SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4051

Length: 1344 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4051

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TSM0_PHYPA	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Ebs-bah-phd domain-containing protein	-	-	1.191e-14	-

Source	Gene names
Sma3	AT4g04260; AT4g22140; AT4g39100; At4g22140; At4g39100; CHLREDRAFT_193681; EBP1501; EBP1502; EBP1503; EBP1504; EBP1505; EBP1506; EBP3501; EBP901; EBP902; EBP903; EBP904; EBP905; EBP906; ES43; F19H22.200; LOC_Os03g58530; MICPUCDRAFT_30544; MICPUN_77910; OJ1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22140.1	EBS PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein chr4:11728556-11730230 REVERSE LENGTH=234	69%
RefSeq	Arabidopsis thaliana	NP_001031695.1	PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002321145.1	ebs-bah-phd domain-containing protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABY9

Fln msg:

Fln protein: MAKSKSVAKVVLQSYSIKGTNKLVKAGDCVLMRAQDPEKPPYVARIESIEIDGKKKNVNVNVRWYYRPEESIGGRRQFHGVKELFLSDHYDVQSADTIEGKCTVHSFKNYTKLESVGSEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEACKDWFHPACLNMTINQLKTIEHFICQDCSDDSKRKPRNGAKDSSSLETKQPEAKRRRR*

Protein Length: 220

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAGACAACGGGATGGTGAAATATAATGCGGGACGGCTTCCTGTATCCACTTTCTTTCTTTATTTTCTTTCTGTCTTACTGTTAAATGTTGTTCAGCAGAAGGGAGAGAAGAAGGGTTAGGGTTTG_-_ATGGCGAAATCGAAATCGGTAGCGAAGGTCGTCTTGCAATCTTACAGCATCAAGGGTACGAACAAGCTCGTTAAAGCCGGGGACTGCGTATTGATGCGCGCCCAGGATCCCGAGAAACCTCCATACGTAGCGAGAATAGAGAGCATCGAGATCGATGGCAAGAAGAAGAACGTAAACGTGAACGTGCGGTGGTATTATCGTCCCGAGGAATCGATCGGTGGGCGGCGTCAGTTCCATGGCGTTAAAGAACTCTTCCTGTCGGATCACTATGATGTCCAGAGCGCGGACACGATCGAGGGTAAATGCACCGTGCACAGCTTTAAGAATTACACGAAGCTGGAGTCGGTAGGGTCGGAGGATTATTTCTGTCGTTTTGAGTACAAGGCTGCCACGGGAGGGTTCACGCCTGATAGGGTTGCCGTATATTGTAAATGCGAAATGCCCTACAATCCCGACGATTTGATGGTGCAGTGTGAAGCGTGTAAAGACTGGTTCCATCCTGCTTGCCTCAACATGACCATAAATCAACTCAAAACAATTGAGCATTTTATATGCCAAGATTGCTCAGATGATTCTAAAAGGAAGCCACGAAATGGTGCAAAAGATTCCTCATCTCTTGAAACAAAGCAGCCGGAGGCAAAACGGAGGAGGAGGTGA___GAATTTATCGGGCAATTTACCATTTCTGAAGAACAATATCAGATAATGAGGTTTATGAACTGAACTAGATTAAAGTGGCATGACTCCATATATATATATATGTGGATCACAAGGCTTCATGAAGTTGGAATTTCCTATAGTTGTATGTCATTGGGAAAACTGCTTGAAATATAAGTGCTGCAATGTGTCCCTTGGTGGGCGATATCTATTTGGTGAAGTTTGGCTTTTAAAATTTAAAATTAAACAAAGAGTTGAAACTAATATTTTCAGGTTGATCTATTGGACATAACAGTGAGGGAAATATGTTGCAACATAGTCTATTGCACTGCACTTGAAGATAGCTGGTTCCCCTTCAAAAAGCAACACACATGGACTGTTAGCATTCGTGCATTTCAAGGTCATATGATGCAAACAGGCAACTTTGTTCTTGTATTTATATTGTAAATGGCCAGGCTTACAACTTTTTATAAACTGTGACGTTTGTAAGAGATACATCGACTCTTTTCCCCTTTTTTTCTTTTCTTTTC

Fln Alignment:

Contig4051___MAKSKSVAKVVLQSYSIKGTNKLVKAGDCVLMRAQDPEKPPYVARIESIEIDGKKKNVNVNVRWYYRPEESIGGRRQFHGVKELFLSDHYDVQSADTIEGKCTVHSFKNYTKLESVGSEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEACKDWFHPACLNMTINQLKTIEHFICQDCSDDSKRKPRNGAKDSSSLETKQPEAKRRR
D5ABY9______________MAKSKPMKKV-LDSYTIKGTDKVVKVGDCVVLRAEDAQKPPYIARVEKIEADGRGNHVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQVKKMDHFFCSDCIKEDDMKLRNSGKDSPPLEQKHPETKRRK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
648	80			20	0.995493
785	25	75			0.996473
786	75		25		0.996473
787	75	25			0.996473
852	50		50		1.0
908		22		66	1.0
909	83			16	1.0
911	82	17			1.0
913	82			17	1.0
915	82	17			1.0
1311	33			66	0.997452
1313	66	33			0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
905	918	AT AT AT AT AT AT AT	14
1330	1344	TTTTC TTTTC TTTTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain