SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3941

Length: 1231 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3941

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit emb\|CAA63223.1\| TOM20 [Solanum tuberosum]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane translocase complex	GO:0005742	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein import into mitochondrial outer membrane	GO:0045040	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant specific mitochondrial import receptor subunit TOM20	IPR010547	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27080.1	TOM20-3 translocase of outer membrane 20 kDa subunit 3 chr3:9985212-9986560 REVERSE LENGTH=202	52%
RefSeq	Arabidopsis thaliana	NP_189344.1	mitochondrial import receptor subunit TOM20-3 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002299299.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRT7

Fln msg: Separated hits, possible frame ERROR between 795 and 819, your sequence is longer than subject: 256 - 205

Fln protein: MEEMAIPQSDFDRLLFFEGARKAAENTYAVNPEDADNLTRWGGALLELSQFQQGPDCVKMVKDAVSKLEEALKIGPNKHDTLWCLGNAHTSHAFLIPEHEVAKIYFKMASKYFQQAVEQDPTNELYRKSLELTEKAPELHLEVHKQILNPQSVAAGSSTVSNLKGSRKKKSSDLKYDIMGWIVLAVGIVAWVGMAKSHVPPPPMxxxxxxxxxKGSRKKKSSDLKYDIMGWIVLAVGIAAWVGMAKSHVPPPPML*

Protein Length: 257

Fln nts: ACTGCTTAGCAGTGGTATCAACGCAGAGTACGCGGGGGGGGGAACCAGTTTTAAATGGGGAACACATAGATAACAAAAAAACAATTGCTTGCATCACCACATTGAAGGGGAGAGTTTAATCTTCCAGGGCTTTACAGGCTGCCTCACGGTTTCCCCCTCTGATCTACTCTATTCTGTGTG_-_ATGGAAGAAATGGCGATTCCTCAGAGTGATTTCGATCGCCTTCTCTTCTTTGAGGGTGCAAGGAAGGCAGCGGAGAATACTTACGCTGTAAACCCTGAAGATGCAGATAACCTCACAAGATGGGGAGGTGCTCTATTGGAGCTATCTCAATTTCAACAAGGTCCAGATTGTGTGAAGATGGTCAAAGATGCTGTGTCAAAACTCGAAGAGGCATTGAAAATTGGCCCAAATAAACATGATACTTTGTGGTGCTTGGGAAATGCACATACATCGCATGCATTTCTTATCCCAGAACATGAAGTCGCAAAAATTTACTTCAAGATGGCTTCTAAATATTTTCAGCAAGCAGTAGAGCAGGATCCGACAAATGAATTGTATCGGAAGTCTTTAGAATTGACAGAAAAGGCTCCTGAGTTGCATTTGGAAGTCCATAAACAAATCTTGAACCCACAGTCTGTTGCTGCTGGTTCCTCAACTGTATCAAATTTGAAGGGCTCAAGGAAGAAGAAAAGCAGTGACTTAAAGTACGACATAATGGGTTGGATTGTACTTGCTGTTGGCATAGTAGCTTGGGTGGGAATGGCAAAATCTCATGTGCCTCCACCACCTATGCTxxxxxxxxxxxxxxxxxxxxxxxxCAAGGGCTCGAGGAAGAAGAAAAGCAGTGACTTAAAGTACGACATAATGGGTTGGATTGTACTTGCTGTTGGCATAGCAGCTTGGGTTGGAATGGCAAAATCTCATGTGCCTCCTCCACCTATGCTATAA___AATCCTTTTATTGTCAAAACAAGTTTTGCATACATGTTAGGATCCAGTTCTTGTTTCTGTAATGGACCATGCTAGCATGGCTCAGAAGACCCTATCATTTTAAATGCAAATCACTCAGTTAACTCTTTAATAATATTACTCCTGTGATTTTAGAGTATTCTGATTTTGTCACTTTCAGAACATGTGTATAATTATTTGCAGTTAAAGATGACATCATTTGTTGTTTCTATCCATTTTTCTATCAATCATAGTAAAAGTGAAACAGTATGGTTCATTGACTTAGT

Fln Alignment:

Contig3941___MEEMAIPQSDFDRLLFFEGARKAAENTYAVNPEDADNLTRWGGALLELSQFQQGPDCVKMVKDAVSKLEEALKIGPNKHDTLWCLGNAHTSHAFLIPEHEVAKIYFKMASKYFQQAVEQDPTNELYRKSLELTEKAPELHLEVHKQILNPQSVAAGSSTVSNLKGSRKKKSSDLKYDIMGWIVLAVGIVAWVGMAKSHVPPPPMLxxxxxxxxKGSRKKKSSDLKYDIMGWIVLAVGIAAWVGMAKSHVPPPPML
A9NRT7______________MDEMTIPQSDFDRLLFFEAARKTAENTYAVNPEDADNLTRWGGALLELSQFQQGSDCVKMVKDAVSKLEEALKVSPNKHDTLWCLGNAHTSHAFLIPEHEVAKIYFRMASQYFQQAVEQDPTNELYQKSLELTEKAPELHLEVHKQIFNPQSVAAGSSTVSNLKGSKKKKNSDLKYDIMGWIVLAVGIVAWVGMAKSHVPPPPMLxxxxxxxxKGSKKKKNSDLKYDIMGWIVLAVGIVAWVGMAKSHVPPPPML

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
285	90		10		0.90298
575			8	92	0.999718
678	95		4		0.995881
746		10		89	1.0
756			86	13	1.0
783	85			14	1.0
822	20		80		0.999996
823			10	90	0.90298
824		10		90	0.90298
825		10		90	0.90298
826		20	80		0.999996
827		64	35		1.0
829			35	64	1.0
830	64		35		1.0
831	35	64			1.0
834	35			64	1.0
835	35			64	1.0
836	64		35		1.0
837	35		64		1.0
838	35		64		1.0
840	35			64	1.0
841		64	35		1.0
852			35	64	1.0
853	35			64	1.0
858	35		64		1.0
862		64		35	1.0
865		64	35		1.0
867		40		60	1.0
868	40		60		1.0
869		60		40	1.0
870	40			60	1.0
1182		14		85	0.993533
1187		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain