SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3964

Length: 2411 nt

UniGene Fasta

>sp_v3.0_unigene3964
TCAAAAATAAACTTCTGGAACCTGGGCTTGTGGATCATATTGTGGTTTCAAACAAATCTGTAGCTAAAGTTTATGTTCGAAATTCACCAAATAATTCTACCCAAAGTGAAAGCAGTGATGCAGAGATTCATGTCAGACGGACCTCCTCTGGGGGTGGCAGCCAACATAAGTATTCTTTTAATATTGGCAGTGTTGAATCCTTTGAGCAGAAGTTGGAAGATGCACAAGAAGCACTGGGTATTGATCCTCATGATTATGTTCCTGTAACATATGTTTCAGAAATGGTCTGGTACCAAGAGCTGTTGAGATTTGCACCAACATTATTGATTCTTGGGTCTCTTATTTACTTTGGGCGAAGAATGCAAAGTGGTTTAGGTGTAGGTGGACCTGGAGGCAAGGGTGGTCGTGGACTCTTTAACATTGGCAAAGCTAATGTGACGAAGCTAGATAAAAATTCAAAGGACAAGGTATTATTTAAGGATGTAGCTGGTTGTGATGAAGCAAAGCAAGAGATCATGGAGTTTGTGCATTTTCTTAAAAATCCTAAAAAGTACCAAGAGCTAGGAGCTAAAATTCCAAAAGGAGCCCTTTTAGTGGGCCCTCCTGGCACAGGGAAAACTCTCTTGGCAAAAGCTACAGCAGGGGAAGCAGGAGTCCCTTTTCTTTCAATTTGTGGCTCAGATTTCATGGAGATGTTTGTTGGTGTTGGGCCTTCTAGAGTTAGAAGTTTGTTTGCTGAAGCCAGGCAGTCTGCACCAAGTATTATCTTTATTGATGAGATTGATGCAATTGGTCGGGCAAGAGGTCGTGGAGGGTTAGCAGGAGCAAATGATGAAAGAGAAAGTACTCTCAACCAGACCCTAGCAGAAACGCATGGTTTTGGGACAACTTCAGGTGTAGTGGTGCTTGCAGGCACGAACAGACCTGACATCATAGACAAGGCCCTTCTCAGGCCCGGGCGATTTGATCGTCAAATTTCTATTGATAAGCCTGACATAATTGGTCGGGAACAAATCTTCCAAATTTATCTGAAGAAACTTAAGCTTGACCAAGATCCAAAATACTACTCTCAACGCCTTGCTGCACTGACTCCAGGATTTGCAGGAGCAGATATTGCAAATGTGTGCAATGAGGGTGCTCTTATTGCTGTGAGGAATGAGAAGACTGAGATCAATATGTCACACTTTGAGGCAGCTATTGATAGAATTATTGGTGGTTTGGAGAAGAAAAATAAGGTAATTAGTAAGGAGGAAAGGAGGACTGTAGCATATCATGAATCAGGTCATGCTGTAGTTGGATGGTTCTTGGAGCATGCAGAGCCACTTTTGAAAGTAACAATTGTTCCTCGCGGCACTGCAGCATTGGGCTTTGCTCAATATTTACCAAATGAGAATTTGCTGATGACAAGGGAGCAGCTATTTGACATGACATGCATGACACTTGGAGGTCGGGCTGCTGAACAGGTTTTGTTGGGAAAAATTTCAACTGGAGCTCAAAATGACTTGGAGAAGGTGACAAAGATGACATATGCACAAGTTGCATTATATGGTTTTAGTGAAAAAATTGGTCTTCTATCTTTTCCTCAAAGGGAAGATTCTTATGAAATGACTAAGCCTTACAGTAATGAAACAGCAGAAATTATTGATAATGAAGTACGTGAGTGGGTAAATAAAGCCTATGCAAGGACCTTAGAGTTAATTGAACAGCACAGGGAAGGAGTGGAAAAGATGGCTAAATTGCTTCTTGAAAAAGAGGTTTTGCATCAGGATGATTTAGTGCAAGTGCTTGGCGAGCGTCCATACAAGTCAAAAGAGCCAACTAATTATGATCGTTTCAAACAAGGGTTTCAAATTGGAGATGTTGGGGAGGATGGAACGGCACAAAATGATAAAGAGGATAATGTCTCATCAGAAGCTGAGACAGCAGTGCTTACTTAGAAGGGCATCTGGAAACATTATTAAAGCTGAGAGTCATGCTTACTAAAATATCCTGATGATTATAACATCTGCTAAATTAGAGAGTGTAATAAACAAGGCTAAAAATGAGATATGATAAGAAGAAATTCAGGCAATCTCTTGTGACAGGATTTCAAGTGTAAAAATTGGACCCATCCTCTGTATGTTGCAGACTGTCTATTATTGAGTGGATGTTATATTGTTTTAGGGAAATATGGGCTGTCTCCAGGAAAATCCCAAATTGATTGCTTTTACTAATCTTCCTGAGGGACAGGAACAGGAAGATGCTGTATTATATGTTGGTTAAATGTCCTTAATCTTTTGCTAAGAACAAGGAACTTGAATCTTCATCTCACATCTTGTGAACTGTGGTTCAGCTTAGATTGTAAACTTTATGGAAACATTCTTCTTTTTGAGAAACCTGATCTTGTGCTGATGGAGTTTTTTTTTAAACAG

Ace file of the UniGene sp_v3.0_unigene3964

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3); K08956 AFG3 family protein [EC:3.4.24.-]	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Cell division protease ftsH homolog	-	-	1.848e-13	-

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	-
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	6.707e-16	-

Source	Gene names
Sma3	AAA; AT2G30950; AT5G42270; At1g06430; At1g07510; At1g50250; At2g26140; At2g29080; At2g30950; At3g02450; At3g02450/F16B3.8; At3g47060; At3g56690; At5g15250; At5g42270; At5g53170; At5g58870; B1040D09.10-1; B1040D09.11; B1151A10.24-2; B1151A10.26-1; CHLREDRA

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	photosystem II repair	GO:0010206	Biological Process	-
Sma3	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-
Sma3	regulation of apoptotic process	GO:0042981	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Caspase Recruitment	IPR001315	-	-
Sma3		IPR001984	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR017909	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G29080.1	ftsh3 FTSH protease 3 chr2:12489911-12492999 REVERSE LENGTH=809	79%
RefSeq	Arabidopsis thaliana	NP_850129.1	cell division protease ftsH-3 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002323508.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: your sequence is shorter than subject: 645 - 695

Fln protein: KNKLLEPGLVDHIVVSNKSVAKVYVRNSPNNSTQSESSDAEIHVRRTSSGGGSQHKYSFNIGSVESFEQKLEDAQEALGIDPHDYVPVTYVSEMVWYQELLRFAPTLLILGSLIYFGRRMQSGLGVGGPGGKGGRGLFNIGKANVTKLDKNSKDKVLFKDVAGCDEAKQEIMEFVHFLKNPKKYQELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSICGSDFMEMFVGVGPSRVRSLFAEARQSAPSIIFIDEIDAIGRARGRGGLAGANDERESTLNQTLAETHGFGTTSGVVVLAGTNRPDIIDKALLRPGRFDRQISIDKPDIIGREQIFQIYLKKLKLDQDPKYYSQRLAALTPGFAGADIANVCNEGALIAVRNEKTEINMSHFEAAIDRIIGGLEKKNKVISKEERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYLPNENLLMTREQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVALYGFSEKIGLLSFPQREDSYEMTKPYSNETAEIIDNEVREWVNKAYARTLELIEQHREGVEKMAKLLLEKEVLHQDDLVQVLGERPYKSKEPTNYDRFKQGFQIGDVGEDGTAQNDKEDNVSSEAETAVLT*

Protein Length: 646

Fln nts: TCAAAAATAAACTTCTGGAACCTGGGCTTGTGGATCATATTGTGGTTTCAAACAAATCTGTAGCTAAAGTTTATGTTCGAAATTCACCAAATAATTCTACCCAAAGTGAAAGCAGTGATGCAGAGATTCATGTCAGACGGACCTCCTCTGGGGGTGGCAGCCAACATAAGTATTCTTTTAATATTGGCAGTGTTGAATCCTTTGAGCAGAAGTTGGAAGATGCACAAGAAGCACTGGGTATTGATCCTCATGATTATGTTCCTGTAACATATGTTTCAGAAATGGTCTGGTACCAAGAGCTGTTGAGATTTGCACCAACATTATTGATTCTTGGGTCTCTTATTTACTTTGGGCGAAGAATGCAAAGTGGTTTAGGTGTAGGTGGACCTGGAGGCAAGGGTGGTCGTGGACTCTTTAACATTGGCAAAGCTAATGTGACGAAGCTAGATAAAAATTCAAAGGACAAGGTATTATTTAAGGATGTAGCTGGTTGTGATGAAGCAAAGCAAGAGATCATGGAGTTTGTGCATTTTCTTAAAAATCCTAAAAAGTACCAAGAGCTAGGAGCTAAAATTCCAAAAGGAGCCCTTTTAGTGGGCCCTCCTGGCACAGGGAAAACTCTCTTGGCAAAAGCTACAGCAGGGGAAGCAGGAGTCCCTTTTCTTTCAATTTGTGGCTCAGATTTCATGGAGATGTTTGTTGGTGTTGGGCCTTCTAGAGTTAGAAGTTTGTTTGCTGAAGCCAGGCAGTCTGCACCAAGTATTATCTTTATTGATGAGATTGATGCAATTGGTCGGGCAAGAGGTCGTGGAGGGTTAGCAGGAGCAAATGATGAAAGAGAAAGTACTCTCAACCAGACCCTAGCAGAAACGCATGGTTTTGGGACAACTTCAGGTGTAGTGGTGCTTGCAGGCACGAACAGACCTGACATCATAGACAAGGCCCTTCTCAGGCCCGGGCGATTTGATCGTCAAATTTCTATTGATAAGCCTGACATAATTGGTCGGGAACAAATCTTCCAAATTTATCTGAAGAAACTTAAGCTTGACCAAGATCCAAAATACTACTCTCAACGCCTTGCTGCACTGACTCCAGGATTTGCAGGAGCAGATATTGCAAATGTGTGCAATGAGGGTGCTCTTATTGCTGTGAGGAATGAGAAGACTGAGATCAATATGTCACACTTTGAGGCAGCTATTGATAGAATTATTGGTGGTTTGGAGAAGAAAAATAAGGTAATTAGTAAGGAGGAAAGGAGGACTGTAGCATATCATGAATCAGGTCATGCTGTAGTTGGATGGTTCTTGGAGCATGCAGAGCCACTTTTGAAAGTAACAATTGTTCCTCGCGGCACTGCAGCATTGGGCTTTGCTCAATATTTACCAAATGAGAATTTGCTGATGACAAGGGAGCAGCTATTTGACATGACATGCATGACACTTGGAGGTCGGGCTGCTGAACAGGTTTTGTTGGGAAAAATTTCAACTGGAGCTCAAAATGACTTGGAGAAGGTGACAAAGATGACATATGCACAAGTTGCATTATATGGTTTTAGTGAAAAAATTGGTCTTCTATCTTTTCCTCAAAGGGAAGATTCTTATGAAATGACTAAGCCTTACAGTAATGAAACAGCAGAAATTATTGATAATGAAGTACGTGAGTGGGTAAATAAAGCCTATGCAAGGACCTTAGAGTTAATTGAACAGCACAGGGAAGGAGTGGAAAAGATGGCTAAATTGCTTCTTGAAAAAGAGGTTTTGCATCAGGATGATTTAGTGCAAGTGCTTGGCGAGCGTCCATACAAGTCAAAAGAGCCAACTAATTATGATCGTTTCAAACAAGGGTTTCAAATTGGAGATGTTGGGGAGGATGGAACGGCACAAAATGATAAAGAGGATAATGTCTCATCAGAAGCTGAGACAGCAGTGCTTACTTAG___AAGGGCATCTGGAAACATTATTAAAGCTGAGAGTCATGCTTACTAAAATATCCTGATGATTATAACATCTGCTAAATTAGAGAGTGTAATAAACAAGGCTAAAAATGAGATATGATAAGAAGAAATTCAGGCAATCTCTTGTGACAGGATTTCAAGTGTAAAAATTGGACCCATCCTCTGTATGTTGCAGACTGTCTATTATTGAGTGGATGTTATATTGTTTTAGGGAAATATGGGCTGTCTCCAGGAAAATCCCAAATTGATTGCTTTTACTAATCTTCCTGAGGGACAGGAACAGGAAGATGCTGTATTATATGTTGGTTAAATGTCCTTAATCTTTTGCTAAGAACAAGGAACTTGAATCTTCATCTCACATCTTGTGAACTGTGGTTCAGCTTAGATTGTAAACTTTATGGAAACATTCTTCTTTTTGAGAAACCTGATCTTGTGCTGATGGAGTTTTTTTTTAAACAG

Fln Alignment:

Contig3964___LLILGSLIYFGRRMQSXXXXXXXXXXXXXXLFNIGKANVTKLDKNSKDKVLFKDVAGCDEAKQEIMEFVHFLKNPKKYQELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSICGSDFMEMFVGVGPSRVRSLFAEARQSAPSIIFIDEIDAIXXXXXXXXXXXXNDERESTLNQTLAETHGFGTTSGVVVLAGTNRPDIIDKALLRPGRFDRQISIDKPDIIGREQIFQIYLKKLKLDQDPKYYSQRLAALTPGFAGADIANVCNEGALIAVRNEKTEINMSHFEAAIDRIIGGLEKKNKVISKEERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYLPNEN-LLMTREQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQVALYGFSEKIGLLSFPQREDSYEM------TKPYSNETAEIIDNEVREWVNKAYARTLELIEQHREGVEKMAKLLLEKEVLHQDDLVQVLGE
C0PQ75______________LILVGGLFLLSRR--SSGGMGGPGGPGFPLSFGQSKA---KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAV-GRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSL--GVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEIDDSIDRIVAGMEGTIMTDGK-NKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQAR-GLTWFIPGDDPTLISRQQLFARIVGGLGGRAAEQVIFGESEVTTGAASDLQMVTSMAKQMVTVFGMSE-IGPWSLMDAAQSGDVIMRMMARNSMSEKLAEDIDEAVKSLSDQAYEVALGHIRNNRAAIDKIVEVLLEKETMTGDEFRALLSE

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1603	25			75	0.996473
1634	75	25			0.996473
1681		50		50	1.0
1720	85			14	0.993533
1747		14		85	0.993533
1755	87			12	0.992554
1756	87		12		0.992554
1758	87		12		0.992554
1936			33	66	1.0
2110	10		90		0.90298
2313		14		85	0.993533
2375	25		75		0.996473
2376	75		25		0.996473
2377			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain