGSDSPGVERTPHRRIGIALFCLGTLQVFALLLRPKKDHKYRKYWNVYHYATGYTVIILTIVNIFKGFDILQPADKWKHAYIAVIASLGGIAAVLEVTTWIIFFKRKSKTSPRTVNSAYGNGG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
125			33	16	1.0
128		16	83		0.994512
140		50		33	1.0
141		16		16	0.988813
387		20		80	0.995493
484		80		20	0.995493
513	40		60		1.0
590	85		14		0.993533
900	21		78		1.0
1754			85	14	0.993533
1779		83		16	0.994512
1786		83		16	0.994512
1815	50		50		1.0
1848	16		83		0.994512
1885		66		33	1.0
1902		20		80	0.995493
1999	5		73	21	1.0
2008	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain