SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3948

Length: 2211 nt

UniGene Fasta

>sp_v3.0_unigene3948
TGGGCTTGATCACCTTCGGCACGAACGTACATGTCCACGAGCTGGGCTTCACTCACATTCCAAAGTCTTATGTCTGGAAAGGTTCCAAAGAAGTTACCAGCAAGGACCAAATTCTGGATCACCTCAACTTCTTTATACACAATAAAAGCACGATGAACGCAACTCCCTCTGCAGGAGTAATTGCCGGGGAGAAAGATGGACTCTCTGCCAAAAGCATTGGCCGCTTCTTGTTGCCTGCTTCGAATTGCGAATTCACCTTTAATTTGATTTTGGAAGAGTTGCAAAAGGACCCGTGGCCGGCGCAGGCGGATCAAAGAGCGGCCCGTTGTACTGGCACTGCTTTGAGCGTGGCGGCTGGATTATTAGGCGCTTGTGTGCCAGGAAGCGCTGCTCGAATCATGGCTTTCATTGGTGGCCCTTGCACTGAAGGATCCGGTACAATTGTGTCTAAATATCAGTCAGAACCAATACGCTCTCACAAGGACCTCAACAAAGATGCTGCTCCTTATTATCATAAAGCAGTCAAATTTTATGAAGGACTTGCGAAGCAACTTGTCAATCAGGGTCATGTTCTAGATCTTTTTGCATGTGCTCTTGATCAGGTAGGAGTGGCAGAGATTAAAGTAGCAGTAGAAAGGACAGGTGGACTGGTTGTGCTCTGCGAAAGTTTTGGGCATTCTGTTTTCAAGGATTCTTTTAAGCGTGTCTTTGAAGTTAGAGATTATGACCTTGGTTTATCATTCAATGGTATTTTTGAGGTGAACTGCTCGAAGGAGGTGAAGATACAGGGTATCATTGGGCCCTGTGCTTCTCTAGACAAGAATGGGGCCTTGTGCTCAGATACAGTTGTTGGCCAAGGAAAAACAACTGCTTGGAAAATGTGTGGCCTTGACAAAGCCACATCTTTATGCATATTTTTTGATGTTGTCCCAAAGGAGGTGTCCGGCACAGGAGGACAATCTGCTAGTAATCAGTTCTTTTTTCAGTTTCTAACGTACTATCAGCATAGTAGTGGACAAATGCACCTCAGGTCAACAACAATATCCAGACGATGGGTTGATGGTCCTGGAAGTATAGAGGAGCTTGCTGCTGGATTTGATCAAGAAGCAGCGGCTGTGGTCATGGCACGATTGGCTTCATTAAAAATGGAGACAGAGTGCTTGTTGGATACTTGCAGGATGAGTTTGATGCAATCCGTTGGTTGGACAGATCATTGATCCACTTGTCCTCCAGGTTTGGAGATTATCGGAAGGATGACACTTCTTCCTTTAGTTTTTCACCGAGATTTGCAATATTTCCTCAGTTCATCTTCCACTTACGCCGTTCTCAGTTTGTTCAGGTTTTCAATAACAGTCCAGATGAGACTGCCTATTTTCGGATGATCTTGAACAGAGAGAATGTCAGCAACTCAGTTGTGATGATTCAACCATCATTGATATCTTACTGTTTCAATGCACCTCCAGAGCCAGTTCTCCTTGATGTTGCTTCCATTGCTGCTGACCGAATTCTTCTCTTAGATGCTTATTTCACTGTAGTTATTTTTCATGGAACGACTATTGCACAATGGCGAAATGCTGGCTACCAGCACCAACCAGAACATCAGGCATTTTCTCAATTATTGCAAGCCCCTAGAGATTACGCTGATTCAATACTTAATGAGCGTTTTCCCGTGCCACGCTTAGTTGTCTGTGACCAACATCGCTCACAGGCACGGTTTTTGCTGGCAAAGCTGAATCCTTCTGCAACTTACAATTCGGACGTGGGGCCTCCACCGGGAGGAGATATTATTTTTACGGATGATGTGAGCTTTCAGACCTTTATGGAGCATCTTCAAAGATTGGCTGTTCAGTCATAGTCACAACCAGTTCATTTCATCAGCATCATATAAATTTTCTAATTCGTTGGAGATCTCTGTAATGTACGGGTGTTCGGGCTTGTACTTCAACATATTAAAGATTAGGTTTGGCCTTCTATTTTTCACTCCTGTACTACTGCATTGGCGTTATTCAAATATGTCTGTCTCCGAATCTTAGGGTAATACTAATTAATTGGTGTCAGGCAAGCCTTTTATATTAACTGAACTTTAGGTTGGGTATAGTACTATGGAACACAATTTTGGCCATTGTGTCATCGGTTTGTGATAATCATTTAATTGTTTCAAGCAGCAACTTGCGTTTTTTATTTTGGTACTTTGCAGTAGTCATCTTAATC

Ace file of the UniGene sp_v3.0_unigene3948

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein transport protein SEC23 [Arabidopsis thaliana] dbj\|BAB02785.1\| protein transport protein Sec23 [Arabidopsis thaliana] gb\|AAO22730.1\| putative transport protein [Arabidopsis thaliana] gb\|AAO50656.1\| putative transport protein [Arabidopsis thaliana]	-	-	0.0	62%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	72%
Sma3	Protein transport protein sec23, putative	-	-	5.891e-11	-

Source	Gene names
Sma3	AT4g14160; At1g05520; At2g21630; At3g23660; At4g14160; At5g43670; CHLREDRAFT_133099; GSVIVT00000803001; GSVIVT00003489001; GSVIVT00020123001; LOC_Os03g53140; LOC_Os11g24560; MICPUCDRAFT_33721; MICPUN_107228; MICPUN_61002; OJ1365_D05.6; OSTLU_16541; OSTLU_

Source	GOs	Term	Type	Identity
Sma3	COPII vesicle coat	GO:0030127	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23660.2	Sec23/Sec24 protein transport family protein chr3:8513666-8517729 REVERSE LENGTH=791	63%
RefSeq	Arabidopsis thaliana	NP_189008.1	protein transport protein SEC23 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002303018.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: I1JMB0

Fln msg: Separated hits, possible frame ERROR between 1178 and 1181, your sequence is shorter than subject: 618 - 767

Fln protein: GLITFGTNVHVHELGFTHIPKSYVWKGSKEVTSKDQILDHLNFFIHNKSTMNATPSAGVIAGEKDGLSAKSIGRFLLPASNCEFTFNLILEELQKDPWPAQADQRAARCTGTALSVAAGLLGACVPGSAARIMAFIGGPCTEGSGTIVSKYQSEPIRSHKDLNKDAAPYYHKAVKFYEGLAKQLVNQGHVLDLFACALDQVGVAEIKVAVERTGGLVVLCESFGHSVFKDSFKRVFEVRDYDLGLSFNGIFEVNCSKEVKIQGIIGPCASLDKNGALCSDTVVGQGKTTAWKMCGLDKATSLCIFFDVVPKEVSGTGGQSASNQFFFQFLTYYQHSSGQMHLRSTTISRRWVDGPGSIEELAAGFDQEAAAVVMARLASLKMETECLLDTCxxEFDAIRWLDRSLIHLSSRFGDYRKDDTSSFSFSPRFAIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVSNSVVMIQPSLISYCFNAPPEPVLLDVASIAADRILLLDAYFTVVIFHGTTIAQWRNAGYQHQPEHQAFSQLLQAPRDYADSILNERFPVPRLVVCDQHRSQARFLLAKLNPSATYNSDVGPPPGGDIIFTDDVSFQTFMEHLQRLAVQS*

Protein Length: 619

Fln nts: TGGGCTTGATCACCTTCGGCACGAACGTACATGTCCACGAGCTGGGCTTCACTCACATTCCAAAGTCTTATGTCTGGAAAGGTTCCAAAGAAGTTACCAGCAAGGACCAAATTCTGGATCACCTCAACTTCTTTATACACAATAAAAGCACGATGAACGCAACTCCCTCTGCAGGAGTAATTGCCGGGGAGAAAGATGGACTCTCTGCCAAAAGCATTGGCCGCTTCTTGTTGCCTGCTTCGAATTGCGAATTCACCTTTAATTTGATTTTGGAAGAGTTGCAAAAGGACCCGTGGCCGGCGCAGGCGGATCAAAGAGCGGCCCGTTGTACTGGCACTGCTTTGAGCGTGGCGGCTGGATTATTAGGCGCTTGTGTGCCAGGAAGCGCTGCTCGAATCATGGCTTTCATTGGTGGCCCTTGCACTGAAGGATCCGGTACAATTGTGTCTAAATATCAGTCAGAACCAATACGCTCTCACAAGGACCTCAACAAAGATGCTGCTCCTTATTATCATAAAGCAGTCAAATTTTATGAAGGACTTGCGAAGCAACTTGTCAATCAGGGTCATGTTCTAGATCTTTTTGCATGTGCTCTTGATCAGGTAGGAGTGGCAGAGATTAAAGTAGCAGTAGAAAGGACAGGTGGACTGGTTGTGCTCTGCGAAAGTTTTGGGCATTCTGTTTTCAAGGATTCTTTTAAGCGTGTCTTTGAAGTTAGAGATTATGACCTTGGTTTATCATTCAATGGTATTTTTGAGGTGAACTGCTCGAAGGAGGTGAAGATACAGGGTATCATTGGGCCCTGTGCTTCTCTAGACAAGAATGGGGCCTTGTGCTCAGATACAGTTGTTGGCCAAGGAAAAACAACTGCTTGGAAAATGTGTGGCCTTGACAAAGCCACATCTTTATGCATATTTTTTGATGTTGTCCCAAAGGAGGTGTCCGGCACAGGAGGACAATCTGCTAGTAATCAGTTCTTTTTTCAGTTTCTAACGTACTATCAGCATAGTAGTGGACAAATGCACCTCAGGTCAACAACAATATCCAGACGATGGGTTGATGGTCCTGGAAGTATAGAGGAGCTTGCTGCTGGATTTGATCAAGAAGCAGCGGCTGTGGTCATGGCACGATTGGCTTCATTAAAAATGGAGACAGAGTGCTTGTTGGATACTTGCAGxxxTGAGTTTGATGCAATCCGTTGGTTGGACAGATCATTGATCCACTTGTCCTCCAGGTTTGGAGATTATCGGAAGGATGACACTTCTTCCTTTAGTTTTTCACCGAGATTTGCAATATTTCCTCAGTTCATCTTCCACTTACGCCGTTCTCAGTTTGTTCAGGTTTTCAATAACAGTCCAGATGAGACTGCCTATTTTCGGATGATCTTGAACAGAGAGAATGTCAGCAACTCAGTTGTGATGATTCAACCATCATTGATATCTTACTGTTTCAATGCACCTCCAGAGCCAGTTCTCCTTGATGTTGCTTCCATTGCTGCTGACCGAATTCTTCTCTTAGATGCTTATTTCACTGTAGTTATTTTTCATGGAACGACTATTGCACAATGGCGAAATGCTGGCTACCAGCACCAACCAGAACATCAGGCATTTTCTCAATTATTGCAAGCCCCTAGAGATTACGCTGATTCAATACTTAATGAGCGTTTTCCCGTGCCACGCTTAGTTGTCTGTGACCAACATCGCTCACAGGCACGGTTTTTGCTGGCAAAGCTGAATCCTTCTGCAACTTACAATTCGGACGTGGGGCCTCCACCGGGAGGAGATATTATTTTTACGGATGATGTGAGCTTTCAGACCTTTATGGAGCATCTTCAAAGATTGGCTGTTCAGTCATAGTCACAACCAGTTCATTTCATCAGCATCATATAAATTTTCTAATTCGTTGGAGATCTCTGTAATGTACGGGTGTTCGGGCTTGTACTTCAACATATTAAAGATTAGGTTTGGCCTTCTATTTTTCACTCCTGTACTACTGCATTGGCGTTATTCAAATATGTCTGTCTCCGAATCTTAGGGTAATACTAATTAATTGGTGTCAGGCAAGCCTTTTATATTAACTGAACTTTAGGTTGGGTATAGTACTATGGAACACAATTTTGGCCATTGTGTCATCGGTTTGTGATAATCATTTAATTGTTTCAAGCAGCAACTTGCGTTTTTTATTTTGGTACTTTGCAGTAGTCATCTTAATC

Fln Alignment:

Contig3948___GLITFGTNVHVHELGFTHIPKSYVWKGSKEVTSKDQILDHLNFFIHNKSTMNATPSAGVIAGEKDGLSAKSIGRFLLPASNCEFTFNLILEELQKDPWPAQADQRAARCTGTALSVAAGLLGACVPGSAARIMAFIGGPCTEGSGTIVSKYQSEPIRSHKDLNKDAAPYYHKAVKFYEGLAKQLVNQGHVLDLFACALDQVGVAEIKVAVERTGGLVVLCESFGHSVFKDSFKRVFEVRDYDLGLSFNGIFEVNCSKEVKIQGIIGPCASLDKNGALCSDTVVGQGKTTAWKMCGLDKATSLCIFFDVVPKEVSGTGGQSASNQFFFQFLTYYQHSSGQMHLRSTTISRRWVDGPGSIEELAAGFDQEAAAVVMARLASLKMETECLLDTCRxEFDAIRWLDRSLIHLSSRFGDYRKDDTSSFSFSPRFAIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVSNSVVMIQPSLISYCFNAPPEPVLLDVASIAADRILLLDAYFTVVIFHGTTIAQWRNAGYQHQPEHQAFSQLLQAPRDYADSILNERFPVPRLVVCDQHRSQARFLLAKLNPSATYNSDVGPPPGGDIIFTDDVSFQTFMEHLQRLAVQ
I1JMB0______________GLITFGTFVHVHELGFGAVPKTYVFKGSKDLT-KDQLLEQMSFF-----AKKPRPAVGVVAGARDGLSPESISRFLVPASECEFTINSVLEELQKDPWAVPADQRAARCTSTALSIAAGLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRIFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVTIGQGGTSAWKMCGLDKSTSLCLFFDVVRKETPDATIQSTSNQFYFQFLTYYQNNGGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRxEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHAGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDADLIIKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTE-SYNPGGDIIFTDDVSFDVFLDHLQRLVVQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
963	14		85		0.993533
964	16	83			0.994512
965			16	83	0.994512
967		16	83		0.994512
972	16	83			0.994512
974	16		83		0.994512
2166	13	86			0.999973
2167	60	40			1.0
2173		33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain