SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4071

Length: 2305 nt

UniGene Fasta

>sp_v3.0_unigene4071
TCGAGAAGGACAACGTGCAGAAATTGGTATAAAAGGAGGTGCAGGGAGGAGTAGTTTGTTGCAGAGTCTCTTGGGTATTTGAGAATCGTAGAGTACCGAAGTGGGTCGTGCTTTGTTTGAATTTTTGGAGGAGAGAGTGGAGATTCTGATAGATTTTGCTAAAGCTCTGCTGCTCTAGTTTGCTGAGGTTGAAGAGCAAAGGAGGTCTGGATATTGCCTGAATTGTAGCACAGAAGAGGTTGACAGAAAGTTGCTTTTGACAATCTTCAATATCCTCAAGAGTGTAGTTCAGAGAAAAGATGGAAGGTGGACCTGCAAAGGCCGATGCCCTAGAATTTACAACATGTATTAACGTGATCAGACAAAACCCATTTGTACTCAAGTTGGCATTATCTGCAGGCCTTGGAGGCTTTCTTTTTGGCTATGATACAGGAGTTATATCTGGTGCGCTCTTGTACATTAGAGATGATTTTCCAGCAGTGGACCGTTCTACAACTCTACAGGAAACTATTGTGAGCACTGCCATTGCTGGGGCCATCATTGGCGCTGGATTCGGGGGGTGGATGAGTGACCATTTTGGGAGGAGGAAAACGCTGCTGCAAGCTGATCTTGTATTTATTCTGGGGGCAATTCTCATGGCTGCTGCACCAATCCCTGCAGTTTTGATAATGGGTAGAATCTGTGTGGGGTTGGGTATAGGCATGGCATCAATGACTTCACCCCTTTATATTTCAGAGGCCTCGCCCACGAAAGTGAGGGGCGCTATAGTGAGTACTAATGGTTTTCTCATCACAGGAGGACAATTCCTGTCATATTGCATCAACCTGGCATTCACCAAGGCACCTGGTACTTGGAGATGGATGCTTGGAATTGCAGCTGTTCCTGCACTTCTACAGCTTTTCTTAATGTTCTATTTACCTGAATCTCCTCGTTGGTTGTACAGAAAGAAAAGGGAAGCAGAGGCAATCGCCATCATGAAGAGGATACATCCCCCTGAGGATCTTGAAAATGAAATTCAAGAGCTCAAGCAATCTGTTGAGCAAGAAATTGAGTTGCACGGGCCTTCACAAAAGATTCAGTTCAGTCAATTATGGAAGGTCAAAGAAGTGAGATATGCACTTATTGCAGGTTGTGGAATTCAAATATTTCAACAATTTGTTGGCATCAACACTGTCATGTACTACAGTCCTACCATTGTACAATTGGCTGGATTTGCGTCCAACACAGTTGCTCTGTTGCTGTCTCTAATAACTTCAGGCTTAAATGCTCTTGGCTCTATTTTGGCGATCTATCTCATTGACAGATTTGGAAGGCGAAAACTTCTTATTTCCAGTTTGCTTGGAGTAATTACATCACTAGTCCTATTAACTATTGTATTCCACATAACTACAAATAGTTCTCCTTTAGTAAGCAGGAAAGCAACCCAACAATTTTCAGGTTACCAATGTCCACAATATATTTCAACAAGTGCAACATGGGACTGTATGCAATGCCTAAAGGCCAGCCCTGATTGTGGATTCTGTGCATCTGGAGGTAACCAGTTGTTGCCAGGAGCCTGTTTACTGTCAAATTCAACAGTGAAGCATGTTTGTGAAGGTGATTCTCGACCATGGTTTACCCGAGGATGCCCAAGCCAGTATGGTTGGCTGGCTGTTCTTGGACTGGCACTGTACATTATTTTCTTTGCTCCTGGCATGGGAACACTTCCTTGGGTCATCAACTCTGAGATTTATCCTTTGAGGTACCGAGGTATCTGTGGAGGCCTGGCTGCAACAGCAAATTGGGTTTCTAATTTGATAGTGGCGCAAACATTTCTCACTATGACTGTAACCATTGGCACTTCCATGACATTCTTAGTTTTTGGGGTAATATCAGTGATTGCACTTTTCTTTGTACTCATTGTTATGCCTGAAACAAAGGGCCTTTCACTTGAGCAGATTGAAGGGACGTTGCAACAGAGAGTAGAGAATTTCAGCTTAAAGTTTTGGAAGACAAATAACCCCACAGTTTCTTCAAATAAAGAAAACCTCAAAAACAATGATCTTGCAAGCTAGCTCTTGTAAGTTTCTACTTGTGAAGTAACTGGATGTATAGGGATATAGTATCCTAAGATCCTGTTGGAGAAATTCCAGTGGGTGTATATTATGCCAAAGGTATTGAATCCGAGAAGTAATGCTGTTGTAGATTTCTCCACACAAGACATTTGAGTTCTCGACATGTATAGATGAACAGTATGGTCTCGGAGTGGACAGTTTAACTCTCTACATGTATAAAAAATAAGTATCCCTATGGTTCCAGATTATGC

Ace file of the UniGene sp_v3.0_unigene4071

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative inositol transporter (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKB0_VITVI	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Putative Na+/myo-inositol symporter	-	-	1.48e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.155e-09	-

Source	Gene names
Sma3	At1g30220; At2g35740; At2g43330; At4g16480; B1364A02.4; Ctr; F12P21.2; FCAALL.375; GSVIVT00001923001; GSVIVT00012471001; GSVIVT00028332001; INT1; INT2; INT3; INT4; Itr1; Itr2; Itr3; MtrDRAFT_AC151520g15v2; MtrDRAFT_AC152184g3v2; OJ1048_C10.5; OSIGBa0130B0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	myo-inositol transport	GO:0015798	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30220.1	ATINT2, INT2 inositol transporter 2 chr1:10632957-10635439 REVERSE LENGTH=580	64%
RefSeq	Arabidopsis thaliana	NP_174313.1	putative inositol transporter 2 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002308797.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg:

Fln protein: MEGGPAKADALEFTTCINVIRQNPFVLKLALSAGLGGFLFGYDTGVISGALLYIRDDFPAVDRSTTLQETIVSTAIAGAIIGAGFGGWMSDHFGRRKTLLQADLVFILGAILMAAAPIPAVLIMGRICVGLGIGMASMTSPLYISEASPTKVRGAIVSTNGFLITGGQFLSYCINLAFTKAPGTWRWMLGIAAVPALLQLFLMFYLPESPRWLYRKKREAEAIAIMKRIHPPEDLENEIQELKQSVEQEIELHGPSQKIQFSQLWKVKEVRYALIAGCGIQIFQQFVGINTVMYYSPTIVQLAGFASNTVALLLSLITSGLNALGSILAIYLIDRFGRRKLLISSLLGVITSLVLLTIVFHITTNSSPLVSRKATQQFSGYQCPQYISTSATWDCMQCLKASPDCGFCASGGNQLLPGACLLSNSTVKHVCEGDSRPWFTRGCPSQYGWLAVLGLALYIIFFAPGMGTLPWVINSEIYPLRYRGICGGLAATANWVSNLIVAQTFLTMTVTIGTSMTFLVFGVISVIALFFVLIVMPETKGLSLEQIEGTLQQRVENFSLKFWKTNNPTVSSNKENLKNNDLAS*

Protein Length: 586

Fln nts: TCGAGAAGGACAACGTGCAGAAATTGGTATAAAAGGAGGTGCAGGGAGGAGTAGTTTGTTGCAGAGTCTCTTGGGTATTTGAGAATCGTAGAGTACCGAAGTGGGTCGTGCTTTGTTTGAATTTTTGGAGGAGAGAGTGGAGATTCTGATAGATTTTGCTAAAGCTCTGCTGCTCTAGTTTGCTGAGGTTGAAGAGCAAAGGAGGTCTGGATATTGCCTGAATTGTAGCACAGAAGAGGTTGACAGAAAGTTGCTTTTGACAATCTTCAATATCCTCAAGAGTGTAGTTCAGAGAAAAG_-_ATGGAAGGTGGACCTGCAAAGGCCGATGCCCTAGAATTTACAACATGTATTAACGTGATCAGACAAAACCCATTTGTACTCAAGTTGGCATTATCTGCAGGCCTTGGAGGCTTTCTTTTTGGCTATGATACAGGAGTTATATCTGGTGCGCTCTTGTACATTAGAGATGATTTTCCAGCAGTGGACCGTTCTACAACTCTACAGGAAACTATTGTGAGCACTGCCATTGCTGGGGCCATCATTGGCGCTGGATTCGGGGGGTGGATGAGTGACCATTTTGGGAGGAGGAAAACGCTGCTGCAAGCTGATCTTGTATTTATTCTGGGGGCAATTCTCATGGCTGCTGCACCAATCCCTGCAGTTTTGATAATGGGTAGAATCTGTGTGGGGTTGGGTATAGGCATGGCATCAATGACTTCACCCCTTTATATTTCAGAGGCCTCGCCCACGAAAGTGAGGGGCGCTATAGTGAGTACTAATGGTTTTCTCATCACAGGAGGACAATTCCTGTCATATTGCATCAACCTGGCATTCACCAAGGCACCTGGTACTTGGAGATGGATGCTTGGAATTGCAGCTGTTCCTGCACTTCTACAGCTTTTCTTAATGTTCTATTTACCTGAATCTCCTCGTTGGTTGTACAGAAAGAAAAGGGAAGCAGAGGCAATCGCCATCATGAAGAGGATACATCCCCCTGAGGATCTTGAAAATGAAATTCAAGAGCTCAAGCAATCTGTTGAGCAAGAAATTGAGTTGCACGGGCCTTCACAAAAGATTCAGTTCAGTCAATTATGGAAGGTCAAAGAAGTGAGATATGCACTTATTGCAGGTTGTGGAATTCAAATATTTCAACAATTTGTTGGCATCAACACTGTCATGTACTACAGTCCTACCATTGTACAATTGGCTGGATTTGCGTCCAACACAGTTGCTCTGTTGCTGTCTCTAATAACTTCAGGCTTAAATGCTCTTGGCTCTATTTTGGCGATCTATCTCATTGACAGATTTGGAAGGCGAAAACTTCTTATTTCCAGTTTGCTTGGAGTAATTACATCACTAGTCCTATTAACTATTGTATTCCACATAACTACAAATAGTTCTCCTTTAGTAAGCAGGAAAGCAACCCAACAATTTTCAGGTTACCAATGTCCACAATATATTTCAACAAGTGCAACATGGGACTGTATGCAATGCCTAAAGGCCAGCCCTGATTGTGGATTCTGTGCATCTGGAGGTAACCAGTTGTTGCCAGGAGCCTGTTTACTGTCAAATTCAACAGTGAAGCATGTTTGTGAAGGTGATTCTCGACCATGGTTTACCCGAGGATGCCCAAGCCAGTATGGTTGGCTGGCTGTTCTTGGACTGGCACTGTACATTATTTTCTTTGCTCCTGGCATGGGAACACTTCCTTGGGTCATCAACTCTGAGATTTATCCTTTGAGGTACCGAGGTATCTGTGGAGGCCTGGCTGCAACAGCAAATTGGGTTTCTAATTTGATAGTGGCGCAAACATTTCTCACTATGACTGTAACCATTGGCACTTCCATGACATTCTTAGTTTTTGGGGTAATATCAGTGATTGCACTTTTCTTTGTACTCATTGTTATGCCTGAAACAAAGGGCCTTTCACTTGAGCAGATTGAAGGGACGTTGCAACAGAGAGTAGAGAATTTCAGCTTAAAGTTTTGGAAGACAAATAACCCCACAGTTTCTTCAAATAAAGAAAACCTCAAAAACAATGATCTTGCAAGCTAG___CTCTTGTAAGTTTCTACTTGTGAAGTAACTGGATGTATAGGGATATAGTATCCTAAGATCCTGTTGGAGAAATTCCAGTGGGTGTATATTATGCCAAAGGTATTGAATCCGAGAAGTAATGCTGTTGTAGATTTCTCCACACAAGACATTTGAGTTCTCGACATGTATAGATGAACAGTATGGTCTCGGAGTGGACAGTTTAACTCTCTACATGTATAAAAAATAAGTATCCCTATGGTTCCAGATTATGC

Fln Alignment:

Contig4071___MEGGPAKADALEFTTCINVIRQNPFVLKXXXXXXXXXXXXXYDTGVISGALLYIRDDFPAVDRSTTLQETIVSTXXXXXXXXXXXXXWMSDHFGRRKTLLQADLVFILGAILMAAAPIPAVLIMGRICVGLGIGMASMTSPLYISEASPTKVRGAIVSTNGFLITGGQFLSYCINLAFTKAPGTWRWMLGIAAVPALLQLFLMFYLPESPRWLYRKKREAEAIAIMKRIHPPEDLENEIQELKQSVEQEIELHGPSQKIQFSQLWKVKEVRYALIAGCGIQIFQQFVGINTVMYYSPTIVQLAGFASNTVALLLSLITSGLNALGSILAIYLIDRFGRRKLLISSLLGVITSLVLLTIVFHITTNSSPLVSRKATQQFSGYQCPQYISTSATWDCMQCLKASPDCGFCASGGNQLLPGACLLSNSTVKHVC-EGDSRPWFTRGCPSQYGWLAVLGLALYIIFFAPGMGTLPWVINSEIYPLRYRGICGGLAATANWVSNLIVAQTFLTMTVTIGTSMTFLVFGVISVIALFFVLIVMPETKGLSLEQIEGTLQQRVENFSLKFWKTNN
B8LLI2______________MEGGPTKADAEEFTNCLSLIRQNPFVLRLALSAGLGGLLFGYDTGVISGALLYIRDDFEEVDHSTKLQETIVSMAVAGAIVGAAFGGWVNDRFGRRFALLLADSLFFLGAIIMAAAPNASVLISGRVFVGLGVGMASMTAPLYISESSPAKVRGALVSTNGFLITGGQFLSYLINLAFTKAPGTWRWMLGVAGMPALLQFILMLTLPESPRWLYRKKGEAEAVAVLKRIYSPDEVEEEIQSLKESVETEVQELGTTDKVRYWQLWTTKEIRYALFVGVGLQVFQQFVGINTVMYYSPTIVQLAGYASNQTALLLSLITSGLNATGSIASIYLIDKAGRKKLVIFSLCGCIVALGMLAGVFYQTTHHSPLVSMAATQHYSNYTCPDYATAPGIWDCTRCLKANPDCGFCAAAGNQLLPGACLIANSTTKDLCNKFDHRPWFTRGCPSRLGFLAIVGLALYIIFFSPGMGTVPWVVNSEIYPLKFRGLCGGIAATACWISNLIVAQTFLTLTVAIGTSDTFLLFGCIAVAGLFFTLVFMPETKGLSFEQVEVMLQERVRLFSFKFWKKDH

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
458		33		66	0.997452
479	33			66	1.0
626	40		60		1.0
915	16			83	0.994512
916			16	83	0.994512
917	83			16	0.994512
919		83	16		0.994512
921		16	83		0.994512
922	83		16		0.994512
923	83			16	0.994512
1033		80		20	0.995493
1196			14	85	0.993533
1198			14	85	0.993533
1224	87		12		0.992554
1264	87	12			0.992554
1269		87	12		0.992554
1313	50		50		1.0
1426	66			33	1.0
1577	85		14		0.993533
1681		7		71	1.0
1703	87		12		0.999964
1705			12	87	0.999964
1864	22		77		0.999999
1902	75		25		1.0
2140	72		27		1.0
2209		57		42	1.0
2279	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain