SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4067

Length: 3499 nt

UniGene Fasta

>sp_v3.0_unigene4067
GACTACAATTTCTAGAACTTTTGGATGAAAGGTGCGGTAAAGACGCCTCAGAACAATATCAAGGGTTTCATGTTCCTTACGCTGGGTTGATTTCTTGCCAGGGTTTCGATTCCTTTACTGTTTGGTTTCAAAGAGCGATAGCTCTTGGCGATTTGGATGTTTCCACGTCGGTCGGTGGTGGTGCATTCGGATAAATAAATTGATTTTGTAGAAAGTCGGTTTGAGAACGGTGTCTTGCTCAGGTTTCTTTGCCGTCAGCTGACTTCATATAACAAGGCCTGAAAATATTTCAGTTGAAGCGGGGAAGCATAATATTCTTTCGAAAAGTGGTGGATCTAAATAAATGAAGTCCTCTTGTTGAAAATCTGTTGGACGTCATGCCTTGCTCTGTTTTCTGCTGTTCGAGGGCTTTAAAGCATTAAATCTGAAAAATCTTTGCTTTGAAGCGGCAAATCTGGGAAAAAACCTGCTTTGAAGCGGTAAACCTGGAAATATGCTTTGAAGCGGCATATCTGAAAAAGTTATCTTTCTTGGGACAAAACAGTTAATTCTTTTCTCTCCCTGCATGAAAGTTCTTTGGAGGGTTGTACATTTAACCGAAGCTTAAGCCTTGGGTTGATTGTGAATGAACAACCTCGGTGGTTCGCGGAGCGCTTTTAGATTGTTGTAAGATTCTTTCAATTGCTGGTGACTTAAAACATTTGCGTCGCTATTGGTCAGCTTTTGGAAATTATTGCGATTCAATCTTCGTGTAGATCGCTTTACCGGTTATTTTCTGGACAGCTGGACGAAGGCACAGATGCTGTAGACAGATTCGCTGTGTTTTTGATTATTCGTTTGAGCTGTAAATTTTTGTTTATCTTGTCTTTATTTCTGGGAAATCGCCAAATGCTATATTAAATATTGTACAAAGCGTGCGAAAGGAGCAACTCTGGGAGATGTTGTGGTAATATCTCTGAGAAGAGAATATTTGAGACAAAGCTTGTAGGGTACTGTCTATGGGAGCAGTTTTACCGTGTTCTATTTTGCCAATAGGCGGCCAGGATTTGGAGACTTTCGTGCATCAACTACCAGATCTGTGCATATTTTAGGGAAATTTTAGTAGTTTAATCAGAATCTGATATCCAAAACTTTTAATTTTAAGATTTCAAGGTCGAAGGATTCACAGATCAGTTTTTAGTCTAGGTCAACCGTGAAGCGATCTTTAATATGCATCCCCGTGCTAATAACGGGTCAAACATGGCGAATGGCCGTGTAGGAAGCTCGTTTCAGCCATTTCAAAGAAATCCTCAACAACAGCAGCACCAATCATATCCTCAAAGAAATTTCCAGCAACAGCAATATCCACAACAGAGGCAGACCTACCAGCAATCACAACCACAACCGCAATATATGGTACAAAACAGGAATCATCAAATTCACTCTGAACCTGTTGTGCATGTTGCTCCAGAAGAAAATCATAACGAACCGGAGGAAAAGATACTGACAGAAGATGTTGGTTCGAGCACGCAAGATTGGAAGGCCCAGTTGAAAATACCACAAGCTGATGCTAGGTACAGGACTGAGGATGTTACAGCTACAAAAGGAAATGAATTTGAAGATTATTTTCTCAAAAAAGAGCTGCTCATGGGAATCTATGAGAAAGGGTTTGAAAGGCCCTCTCCAATTCAAGAAGAAAGTATTCCTATTGCTTTAACAGGGAGTGATATTCTTGCTCGGGCAAAGAATGGAACGGGAAAGACAGCTGCCTTTTGCATTCCAGCAATAGAGAAGATTGATCAAAATAAAAATACCATACAAGTTCTTGTGTTAGTTCCAACAAGAGAGCTTGCACTTCAGACATCACAAGTGTGCAAGGAGCTGGCCAAGCACTTGAATATTCAAGTAATGGTTAGTACGGGGGGAACTAGCTTAAAGGATGACATCATGCGCTTGTATCAGCCAGTACATCTACTTGTAGGCACACCAGGCAGAATTCTGGATCTGGCAAATAAGGGTGTTTGCAACCTGAAAGATTGTACAATGCTTGTAATGGATGAGGCTGATAAACTCCTCTCTCCAGAGTTTCAACCTTTGGTGGAACAGCTAATCAGATTTCTCCCTAAAACCCGCCAAATATTATTGTTCTCTGCTACATTTCCAGTCACTGTCAAATCATTTAAGGATAGGTTTTTGCGCAAGCCATATGTGATAAACCTTATGGATGAACTAACTCTCAAAGGTATCACACAGTTTTATGCATTTGTGGAGGAGAGGCAAAAGGTTCATTGTCTGAACACACTTTTTTCCAAGCTCCAAATCAACCAATCAATAATTTTCTGCAATTCTGTTAATCGAGTAGAACTCTTGGCCAAAAAAATTACGGAGCTTGGATATTCATGCTTTTACATCCATGCGAAGATGTTACAATCTCACCGGAACAGAGTATTCCATGACTTCCGTAATGGTGCCTGTAGAAATCTGGTGTCTTCAGATCTGTTTACGAGAGGAATAGATATTCAAGCGGTTAATGTTGTTATCAATTTTGACTTTCCTAAGAATTCAGAAACTTATTTGCATAGAGTAGGGCGATCTGGAAGGTTTGGTCATCTAGGACTCGCTGTAAATTTGATTACATATGAGGATCGGTTTAATTTGTACAAGATTGAGCAGGAACTTGGCACTGAAATAAAGCCAATCCCACCTCAAATAGATCAAGCCATTTACTGCAGATAGAGGGATGAGGGCATACGAGTATTTGGCATTGTGTTATATAGTTGCAAATTAATGAGGGTTCGGCTGGCATTACATTTCTTTGAAATTTCAACTTAGAAGGGGCACAGACAAATTCCGAAACATGCAACATATATTTCCCTATGCCGATGCATGGGAGGACCATTCAGTGCTGTAGATGGGCAGCATTTATTTACAGCCATGGATCATGTATGCACTCTTGCAAGACGCCTCACATGCAATCCCTTTTATGTACAGAATGCTGTTGAGGTCTGGATATTTGGAAAATTGTGTATTGCAAGTCAATGTGCTGTGAAATAAGCGCACATTCGGGATTAATCCAGAATGTAGGCTGCTTTGATGTATAATTTGATTCCATATGAACAATGGACTTATGTGCTAGGGCATTTGGACTGAGAATATTCTGCTTCTGTTTTAAGTTGCCAAGGTAGACTCAAATTATCCCCAGTGACAGTTTTTGTTTAGAAGATATTTTATTATTATTATGTTTAGTGACTCAAATTGCTAATTTCTGATGCTTATCAAATTATTGTCGAGCTAAGAAACGTTTGAGTTTGGATATTTTGCGTATATCTAATAATATAGTTATTGACGAATAAGAATATTTTCGGTTGGACTTTGTTGTGTACTAGTTATTTGGGATGGAAATCCACACGCCTAGGTGATCTCCTAAGATGAACCACTGATGTCTAGCGACCGGAAAGGACTCGACTGTTATTTTTATTTGGTTAATTCCAAAAAAAAAAAGAGTGTTTGAGTATATGAT

Ace file of the UniGene sp_v3.0_unigene4067

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=DEAD-box ATP-dependent RNA helicase 8 dbj\|BAD25226.1\| putative RNA helicase [Oryza sativa Japonica Group] dbj\|BAG92832.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE57460.1\| hypothetical protein OsJ_07688 [Oryza sativa Japon	-	-	0.0	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	eIF-4A-1	-	-	4.16e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	5.011e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	5.011e-10	%
Sma3	Lipopolysaccharide biosynthesis	00540	5.011e-10	%
Sma3	Folate biosynthesis	00790	5.011e-10	%
Sma3	Metabolic pathways	01100	5.011e-10	%

Source	Gene names
Sma3	AT3G13920; AT4G00660; At2g45810; At3g13920; At3g61240; At4g00660; CHLREDRAFT_188942; CHLREDRAFT_56005; DEH1; F4I18.21; F6N23.6; GSVIVT00000382001; GSVIVT00026802001; LOC_Os02g05330; LOC_Os02g42860; LOC_Os04g45040; LOC_Os06g48750; LOC_Os10g35990; MICPUCDRA

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	regulation of translation	GO:0006417	Biological Process	-
Sma3	mRNA transport	GO:0051028	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00660.2	RH8, ATRH8 RNAhelicase-like 8 chr4:274638-277438 FORWARD LENGTH=505	86%
RefSeq	Arabidopsis thaliana	NP_191975.2	DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002320116.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKI3

Fln msg:

Fln protein: MHPRANNGSNMANGRVGSSFQPFQRNPQQQQHQSYPQRNFQQQQYPQQRQTYQQSQPQPQYMVQNRNHQIHSEPVVHVAPEENHNEPEEKILTEDVGSSTQDWKAQLKIPQADARYRTEDVTATKGNEFEDYFLKKELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIEKIDQNKNTIQVLVLVPTRELALQTSQVCKELAKHLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLANKGVCNLKDCTMLVMDEADKLLSPEFQPLVEQLIRFLPKTRQILLFSATFPVTVKSFKDRFLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIKPIPPQIDQAIYCR*

Protein Length: 503

Fln nts: GACTACAATTTCTAGAACTTTTGGATGAAAGGTGCGGTAAAGACGCCTCAGAACAATATCAAGGGTTTCATGTTCCTTACGCTGGGTTGATTTCTTGCCAGGGTTTCGATTCCTTTACTGTTTGGTTTCAAAGAGCGATAGCTCTTGGCGATTTGGATGTTTCCACGTCGGTCGGTGGTGGTGCATTCGGATAAATAAATTGATTTTGTAGAAAGTCGGTTTGAGAACGGTGTCTTGCTCAGGTTTCTTTGCCGTCAGCTGACTTCATATAACAAGGCCTGAAAATATTTCAGTTGAAGCGGGGAAGCATAATATTCTTTCGAAAAGTGGTGGATCTAAATAAATGAAGTCCTCTTGTTGAAAATCTGTTGGACGTCATGCCTTGCTCTGTTTTCTGCTGTTCGAGGGCTTTAAAGCATTAAATCTGAAAAATCTTTGCTTTGAAGCGGCAAATCTGGGAAAAAACCTGCTTTGAAGCGGTAAACCTGGAAATATGCTTTGAAGCGGCATATCTGAAAAAGTTATCTTTCTTGGGACAAAACAGTTAATTCTTTTCTCTCCCTGCATGAAAGTTCTTTGGAGGGTTGTACATTTAACCGAAGCTTAAGCCTTGGGTTGATTGTGAATGAACAACCTCGGTGGTTCGCGGAGCGCTTTTAGATTGTTGTAAGATTCTTTCAATTGCTGGTGACTTAAAACATTTGCGTCGCTATTGGTCAGCTTTTGGAAATTATTGCGATTCAATCTTCGTGTAGATCGCTTTACCGGTTATTTTCTGGACAGCTGGACGAAGGCACAGATGCTGTAGACAGATTCGCTGTGTTTTTGATTATTCGTTTGAGCTGTAAATTTTTGTTTATCTTGTCTTTATTTCTGGGAAATCGCCAAATGCTATATTAAATATTGTACAAAGCGTGCGAAAGGAGCAACTCTGGGAGATGTTGTGGTAATATCTCTGAGAAGAGAATATTTGAGACAAAGCTTGTAGGGTACTGTCTATGGGAGCAGTTTTACCGTGTTCTATTTTGCCAATAGGCGGCCAGGATTTGGAGACTTTCGTGCATCAACTACCAGATCTGTGCATATTTTAGGGAAATTTTAGTAGTTTAATCAGAATCTGATATCCAAAACTTTTAATTTTAAGATTTCAAGGTCGAAGGATTCACAGATCAGTTTTTAGTCTAGGTCAACCGTGAAGCGATCTTTAAT_-_ATGCATCCCCGTGCTAATAACGGGTCAAACATGGCGAATGGCCGTGTAGGAAGCTCGTTTCAGCCATTTCAAAGAAATCCTCAACAACAGCAGCACCAATCATATCCTCAAAGAAATTTCCAGCAACAGCAATATCCACAACAGAGGCAGACCTACCAGCAATCACAACCACAACCGCAATATATGGTACAAAACAGGAATCATCAAATTCACTCTGAACCTGTTGTGCATGTTGCTCCAGAAGAAAATCATAACGAACCGGAGGAAAAGATACTGACAGAAGATGTTGGTTCGAGCACGCAAGATTGGAAGGCCCAGTTGAAAATACCACAAGCTGATGCTAGGTACAGGACTGAGGATGTTACAGCTACAAAAGGAAATGAATTTGAAGATTATTTTCTCAAAAAAGAGCTGCTCATGGGAATCTATGAGAAAGGGTTTGAAAGGCCCTCTCCAATTCAAGAAGAAAGTATTCCTATTGCTTTAACAGGGAGTGATATTCTTGCTCGGGCAAAGAATGGAACGGGAAAGACAGCTGCCTTTTGCATTCCAGCAATAGAGAAGATTGATCAAAATAAAAATACCATACAAGTTCTTGTGTTAGTTCCAACAAGAGAGCTTGCACTTCAGACATCACAAGTGTGCAAGGAGCTGGCCAAGCACTTGAATATTCAAGTAATGGTTAGTACGGGGGGAACTAGCTTAAAGGATGACATCATGCGCTTGTATCAGCCAGTACATCTACTTGTAGGCACACCAGGCAGAATTCTGGATCTGGCAAATAAGGGTGTTTGCAACCTGAAAGATTGTACAATGCTTGTAATGGATGAGGCTGATAAACTCCTCTCTCCAGAGTTTCAACCTTTGGTGGAACAGCTAATCAGATTTCTCCCTAAAACCCGCCAAATATTATTGTTCTCTGCTACATTTCCAGTCACTGTCAAATCATTTAAGGATAGGTTTTTGCGCAAGCCATATGTGATAAACCTTATGGATGAACTAACTCTCAAAGGTATCACACAGTTTTATGCATTTGTGGAGGAGAGGCAAAAGGTTCATTGTCTGAACACACTTTTTTCCAAGCTCCAAATCAACCAATCAATAATTTTCTGCAATTCTGTTAATCGAGTAGAACTCTTGGCCAAAAAAATTACGGAGCTTGGATATTCATGCTTTTACATCCATGCGAAGATGTTACAATCTCACCGGAACAGAGTATTCCATGACTTCCGTAATGGTGCCTGTAGAAATCTGGTGTCTTCAGATCTGTTTACGAGAGGAATAGATATTCAAGCGGTTAATGTTGTTATCAATTTTGACTTTCCTAAGAATTCAGAAACTTATTTGCATAGAGTAGGGCGATCTGGAAGGTTTGGTCATCTAGGACTCGCTGTAAATTTGATTACATATGAGGATCGGTTTAATTTGTACAAGATTGAGCAGGAACTTGGCACTGAAATAAAGCCAATCCCACCTCAAATAGATCAAGCCATTTACTGCAGATAG___AGGGATGAGGGCATACGAGTATTTGGCATTGTGTTATATAGTTGCAAATTAATGAGGGTTCGGCTGGCATTACATTTCTTTGAAATTTCAACTTAGAAGGGGCACAGACAAATTCCGAAACATGCAACATATATTTCCCTATGCCGATGCATGGGAGGACCATTCAGTGCTGTAGATGGGCAGCATTTATTTACAGCCATGGATCATGTATGCACTCTTGCAAGACGCCTCACATGCAATCCCTTTTATGTACAGAATGCTGTTGAGGTCTGGATATTTGGAAAATTGTGTATTGCAAGTCAATGTGCTGTGAAATAAGCGCACATTCGGGATTAATCCAGAATGTAGGCTGCTTTGATGTATAATTTGATTCCATATGAACAATGGACTTATGTGCTAGGGCATTTGGACTGAGAATATTCTGCTTCTGTTTTAAGTTGCCAAGGTAGACTCAAATTATCCCCAGTGACAGTTTTTGTTTAGAAGATATTTTATTATTATTATGTTTAGTGACTCAAATTGCTAATTTCTGATGCTTATCAAATTATTGTCGAGCTAAGAAACGTTTGAGTTTGGATATTTTGCGTATATCTAATAATATAGTTATTGACGAATAAGAATATTTTCGGTTGGACTTTGTTGTGTACTAGTTATTTGGGATGGAAATCCACACGCCTAGGTGATCTCCTAAGATGAACCACTGATGTCTAGCGACCGGAAAGGACTCGACTGTTATTTTTATTTGGTTAATTCCAAAAAAAAAAAGAGTGTTTGAGTATATGAT

Fln Alignment:

Contig4067___RNHQ-------IHSEPVVHVAPEENHNEPEEKILTEDVGSSTQDWKAQLKIPQADARYRTEDVTATKGNEFEDYFLKKELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIEKIDQNKNTIQVLVLVPTRELALQTSQVCKELAKHLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLANKGVCNLKDCTMLVMDEADKLLSPEFQPLVEQLIRFLPKTRQILLFSATFPVTVKSFKDRFLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIKPIPPQIDQAIYCR
B8LKI3______________RNHQQWVSRVQIQAEKDAAAAKRGNPSEEEKRVQSGDVDPSVQDWKSQLKIPPPDSRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPKKNSIQVLLLVPTRELALQTSQVCKELAKHLKIQIMVTTGGTSLKDDIMRLYQPVHILVATPGRVLDLTKKGVCNLKDCAMLVMDEADKLLSPEFQPLVEQLIGFLPENRQILLYSATFPVTVKSFKDKYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVCSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIQQIPPQIDQTVYCR

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
660		20	80		0.995493
1144		11	88		0.923564
1199	12	87			0.992554
1200		12	87		0.992554
1300		85		14	0.993533
1403	90		10		0.90298
1447		88		11	0.923564
1780	25	16		58	1.0
1781		83		16	0.999991
1788	50	33			1.0
2056		85		14	0.993533
2101		87		12	0.992554
2179	10	90			0.90298
2451	10	90			0.90298
2452	10	90			0.90298
2557			87	12	0.992554
2724	87		12		0.992554
3140	12		87		0.992554
3338	75	25			1.0
3348	14		14		0.984337
3377	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
3207	3219	TTA TTA TTA TTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain