SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4065

Length: 1262 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4065

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phospholipase A2 family protein [Arabidopsis thaliana] ref\|NP_001031744.1\| Phospholipase A2 family protein [Arabidopsis thaliana] gb\|ABD19671.1\| At4g29070 [Arabidopsis thaliana] gb\|AEE85582.1\| Phospholipase A2 family protein [Arabidopsis thaliana] gb\|AEE8	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	Gene names
Sma3	AT4g29070; At4g29070; F19B15.100; GSVIVT00022277001; OsI_27179; PHYPADRAFT_82626; POPTRDRAFT_706528; RCOM_1478210;

Source	GOs	Term	Type	Identity
Sma3	phospholipase A2 activity	GO:0004623	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phospholipase A2, eukaryotic	IPR001211	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29070.1	Phospholipase A2 family protein chr4:14322109-14323035 FORWARD LENGTH=259	66%
RefSeq	Arabidopsis thaliana	NP_001031744.1	Phospholipase A2 family protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002298468.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMW3

Fln msg: your sequence is shorter than subject: 254 - 480

Fln protein: QSRKPPQKNISRNSVKENSSKPPPKKFVVWEHFWQIHQIERVADTIPRPESNTSHGRTKNSRPQKDRLGIWEHIQGMSHPWNAKSGEHARKVELKQPEVVDSEFSMPPFTPYMAKLPWHRGPRAFLSQLFPRYGNYCGPNWSSGKDRGGLLWNKKPIDWLDYCCYCHDMGYDTHDQAEMLKADIAFLECLEKTQMKTKGNPLIAEAYITMCITGLRNILIPYRKQLLKPMQAQHILASKISGLKSRNNGVQHQ*

Protein Length: 255

Fln nts: CACAGTCAAGAAAGCCTCCCCAGAAAAATATCAGTAGAAATTCGGTAAAAGAAAATAGCAGCAAGCCACCACCGAAAAAGTTTGTAGTTTGGGAACATTTTTGGCAGATACATCAAATCGAAAGAGTCGCTGACACCATCCCTAGGCCAGAGAGCAATACAAGTCATGGAAGAACAAAGAACAGCAGACCTCAGAAGGATAGGCTTGGGATCTGGGAACATATTCAAGGGATGAGTCATCCATGGAACGCTAAATCTGGCGAACACGCCAGAAAGGTGGAATTAAAACAGCCTGAAGTAGTAGATTCAGAATTTTCTATGCCTCCATTCACACCTTACATGGCCAAGCTACCATGGCATAGAGGTCCCAGAGCATTTCTTTCACAACTGTTTCCTCGTTATGGTAACTATTGTGGGCCGAATTGGTCAAGTGGGAAGGACCGAGGTGGTCTTCTTTGGAACAAGAAACCAATTGATTGGTTGGACTATTGCTGTTATTGCCATGATATGGGTTATGATACACATGATCAAGCTGAGATGTTGAAAGCAGATATTGCTTTTCTTGAATGCTTGGAGAAAACTCAGATGAAGACAAAAGGAAATCCTCTCATTGCCGAAGCTTACATAACAATGTGTATAACAGGCCTGAGGAACATCCTTATACCTTACCGGAAGCAGCTTTTGAAGCCGATGCAAGCACAACATATTTTGGCCAGTAAAATTAGTGGCTTGAAGAGCAGAAACAATGGTGTACAACATCAATGA___ACATCCTCAACAGTAAATTTCTGATGTCTTATGAAGCAACATTTGCCGAGAAATCATTTTTAAGAAAGTTGTCTCTTTGTATTTTATATTGATAGTTATCTAAAATGTATAGGTCAGAGGCTTTTTGTTGTGGAAGCTATTTCTTTGGGCTTTGTACTGTAATTGTTGTAGCAGCATTTCTGATGTCTTATGGAGCAGCAATTGCCGAAGAAATCACTTTTAAGAAAGCTGTCTCTTTGTATTTTATGTTGATATTTTTGAATAGTGTATAGGTCAGGGGATTTTGTTGAGGAAGCTATTTCTTTGGGCTGTGTACTGTAATGATTGAAGCAGCATTTGAAGCGCTGTTTAAGGGCCCCTCTCTTTGCATTGAATGCCGGTGAAACAAAAGACAGAGAAGGGAGGCTATCTCCTGGCAATACTAAAAATCAAAGGTGCATATTCCTAAACACGGCCCCACTATATATATTGCCTTGTTACGTATTATTAACACAAGGC

Fln Alignment:

Contig4065___QSRKPPQKNISRNSVKENSSKPPPKKFVVWEHFWQIHQIERVADTIPRPESNTSHGRTKNSRPQKDRLGIWEHIQGMSHPWNAKSGEHARKVELKQPEVVDSEFSMPPFTPYMAKLPWHRGPRAFLSQLFPRYGNYCGPNWSSGKDRGGLLWNKKPIDWLDYCCYCHDMGYDTHDQAEMLKADIAFLECLEKTQMKTKGNPLIAEAYITMCITGLRNILIPYRKQLLKPMQAQHILASKISGLKSRNNGVQHQ
B8LMW3______________QSSKPPQKNNNRNWVKENSSKPPQKRFGVWEHFWQIHQIERVNDTIPRPESDRNHGRTKNRKPQKGRLGIWEHIQGMSLPWNAKSGEQARKVELKQLEVVDSEFSMPSFTPYMAKLPWHRGPRAFLSQLFPRYGNYCGPNWSSGKDRGALLWDKKPIDWLDYCCYCHDIGYDTHDQAEMLKADIAFLECLEKTQMKTKGNLLIAESYISMCITGLRNILIPYRKQLLKPMQAKNILASKISRLNSRNNAVQHQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
873		14		85	0.993533
1032			75	25	0.996473
1036	75		25		0.996473
1038	25		75		0.996473
1039			25	75	0.996473
1088			50	50	1.0
1124		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain