SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3932

Length: 1621 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3932

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to adenosine monophosphate binding protein 1 AMPBP1 n=1 Tax=Vitis vinifera RepID=UPI0001985120	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	AMP dependent ligase, putative	-	-	1.157e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	o-succinylbenzoate--CoA ligase.	EC:6.2.1.26	-	1.326e-31	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.326e-31	%
Sma3	Metabolic pathways	01100	1.326e-31	%
Sma3	Biosynthesis of secondary metabolites	01110	1.326e-31	%

Source	Gene names
Sma3	ACLL10; ACLL3; ACLL4; ACLL5; ACLL6; ACLL7; ACLL8; ACLL9; AMPBP1; AMPBP10; AMPBP2; AMPBP4; AMPBP5; AMPBP6; AMPBP7; AMPBP8; AMPBP9; At1g20560; At1g21530; At1g21540; At1g65880; At1g65890; At1g66120; At1g68270; At1g75960; At1g76290; At1g77240; At2g17650; At3g

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	acetate-CoA ligase activity	GO:0003987	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	benzoate-CoA ligase activity	GO:0018858	Molecular Function	-
Sma3	acetate metabolic process	GO:0006083	Biological Process	-
Sma3	glyoxylate cycle	GO:0006097	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	glucosinolate biosynthetic process	GO:0019761	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20560.1	AAE1 acyl activating enzyme 1 chr1:7119927-7121730 REVERSE LENGTH=556	58%
RefSeq	Arabidopsis thaliana	NP_564116.1	acyl activating enzyme 1 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002307787.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM6

Fln msg: your sequence is shorter than subject: 487 - 569

Fln protein: PNVPATYEMHFGVPMAGAVLSTLNIRHDADTMSFILRHSEAKVVFVDYQFLKVTKAAVRILSQVKKELPLMIVIHELDKYRVSLNDDHEDVLEYEKLLASGDPNFETRWPEDEWDAITLNYTSGTTSNPKGVVYSHRGAFINTISTILMWEMKFRPVYLWTVPMFHCNGWGFPWGMAAQGGTSICLRSVKAKDIFDAIEEHKVTHLGAAPTVLSIIANAPPHERRPLPHTVYVMTGGSPPPSRLLSRMEELGFHITHIYGLTETYGPITSCVWKPEWAKLPSEDQFKLKTRQGVPHLGVSKQDVKNPSTMESVLHDGTTIGEVMIKGSIVMNGYFKNAEATAKAFENGWFHTGDLGVIHSDGYLELKDRSKDIIISGGENICSIEVETVIYAHPHVLEAAVVARPDDFWGETPCAFVELKEDFVEEEVTPESMINFCRHRLPHYMAPRTVIFGDLPKTSTGKIQKYLLRERAKTLGTIFPRDYKKE*

Protein Length: 488

Fln nts: CTCCAAATGTCCCAGCAACCTATGAAATGCATTTCGGAGTTCCAATGGCAGGGGCAGTGCTCAGCACTCTAAATATTAGACATGATGCAGATACAATGTCTTTTATTTTGAGGCATTCAGAAGCTAAGGTGGTCTTTGTGGATTACCAATTCTTGAAAGTTACAAAAGCGGCAGTAAGGATTCTTTCACAGGTGAAAAAGGAATTACCATTAATGATTGTGATTCATGAATTGGACAAGTATAGAGTATCTTTGAATGATGATCATGAAGATGTTCTGGAGTATGAAAAGCTTTTGGCAAGTGGAGATCCTAATTTTGAGACTCGCTGGCCTGAAGATGAATGGGATGCTATTACATTAAACTATACATCAGGCACCACGTCTAATCCTAAAGGTGTTGTGTACAGCCACAGAGGTGCCTTTATCAATACAATCAGTACCATTTTAATGTGGGAAATGAAGTTTAGGCCTGTTTACCTTTGGACTGTACCCATGTTTCACTGTAATGGTTGGGGTTTTCCATGGGGTATGGCAGCACAAGGTGGGACCAGCATTTGTCTCAGAAGTGTAAAAGCAAAAGATATATTTGACGCAATTGAGGAACACAAAGTCACCCACTTAGGCGCAGCACCAACTGTATTAAGTATCATTGCAAATGCACCACCTCATGAAAGAAGACCACTTCCTCACACTGTCTATGTTATGACAGGTGGTTCTCCACCTCCTTCCCGATTGCTATCCAGAATGGAGGAACTCGGTTTCCACATAACACACATATATGGCCTGACTGAAACCTACGGTCCCATAACCTCATGTGTTTGGAAGCCTGAATGGGCTAAGCTTCCATCAGAGGATCAATTCAAGCTGAAGACCCGGCAAGGGGTTCCTCACTTGGGAGTTTCCAAACAAGATGTCAAGAATCCCAGCACAATGGAAAGTGTTCTTCATGACGGTACTACAATTGGTGAAGTCATGATCAAGGGCAGTATAGTCATGAACGGATACTTCAAAAATGCTGAAGCTACAGCCAAAGCATTTGAAAATGGATGGTTTCACACTGGTGATTTAGGGGTCATTCATTCTGACGGCTACCTTGAGCTCAAGGATAGATCAAAAGACATTATAATCTCAGGGGGCGAGAATATTTGCAGCATCGAAGTTGAAACTGTTATTTATGCTCATCCACATGTACTTGAAGCTGCAGTTGTAGCACGACCTGATGATTTCTGGGGTGAAACACCGTGTGCTTTTGTGGAGCTGAAAGAAGATTTTGTTGAAGAAGAAGTTACTCCTGAAAGCATGATCAATTTCTGTCGCCATCGTTTACCACATTATATGGCTCCTCGAACTGTGATCTTTGGAGACCTACCAAAGACATCAACAGGAAAAATTCAGAAGTATTTGCTTCGGGAAAGAGCCAAAACTTTAGGCACAATATTTCCCAGAGACTATAAAAAGGAGTGA___AAGCGTCCATATATAACTTACGACATTAATGATCTACCAATTCACAAGCATAAAGGATTCTCATAGAATGCCATTGATGTCATATAGAGTTGCTTCAGTACTTTGGTGGTGCCTTACAGAGGAAATGGGTAATTTTTTCCACACTGACATAATGATCT

Fln Alignment:

Contig3932___PNVPATYEMHFGVPMAGAVLSTLNIRHDADTMSFILRHSEAKVVFVDYQFLKVTKAAVRILSQVKK---ELPLMIVIHELDKYRVSLNDD-HEDVLEYEKLLASGDPNFETRWPEDEWDAITLNYTSGTTSNPKGVVYSHRGAFINTISTILMWEMKFRPVYLWTVPMFHCNGWGFPWGMAAQGGTSICLRSVKAKDIFDAIEEHKVTHLGAAPTVLSIIANAPPHERRPLPHTVYVMTGGSPPPSRLLSRMEELGFHITHIYGLTETYGPITSCVWKPEWAKLPSEDQFKLKTRQGVPHLGVSKQDVKNPSTMESVLHDGTTIGEVMIKGSIVMNGYFKNAEATAKAFENGWFHTGDLGVIHSDGYLELKDRSKDIIISGGENICSIEVETVIYAHPHVLEAAVVARPDDFWGETPCAFVELK---EDFVEEEVTPESMINFCRHRLPHYMAPRTVIFGDLPKTSTGKIQKYLLRERAKTLGT
A9NWM6______________PNIPAAYEAHFGIPMAGAVLNSINIRLDARTIAFLLEHSRAVAVLVDQDFFMLLQEALGLMAKKHGSGFEPPFLVVIGDETCDEGNLKRALRSGAVEYEDFLQEGDPGFEWQPPDDEWQSIALGYTSGTTSSPKGVVLSHRGAYVASLGAALAWEMKGSGVYLWTLPMFHCNGWCYAWGMAAFCGTNICLRQVTARAIYASIAEHKVTHFCAAPVVLNTVVNCDPQDRVPIPRGISVMTAGSAPPASVLAKMEEQGFRVTHTYGLSETYGPSVVCAWKEEWDSLPPTDRARMNARQGVRYISLEGLDVVNPDSMVPVPADGSTVGEIVMRGNMMMKGYLRNPEANRESFRGGWFHSGDLAVKHPDGYIEIKDRSKDIIISGGENISSVEVENALYGHPRVLEASVVARPDERWGETPCAFITLKGSGDPNEDESRIGQDIMNYCRARLPGYMVPRSVVFGPLPKTATGKVQKHILRSKAKQMGS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain