SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4000

Length: 1366 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4000

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gb\|AAC09322.1\| dimethyladenosine transferase [Arabidopsis thaliana] dbj\|BAC42078.1\| putative dimethyladenosine transferase [Arabidopsis thaliana] gb\|AAO50630.1\| putative dimethyladeno	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Dimethyladenosine transferase	-	-	9.276e-09	-

Source	Gene names
Sma3	At1g01860; At1g01860/F22M8_1; F22M8.1; GSVIVT00026254001; MtrDRAFT_AC155886g27v2; MtrDRAFT_AC160924g3v1; Os02g0122900; OsI_05650; OsJ_05183; PFC1; PHYPADRAFT_161405; POPTRDRAFT_244291; POPTRDRAFT_244292; RCOM_1613710; T1N6.27;

Source	GOs	Term	Type	Identity
Sma3	rRNA (adenine-N6,N6-)-dimethyltransferase activity	GO:0000179	Molecular Function	-
Sma3	rRNA modification	GO:0000154	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ribosomal RNA adenine dimethylase	IPR011530	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01860.1	PFC1 Ribosomal RNA adenine dimethylase family protein chr1:304439-306275 REVERSE LENGTH=343	61%
RefSeq	Arabidopsis thaliana	NP_171690.1	Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002320768.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADG3

Fln msg:

Fln protein: MISAMHCYSSLRLLTPSSSSPFQPGGRDRGCCYSHSQGKTTKSSVGVSAASLRCASRAEDDYHSTLKALQSRGRFPRKSLGQNYMLNSAINELMVKEAQLKEGDVVLEIGPGTGALTNALVNAGAHVFAIEKDPHMAMLVSERFNDNGRVKVVQEDFTRYHIEPQIMSFSDSVVPSSNYGQIAKVVSNLPFNIATDVLKLLLPMGDIFSHVVLLLQDEMALRVVGSLPGTPEYRQINIFVNFYSDPEYRFKVERTNFFPQPNVDAAVVVFKLKQVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSLQHLCASSDVESALRTLGLPETSRPGELEMDDFVRLYNLLANQ*

Protein Length: 350

Fln nts: ATGAGATAAAACATCACAGTGTATCTGATGATTCATTGAGCGGAGCAAGAAGAAACGGCAGA_-_ATGATTAGTGCAATGCACTGCTACTCTTCGCTCAGACTGCTTACACCTTCATCCTCTTCCCCATTCCAACCAGGGGGCCGTGACCGTGGGTGCTGTTATTCTCACTCTCAAGGGAAGACCACCAAGTCAAGTGTTGGCGTCTCTGCTGCTTCTCTTAGGTGCGCTTCGAGAGCGGAGGACGATTACCACTCCACTCTCAAAGCTCTGCAGTCACGAGGTAGATTCCCCAGAAAGTCATTAGGCCAGAATTACATGCTGAACTCAGCTATTAATGAGTTGATGGTAAAGGAGGCTCAATTGAAAGAAGGTGATGTTGTTTTGGAGATTGGACCTGGAACTGGTGCTTTAACAAATGCTCTTGTAAATGCCGGTGCCCATGTTTTTGCAATTGAAAAGGATCCTCATATGGCCATGCTTGTTTCAGAGAGATTTAACGATAATGGAAGAGTGAAGGTAGTGCAAGAGGATTTTACAAGATATCATATAGAGCCTCAAATTATGTCATTTTCAGACTCAGTTGTGCCTAGCTCAAACTATGGACAAATAGCAAAGGTTGTCTCTAATCTGCCATTTAATATTGCAACAGATGTGCTAAAGCTACTTCTTCCCATGGGAGACATATTTTCCCATGTTGTGCTACTTCTGCAGGATGAAATGGCTTTGCGTGTGGTAGGTTCATTGCCAGGGACACCTGAATATCGTCAAATTAATATATTTGTCAACTTCTATTCAGATCCAGAGTACAGATTCAAGGTTGAAAGGACTAATTTCTTTCCCCAGCCAAATGTGGATGCAGCAGTTGTAGTATTTAAATTAAAGCAAGTTGTGGACTACCCTCATGTTGCCTCACCGAAGGGTTTCTTCTCAATGGTAAATTCAGCGTTCAACGGGAAACGTAAAATGCTTAGAAAATCACTTCAACACTTATGTGCGTCTTCTGATGTTGAATCTGCGCTCAGAACTCTTGGTCTTCCGGAGACATCGCGGCCTGGGGAGCTTGAAATGGATGACTTCGTTCGTTTGTATAATTTACTAGCTAATCAATAA___TTTGGTATTTTTATCAAAATCACCCTAATGTATTCAGCCTCTATCTCGATTGGAAAACATGGTAAATCGTAATTGTAATATTTGTACAGGTCTCTGGAGGGGTCACTCATATTCCCATATGTCTATATGTCTGTAGTGTAGGAGGCCTCACCCATATATTCTTAGTGTAAAACGATAAAAACAATATGAAATATGTTTTGAGTGTATGTTTTTAAGTGTAAAATGATACAAACAATATGAAATATGTTTTTAGTGTA

Fln Alignment:

Contig4000___MISAMHCYXXXXXXXXXXXXXFQPGGRDR----GCCYSHSQGKTTKSSVGVSAASLRCASRAEDDYHSTLKALQSRGRFPRKSLGQNYMLNSAINELMVKEAQLKEGDVVLEIGPGTGALTNALVNAGAHVFAIEKDPHMAMLVSERFNDNGRVKVVQEDFTRYHIEPQIMSFSDSVVPSSNYGQIAKVVSNLPFNIATDVLKLLLPMGDIFSHVVLLLQDEMALRVVGSLPGTPEYRQINIFVNFYSDPEYRFKVERTNFFPQPNVDAAVVVFKLKQVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSLQHLCASSDVESALRTLGLPETSRPGELEMDDFVRLYNLLANQ
D5ADG3______________MISAVHC-SSHRMLMPSSSSPFQPGGRECECECGCCYSHSQWKPSMSSLGVPAASPRCALRAEDDYHSTLKVLQSRGRFPRKSLGQHYMLNSAINELMVKEAQLKEGDVVLEIGPGTGALTNALVNAGAHVFAIEKDAHMAMLVSERFNNNGKVKVVQEDFTRCHIEPQILSFSTSIAPGSNYGQMAKVVSNLPFNIATDVLKLLLPMGDMFSHVVLLLQDEMALRVVGSSPGTPEYRQINIFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLKQVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSLQHLCASRDIESALRTLGLPETSRPGELEMDDFVRLYNLLNSQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
995		25	75		0.996473
1023	50			50	1.0
1047	25	75			0.996473
1131		66		33	0.997452
1176	66			33	0.997452
1177	66		33		0.997452
1179	33	66			0.997452
1180	33		66		0.997452
1183	66			33	0.997452
1189	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain