SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3962

Length: 2000 nt

UniGene Fasta

>sp_v3.0_unigene3962
GGTGACAATTTTTTTTTTAATCTATTTACAATTAAGGACTGAGAGGTGCAGTGTCTCATGTGAGGGACTTCCATTACTTTCACCGGCAATAATTGGGTAAGGAACAAAACGTGAACATTTGAAGCGGCTGATTGACAGATCCTATACATTCTCTCTCGTGGGTCACTCCGCTTTCTTGCAGGTTTGTGCTTTCATGTCGGATGCAGCATGGATTATTCATTTTCAGGTCCAGAGATTGTGACAGGGATTGGAGCATAGACATCTATTTGTTACGGAGGGTGGTTGATACATATAAATATAGACTAAGACACCTGCTGATCTATTCATTAGTCGGTATGGTGTGGGGAGGGCGCCACACCAGAGGAGGGGGTGCTTCTTCAAAATGGCTCATTCTTCTCTGCATAGCGAGCTTCTGCTTGGGAATGCTCGTTACAAACAGGACATGGATTGTTCCAGATTCAAGAGAAGAAACTGAGGCTTATGCTGAGAAAGAACATAAAGAGCGGCATCTTCAACTTGTGAATGACTGTGAGGAAAAAAAATAAGAAAACCAATGTGCAGGCAAAGGACATCCTTAGTCAAGTATCCAAGACTCATGATGCAATCAAGACATTAGATAAAACAATCTCAACACTGGAAATGGAGCTGGCAGCGGCTAGAGCTGCACAAGCATCTAGTCTGAATGGTTCTCCAGTATTGATCAAGCCAGTTGGCGAGAAAACAGAGGAACGACCAAAAGCTTTTATTGTCATTGGAATCAATACTGCATTCAGTAGCCGTAAACGACGGTACTCACTTCGTGAAACATGGATGCCCCAAGGAGAAAAAATTCACCAGATTGAAAAAGAAAAAGGAATTGTAATAAGATTTGTTATTGGTCACAGTGCAACACCTGGGGGTATTTTAGACCGTGCTATTGATGCTGAGGATGCTCAACATCGAGACTTTATGAGGCTGAACCACATTGAAGGTTATCATGAGTTGTCTACGAAGACACTAATATACTTTGCAACAGCAGTAGCAAAGTGGGATTCAGATTTCTATGTCAAAGTTGATGATGATATACATGTTAATTTAGGTATTCTTGGTACTACTCTAGCACGCCATCGTGCCAAACCACGTGTTTACATAGGCTGTATGAAGTCAGGGCCAGTTCTTGCTCAGAAAGGTGCAAAATACCGTGAGCCTGAATATTGGAAATTTGGTGAGGAGGGAAATAAATATTTCAGACATGCAACTGGACAATTATATGCGATCTCCAAAGATCTGGCCACTTACATTTCCATAAATCAGCAAATCTTGCACAGATATGCCAATGAAGATGTCTCTCTAGGATCCTGGTTTATTGGATTAGATGTGGAGCATATTGATGATCGGAGCCTTTGTTGTGGCACTCCTCCAGATTGTGAATGGAAGGCTCAGGCTGGAAATCCCTGCGTAGCATCCTTTGATTGGAGTTGCAGTGGCATCTGCAAATCTATTGAAAGGATGAAAGATGTGCATCAACGTTGCGGTGAGGGGGATGGGGCAGTCTGGAGTGCAGTTTTTTAATATGCCCCAGACACTTTTTAGCATTGTTGCTGTAATTTATTTATTATTTTAATTTTATTCATGAATGGTTTTGTAATTTAGGAATTCAATGTGGACTGATTAAGGCATAATGTCTAGTGCGCGGTATTTGTTATAATCAGCTTCTCTCAAATGTAGCTCTTTGGAGAATGCTTTGTAATGCTTCCCCTATTTTTTTCACCACTTCAGAAGGTCTGGTTACTTGTTTCGTTGCCTATCCTTTCTGTATACAGCTGAACTATGTACACGAATTGTGATGCCATTCTAGTTCACATTTATTCCAGAGAGATGCATCTTGATGCATTTAAGTATTTTGAGGAAAATGTGTGTTGTGATCCTATGCAGGTGTGTCTCTTTAGATCTTGGTGGTGAATAAATTGAATGAGGTGCAGGTTTCACGACCTTAAATTGCTGTAAAATTGGAAGAGCTG

Ace file of the UniGene sp_v3.0_unigene3962

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pfam01762, Galactosyl_T, Galactosyltransferase	-	-	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Sma3	Chromosome chr2 scaffold_105, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00000488001;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	galactosyltransferase activity	GO:0008378	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 31	IPR002659	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32930.1	Galactosyltransferase family protein chr1:11931980-11934399 REVERSE LENGTH=399	73%
RefSeq	Arabidopsis thaliana	NP_174569.1	putative beta-1,3-galactosyltransferase 6 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002317052.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE09

Fln msg:

Fln protein: MTVRKKNKKTNVQAKDILSQVSKTHDAIKTLDKTISTLEMELAAARAAQASSLNGSPVLIKPVGEKTEERPKAFIVIGINTAFSSRKRRYSLRETWMPQGEKIHQIEKEKGIVIRFVIGHSATPGGILDRAIDAEDAQHRDFMRLNHIEGYHELSTKTLIYFATAVAKWDSDFYVKVDDDIHVNLGILGTTLARHRAKPRVYIGCMKSGPVLAQKGAKYREPEYWKFGEEGNKYFRHATGQLYAISKDLATYISINQQILHRYANEDVSLGSWFIGLDVEHIDDRSLCCGTPPDCEWKAQAGNPCVASFDWSCSGICKSIERMKDVHQRCGEGDGAVWSAVF*

Protein Length: 344

Fln nts: GGTGACAATTTTTTTTTTAATCTATTTACAATTAAGGACTGAGAGGTGCAGTGTCTCATGTGAGGGACTTCCATTACTTTCACCGGCAATAATTGGGTAAGGAACAAAACGTGAACATTTGAAGCGGCTGATTGACAGATCCTATACATTCTCTCTCGTGGGTCACTCCGCTTTCTTGCAGGTTTGTGCTTTCATGTCGGATGCAGCATGGATTATTCATTTTCAGGTCCAGAGATTGTGACAGGGATTGGAGCATAGACATCTATTTGTTACGGAGGGTGGTTGATACATATAAATATAGACTAAGACACCTGCTGATCTATTCATTAGTCGGTATGGTGTGGGGAGGGCGCCACACCAGAGGAGGGGGTGCTTCTTCAAAATGGCTCATTCTTCTCTGCATAGCGAGCTTCTGCTTGGGAATGCTCGTTACAAACAGGACATGGATTGTTCCAGATTCAAGAGAAGAAACTGAGGCTTATGCTGAGAAAGAACATAAAGAGCGGCATCTTCAACTTGTGA_-_ATGACTGTGAGGAAAAAAAATAAGAAAACCAATGTGCAGGCAAAGGACATCCTTAGTCAAGTATCCAAGACTCATGATGCAATCAAGACATTAGATAAAACAATCTCAACACTGGAAATGGAGCTGGCAGCGGCTAGAGCTGCACAAGCATCTAGTCTGAATGGTTCTCCAGTATTGATCAAGCCAGTTGGCGAGAAAACAGAGGAACGACCAAAAGCTTTTATTGTCATTGGAATCAATACTGCATTCAGTAGCCGTAAACGACGGTACTCACTTCGTGAAACATGGATGCCCCAAGGAGAAAAAATTCACCAGATTGAAAAAGAAAAAGGAATTGTAATAAGATTTGTTATTGGTCACAGTGCAACACCTGGGGGTATTTTAGACCGTGCTATTGATGCTGAGGATGCTCAACATCGAGACTTTATGAGGCTGAACCACATTGAAGGTTATCATGAGTTGTCTACGAAGACACTAATATACTTTGCAACAGCAGTAGCAAAGTGGGATTCAGATTTCTATGTCAAAGTTGATGATGATATACATGTTAATTTAGGTATTCTTGGTACTACTCTAGCACGCCATCGTGCCAAACCACGTGTTTACATAGGCTGTATGAAGTCAGGGCCAGTTCTTGCTCAGAAAGGTGCAAAATACCGTGAGCCTGAATATTGGAAATTTGGTGAGGAGGGAAATAAATATTTCAGACATGCAACTGGACAATTATATGCGATCTCCAAAGATCTGGCCACTTACATTTCCATAAATCAGCAAATCTTGCACAGATATGCCAATGAAGATGTCTCTCTAGGATCCTGGTTTATTGGATTAGATGTGGAGCATATTGATGATCGGAGCCTTTGTTGTGGCACTCCTCCAGATTGTGAATGGAAGGCTCAGGCTGGAAATCCCTGCGTAGCATCCTTTGATTGGAGTTGCAGTGGCATCTGCAAATCTATTGAAAGGATGAAAGATGTGCATCAACGTTGCGGTGAGGGGGATGGGGCAGTCTGGAGTGCAGTTTTTTAA___TATGCCCCAGACACTTTTTAGCATTGTTGCTGTAATTTATTTATTATTTTAATTTTATTCATGAATGGTTTTGTAATTTAGGAATTCAATGTGGACTGATTAAGGCATAATGTCTAGTGCGCGGTATTTGTTATAATCAGCTTCTCTCAAATGTAGCTCTTTGGAGAATGCTTTGTAATGCTTCCCCTATTTTTTTCACCACTTCAGAAGGTCTGGTTACTTGTTTCGTTGCCTATCCTTTCTGTATACAGCTGAACTATGTACACGAATTGTGATGCCATTCTAGTTCACATTTATTCCAGAGAGATGCATCTTGATGCATTTAAGTATTTTGAGGAAAATGTGTGTTGTGATCCTATGCAGGTGTGTCTCTTTAGATCTTGGTGGTGAATAAATTGAATGAGGTGCAGGTTTCACGACCTTAAATTGCTGTAAAATTGGAAGAGCTG

Fln Alignment:

Contig3962___TLDKTISTLEMELXXXXXXXXSSLNGSPVLIKPVGEKTEERPKAFIVIGINTAFSSRKRRYSLRETWMPQGEKIHQIEKEKGIVIRFVIGHSATPGGILDRAIDAEDAQHRDFMRLNHIEGYHELSTKTLIYFATAVAKWDSDFYVKVDDDIHVNLGILGTTLARHRAKPRVYIGCMKSGPVLAQKGAKYREPEYWKFGEEGNKYFRHATGQLYAISKDLATYISINQQILHRYANEDVSLGSWFIGLDVEHIDDRSLCCGTPPDCEWKAQAGNPCVASFDWSCSGICKSIERMKDVHQRCGEGDGAVWSAV
D5AE09______________SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGRGSEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGPKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDAEDAQHNDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRYRSKPRIYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNRYFRHATGQIYAISRDLATYISINSPILHRYANEDVSLGAWFIGLDVEHIDERSMCCGTPPDCEWKAQAGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWSTL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
533	25		75		0.996473
546			57	28	1.0
952	87			12	0.992554
1214	18		81		0.999994
1215	81	18			0.999994
1217	81			18	0.999994
1228	85		14		0.993533
1441	75	25			0.996473
1447	50		50		1.0
1474	50	50			1.0
1485		75	25		0.996473
1662	75	25			0.996473
1664			75	25	0.996473
1666	75		25		0.996473
1668	75		25		0.996473
1670		25		75	0.996473
1671		25	75		0.996473
1675	75		25		0.996473
1680	25		75		0.996473
1682			75	25	0.996473
1683		25	75		0.996473
1691		14		85	0.993533
1692	85		14		0.993533
1694	85	14			0.993533
1695	85		14		0.993533
1697		85	14		0.993533
1699		14	85		0.993533
1703		85	14		0.993533
1704			14	85	0.993533
1707		85	14		0.993533
1708	85			14	0.993533
1709	85	14			0.993533
1711		14		85	0.993533
1712			85	14	0.993533
1713		14		85	0.993533
1882		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain