SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4018

Length: 3295 nt

UniGene Fasta

>sp_v3.0_unigene4018
ATAGACTAAACAAAACGAAGAAGAAGAGGAAGAAGAACGGAGAAGTAGAAAAATTTTGGCTGTCGATATCGATACCGGAAAGCTAGAGGAGCAGCGGTAGCTGATGAAAGCTTAGAACGCAAGTCAGGGACCCGCAGGCTGTGAAAAAATTGAACAAATTCAAGGCAAAAATGGCCAAGAAAACCGTGTTATAAGTTTCAGTTTTGAGCATGAAGTCCGGCGCAAGGCAGATCAAATCTCCAAGCGGCGGCGTACAGAAAAGCCCTAGTAATGTAAGTGGAAGGAAAACCATGAGGAAATATCCTGTGACAAGCGACAGAAGATAAGCCGTGATCTGCTCGCTGCTGGAGTGATGGCGGACCCGAAGCTGAGGATTCGCCATGCGTTTTCCGTGGTAAATATGGGGCAAGAAACCGGCGATATTAGTCACGTTACTACTCCCAGCGGCTCCTCCAACGGAAACAATGAATTGGCCGAGTTTTCTAAGGAGGACGTCGAGGCGCTCTTGAATTTGAAGATGAAGGGTAAAACTAAGTTCGATTATAAGGGGAAATGTGAGCAAATGACGGACTATATCAAGAAACTCCGAGCATGCATTCGCTGGTTCCAGGAGATGGAAGAGGGTTGTGTGTTGCAGAAGGAACAGCTGCAAAACGAGTTGTCAAACGAGAGAAGGGAACGCAAGGAAACAGAGGATGCGCTGAAGAAGAAGGACGAAGAGCTAAGCATGACCATCTCTGAACTGAGGAAAACATGCTCCTCTCTTGAAGAAAAACTTACGAAAACAGAAGCTGATAAAGAGGAAAGCATTCGAGCTCGGCAGAAAGACATAGAAGCTCGGAAAGCTGCAGAAAAAGCAAAGTCTTACCTGTTAGAAGAACGCGATAAAGCACAGCAAGAGGCGTCAAGTGCAAATCAGCAGGTGGCATCACTTCAGGATATTAATAAACGATTACAAGAGTACAATACTAGTTTGCAACATTATAACAGCAAGCTCCAGAGTGATGCTGGCACTGCTGCAGAGACCATTTCTAGAATACAGAAAGAAAAATCAACTATGATGGAAACTCTCAGTAGCTTAAGAGGTTACTCTGCCGCAGTTCAGGACCAGCTCAGTGTTACTAAAGCTTCACTGCAAGAGGCTCAAAAGCAGAAAAAAACCTTTGCAGAAGAGAATGACCGTCTCCGTGGAGAGCTTCAACGTGTTACAGATGAGAGAGACCAGCAGGCTTCTCAGCTCCAGACGTTGTCTGTTGAGGTAGCAAAGTACAAAGAATGCACTGGAAAATCTGCTGCTGAGTTGGAACAGCTTGCAAACAAGACAACATATTTGGAGGAGAGTTTCTCCTCCCAGAGCGAAAAAATAAGAAGTTTGCAGCTGCAGCTAGACATTGCAAATCAGAAGTTAGAGATTGCAGAGTCATCAGCATTGCAATATAAAACACAGTGTTTTGAGCAAAATCGAAACGTAGAGGAACTTCAAAGTCGCCTTTCAGAGGCTGATCTTCAAATTTTTGAAGGAGAGCTGTTACGGAGGAAGTTGCACAACACTATATTGGAACTCAAAGGCAACATAAGAGTTTTCTGTAGGGTAAGGCCATTATTACCTGAAGATGAATGTGCTGGCGAGCCCTCGGTTGTGCTATATCCTACATCGACTGAGTTAGTTGGTCGGGGCATTGATCTGATACAGAGTCCTGGGCAGAAGCATTCATTTACTTTTGACAAGGTATTTAGCCATGATGCCAGGCAAGAGGAGGTGTTTGTGGAGATTTCACAGCTTGTTCAAAGTGCTCTTGATGGATACAAGGTTTGCATCTTTGCCTATGGACAAACGGGCTCTGGGAAAACGTACACGATGCTTGGTAATCCAGATTTTCTTGAACACAAAGGACTTATACCAAGATCTTTGGAGCAGATTTTCAAAACGAGCCAAACACTTTCTTCTCAAGGATGGAGCTTCAGAATGCAGGCATCAATGCTGGAGATATACAATGAAACTATCCGAGATCTTTTAGTTACCAGTAAATTTGGCAGTGCAGATGGACCTCGTTCTGACAATGGCACTCCAGTAAAGCAATATACTATTAAACATGACCAAAATGGCAACAGTTTTGTGTCAGATCTGACCATAGTGGATGTCACCAGTTGGAATGAGGTTTCTTCCCTTCTACACAAGGCTGCTCAGAGCAGGTCAGTGGGCAAAACAGCAATGAATGAACAGTCTTCTCGAAGTCATTGTGTCTTCACGTTGCGTATTTTAGGAGCAAATGAGAGCACAGAGCAACAAGTGCATGGAGTTCTGAATCTGATTGATCTGGCTGGAAGTGAACGTCTTTCCCGTAGTGGCTCTACTGGAGATCGCCTGAAAGAAACTCAGTCTATTAACAAGAGTTTGGCATGTCTGGGAGATGTAATTCTTGCAATTGCCAACAGGGAGCAGCATGTACCATACAGGAACTCAAAACTTACATATCTTCTCCAACCTTGCCTGGGTGGAGATTCAAAGACATTGATGTTTGTTAATATATCTCCTGATGCAAAGTCCTTGAATGAATCTCTTTGTTCATTACGCTTCGCTGCAAAAGTAAATGCATGTGAAATTGGGGTACCTCGGAGACAAACTCATATGCGCACTTCAGATTTTCGATTGAGCTACAGCTAACGGGCATGTGATTTGATTATCTTAATGAAATTGTTTGATCCTGATGTTAGCTGATGCTACCTCGGAGGGATTTAGATCTACAGTATGGTACTTCTAAGTGAGGTCTACGACTACGCCAAGGCATCATCTAGAGGCAAAATAACAGGAGTTATTTATCAATTTCTTATCCCTTCCATTTCCAAATGTGGTCCTGGGTTGAATATCAAGTAGACAAGATATCTTTGGAGCCAGTGTCAACAATGTTTGTTGACACTTGCTGTATCTGGATGTGTTTACAATTCGGATAGAGTCGAGTACAGGAGGCTTGATTTGGTAGCATACACAGGTGAAGGCCATGAAGTTGACTCACGTTGTATCTCCATTTAAAAAAAGAAATATTTTGTGAAAATATTGTAAGAAATTAAATTACTTGAGAGAATGTAAGATTTATGGAAATTTCTGGAGCAAGGATTGCCCGATATTTGTCAAATAGTTGCGAGATTTCGAATTTGTGAAATTCAAGTGCATTTATTATTTGTCCTTCTCACCATGCTGACAGTAGTGTCATTCAGGTTCACGATCATATAAACTGATCAAGTTCACTATCATATACACAGATTAAGTTATAACATCTCTGTTTCATTGTTTTGC

Ace file of the UniGene sp_v3.0_unigene4018

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin-like protein [Arabidopsis thaliana]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Sma3	Kinesin heavy chain	-	-	1.969e-11	-

Source	Gene names
Sma3	AT4g05190; ATK1; ATK2; ATK3; ATK4; At2g47500; At4g05190; At4g21270; At4g27180; At5g27000; At5g54670; At5g65930; B1317D11.110; CHLREDRAFT_102475; CHLREDRAFT_119255; CHLREDRAFT_120667; F2P16.12; F7J7.210; FLA10; GSVIVT00012554001; GSVIVT00012976001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	minus-end kinesin complex	GO:0005872	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	spindle microtubule	GO:0005876	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	minus-end-directed microtubule motor activity	GO:0008569	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	anastral spindle assembly involved in male meiosis	GO:0009971	Biological Process	-
Sma3	spindle assembly	GO:0051225	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G05190.1	ATK5 kinesin 5 chr4:2675338-2679482 FORWARD LENGTH=790	59%
RefSeq	Arabidopsis thaliana	NP_192428.2	kinesin 5 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002316704.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: E0CT47

Fln msg:

Fln protein: MADPKLRIRHAFSVVNMGQETGDISHVTTPSGSSNGNNELAEFSKEDVEALLNLKMKGKTKFDYKGKCEQMTDYIKKLRACIRWFQEMEEGCVLQKEQLQNELSNERRERKETEDALKKKDEELSMTISELRKTCSSLEEKLTKTEADKEESIRARQKDIEARKAAEKAKSYLLEERDKAQQEASSANQQVASLQDINKRLQEYNTSLQHYNSKLQSDAGTAAETISRIQKEKSTMMETLSSLRGYSAAVQDQLSVTKASLQEAQKQKKTFAEENDRLRGELQRVTDERDQQASQLQTLSVEVAKYKECTGKSAAELEQLANKTTYLEESFSSQSEKIRSLQLQLDIANQKLEIAESSALQYKTQCFEQNRNVEELQSRLSEADLQIFEGELLRRKLHNTILELKGNIRVFCRVRPLLPEDECAGEPSVVLYPTSTELVGRGIDLIQSPGQKHSFTFDKVFSHDARQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMLGNPDFLEHKGLIPRSLEQIFKTSQTLSSQGWSFRMQASMLEIYNETIRDLLVTSKFGSADGPRSDNGTPVKQYTIKHDQNGNSFVSDLTIVDVTSWNEVSSLLHKAAQSRSVGKTAMNEQSSRSHCVFTLRILGANESTEQQVHGVLNLIDLAGSERLSRSGSTGDRLKETQSINKSLACLGDVILAIANREQHVPYRNSKLTYLLQPCLGGDSKTLMFVNISPDAKSLNESLCSLRFAAKVNACEIGVPRRQTHMRTSDFRLSYS*

Protein Length: 772

Fln nts: ATAGACTAAACAAAACGAAGAAGAAGAGGAAGAAGAACGGAGAAGTAGAAAAATTTTGGCTGTCGATATCGATACCGGAAAGCTAGAGGAGCAGCGGTAGCTGATGAAAGCTTAGAACGCAAGTCAGGGACCCGCAGGCTGTGAAAAAATTGAACAAATTCAAGGCAAAAATGGCCAAGAAAACCGTGTTATAAGTTTCAGTTTTGAGCATGAAGTCCGGCGCAAGGCAGATCAAATCTCCAAGCGGCGGCGTACAGAAAAGCCCTAGTAATGTAAGTGGAAGGAAAACCATGAGGAAATATCCTGTGACAAGCGACAGAAGATAAGCCGTGATCTGCTCGCTGCTGGAGTG_-_ATGGCGGACCCGAAGCTGAGGATTCGCCATGCGTTTTCCGTGGTAAATATGGGGCAAGAAACCGGCGATATTAGTCACGTTACTACTCCCAGCGGCTCCTCCAACGGAAACAATGAATTGGCCGAGTTTTCTAAGGAGGACGTCGAGGCGCTCTTGAATTTGAAGATGAAGGGTAAAACTAAGTTCGATTATAAGGGGAAATGTGAGCAAATGACGGACTATATCAAGAAACTCCGAGCATGCATTCGCTGGTTCCAGGAGATGGAAGAGGGTTGTGTGTTGCAGAAGGAACAGCTGCAAAACGAGTTGTCAAACGAGAGAAGGGAACGCAAGGAAACAGAGGATGCGCTGAAGAAGAAGGACGAAGAGCTAAGCATGACCATCTCTGAACTGAGGAAAACATGCTCCTCTCTTGAAGAAAAACTTACGAAAACAGAAGCTGATAAAGAGGAAAGCATTCGAGCTCGGCAGAAAGACATAGAAGCTCGGAAAGCTGCAGAAAAAGCAAAGTCTTACCTGTTAGAAGAACGCGATAAAGCACAGCAAGAGGCGTCAAGTGCAAATCAGCAGGTGGCATCACTTCAGGATATTAATAAACGATTACAAGAGTACAATACTAGTTTGCAACATTATAACAGCAAGCTCCAGAGTGATGCTGGCACTGCTGCAGAGACCATTTCTAGAATACAGAAAGAAAAATCAACTATGATGGAAACTCTCAGTAGCTTAAGAGGTTACTCTGCCGCAGTTCAGGACCAGCTCAGTGTTACTAAAGCTTCACTGCAAGAGGCTCAAAAGCAGAAAAAAACCTTTGCAGAAGAGAATGACCGTCTCCGTGGAGAGCTTCAACGTGTTACAGATGAGAGAGACCAGCAGGCTTCTCAGCTCCAGACGTTGTCTGTTGAGGTAGCAAAGTACAAAGAATGCACTGGAAAATCTGCTGCTGAGTTGGAACAGCTTGCAAACAAGACAACATATTTGGAGGAGAGTTTCTCCTCCCAGAGCGAAAAAATAAGAAGTTTGCAGCTGCAGCTAGACATTGCAAATCAGAAGTTAGAGATTGCAGAGTCATCAGCATTGCAATATAAAACACAGTGTTTTGAGCAAAATCGAAACGTAGAGGAACTTCAAAGTCGCCTTTCAGAGGCTGATCTTCAAATTTTTGAAGGAGAGCTGTTACGGAGGAAGTTGCACAACACTATATTGGAACTCAAAGGCAACATAAGAGTTTTCTGTAGGGTAAGGCCATTATTACCTGAAGATGAATGTGCTGGCGAGCCCTCGGTTGTGCTATATCCTACATCGACTGAGTTAGTTGGTCGGGGCATTGATCTGATACAGAGTCCTGGGCAGAAGCATTCATTTACTTTTGACAAGGTATTTAGCCATGATGCCAGGCAAGAGGAGGTGTTTGTGGAGATTTCACAGCTTGTTCAAAGTGCTCTTGATGGATACAAGGTTTGCATCTTTGCCTATGGACAAACGGGCTCTGGGAAAACGTACACGATGCTTGGTAATCCAGATTTTCTTGAACACAAAGGACTTATACCAAGATCTTTGGAGCAGATTTTCAAAACGAGCCAAACACTTTCTTCTCAAGGATGGAGCTTCAGAATGCAGGCATCAATGCTGGAGATATACAATGAAACTATCCGAGATCTTTTAGTTACCAGTAAATTTGGCAGTGCAGATGGACCTCGTTCTGACAATGGCACTCCAGTAAAGCAATATACTATTAAACATGACCAAAATGGCAACAGTTTTGTGTCAGATCTGACCATAGTGGATGTCACCAGTTGGAATGAGGTTTCTTCCCTTCTACACAAGGCTGCTCAGAGCAGGTCAGTGGGCAAAACAGCAATGAATGAACAGTCTTCTCGAAGTCATTGTGTCTTCACGTTGCGTATTTTAGGAGCAAATGAGAGCACAGAGCAACAAGTGCATGGAGTTCTGAATCTGATTGATCTGGCTGGAAGTGAACGTCTTTCCCGTAGTGGCTCTACTGGAGATCGCCTGAAAGAAACTCAGTCTATTAACAAGAGTTTGGCATGTCTGGGAGATGTAATTCTTGCAATTGCCAACAGGGAGCAGCATGTACCATACAGGAACTCAAAACTTACATATCTTCTCCAACCTTGCCTGGGTGGAGATTCAAAGACATTGATGTTTGTTAATATATCTCCTGATGCAAAGTCCTTGAATGAATCTCTTTGTTCATTACGCTTCGCTGCAAAAGTAAATGCATGTGAAATTGGGGTACCTCGGAGACAAACTCATATGCGCACTTCAGATTTTCGATTGAGCTACAGCTAA___CGGGCATGTGATTTGATTATCTTAATGAAATTGTTTGATCCTGATGTTAGCTGATGCTACCTCGGAGGGATTTAGATCTACAGTATGGTACTTCTAAGTGAGGTCTACGACTACGCCAAGGCATCATCTAGAGGCAAAATAACAGGAGTTATTTATCAATTTCTTATCCCTTCCATTTCCAAATGTGGTCCTGGGTTGAATATCAAGTAGACAAGATATCTTTGGAGCCAGTGTCAACAATGTTTGTTGACACTTGCTGTATCTGGATGTGTTTACAATTCGGATAGAGTCGAGTACAGGAGGCTTGATTTGGTAGCATACACAGGTGAAGGCCATGAAGTTGACTCACGTTGTATCTCCATTTAAAAAAAGAAATATTTTGTGAAAATATTGTAAGAAATTAAATTACTTGAGAGAATGTAAGATTTATGGAAATTTCTGGAGCAAGGATTGCCCGATATTTGTCAAATAGTTGCGAGATTTCGAATTTGTGAAATTCAAGTGCATTTATTATTTGTCCTTCTCACCATGCTGACAGTAGTGTCATTCAGGTTCACGATCATATAAACTGATCAAGTTCACTATCATATACACAGATTAAGTTATAACATCTCTGTTTCATTGTTTTGC

Fln Alignment:

Contig4018___RIRHAFSVVNMGQETGDISHVTTPSGSSNGNNELAEFSKEDVEALLNLKMKGKTKFDYKGKCEQMTDYIKKLRACIRWFQEMEEGCVLQKEQLQNELSNERRERKETEDALKKKDEELSMTISELRKTCSSLEEKLTKTEADKEESIRARQKDIEARKAAEKAKSYLLEERDKAQQEASSANQQVASLQDINKRLQEYNTSLQHYNSKLQSDAGTAAETISRIQKEKSTMMETLSSLRGYSAAVQDQLSVTKASLQEAQKQKKTFAEENDRLRGELQRVTDERDQQASQLQTLSVEVAKYKECTGKSAAELEQLANKTTYLEESFSSQSEKIRSLQLQLDIANQKLEIAESSALQYKTQCFEQNRNVEELQSRLSEADLQIFEGELLRRKLHNTILELKGNIRVFCRVRPLLPEDECAGEPSVVLYPTSTELVGRGIDLIQSPGQKHSFTFDKVFSHDARQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMLGNPDFLEHKGLIPRSLEQIFKTSQTLSSQGWSFRMQASMLEIYNETIRDLLVTSKFGSADGPRSDNGTPVKQYTIKHDQNGNSFVSDLTIVDVTSWNEVSSLLHKAAQSRSVGKTAMNEQSSRSHCVFTLRILGANESTEQQVHGVLNLIDLAGSERLSRSGSTGDRLKETQSINKSLACLGDVILAIANREQHVPYRNSKLTYLLQPCLGGDSKTLMFVNISPDAKSLNESLCSLRFAAKVNACEIGVPRRQTHMRTSDFRLSY
E0CT47______________RTRQAFSVVNGGQENGG------PPSSAGSECGGIEFTKEDVEALLNEKMKGKNKFNLKEKCDQMMDYIRKLRLCIKWFQELEGSYLLEQEKLRNMLDCAERKCNELEVLMKNKEEELNSIIMELRKNCASLHEKLTKEESEKLAAMDSLTREKEARLAAERLQTSLTDELGKAQREHLSASQKITSLNDMYKRLQEYNTSLQQYNSKLQTELPTVNEALKRVEKEKAAVVENLSTLRGHYNALQDQFTLTRASQDEAMKQREALVNDVVCLRGELQQARDDRDRYLSQVEVLTTEVVKYKECTGKSFAELENLSLKSNELEARCLSQSDQIKALQDKLGAAEKKLQVSDLSAMETRTEYEEQKKLIHDLQNRLADAEIKIIEGEKLRKKLHNTILELKGNIRVFCRVRPLLADDS-AAEAKVISYPTSTEFFGRGIDLMQS-GQKHSFTFDKVFMPDAPQQEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTHTMMGRPGNPEQKGLIPRSLEQIFETRQSLKSQGWKYEMQVSMLEIYNETIRDLLSTNR-SCSDVSRTENGVAGKQYAIKHDGNGNTHVSDLTVVDVRSTREVSFLLDQAAQSRSVGKTQMNEQSSRSHFVFTLRISGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSLGESLCSLRFAARVNACEIGIPRRQTNMRPSDSRLSY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
2647	20			80	0.995493
2649			20	80	0.995493
2650		80	20		0.995493
2744	12			87	0.999964
2745		87	12		0.999964
2749	87	12			0.999964
2750	12		87		0.999964
2753		12		87	0.999964
2754			87	12	0.999964
2758		87	12		0.999964
2759	12			87	0.999964
2786	86		13		0.999973
2832		17		82	1.0
2898		14	85		0.999981
2950	16		83		0.999991
3101	55		44		1.0
3115	77	22			0.999999
3144		80		20	0.995493
3160		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain