SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3908

Length: 3047 nt

UniGene Fasta

>sp_v3.0_unigene3908
AGCAAAAGCGAAGACTAAAATCCTGCCCGCAACAATTTATTTATGCTAAAACCCTATTCTCAATTTATTTATGCTAAAACCCTGCTCTCTGCCTCTCAAGCTTTTTGGCCTGAAGAAGCATTGCGACTCTGAGCATATAAACCGTCGTTAAACCTTGGCGTTACTCTCAGGCTGATGCTGTTCATGGGGATCTAATGGTATTTAGCGCATTCTCAAAAAGTGGTTTGATGTCTGGACTCTGGAATGGGCTATTGCATGTTGAAAAGCTCTCAATTCATCACCTTTGGCTTTTTGAAGAAGTTAGTTGGGTGGCTTAACTTCTCAGCATTGGTACAATAGAGTAAGACATGCCAACAGGTTATTGGTTCTTTTCACTTCACACTGGTTCTTTCATATGCCAGATACAGTTATTGAGAAATGGCCTTCGGACAAATATCACTTCGTCAGCTAATTGTTACAAAAAAAGTCCTGCAGTCGTCAAAGAGGGCTCCACTTTCTCTCCGTGGATACTTACATTGCCCTTCAGATGAAACCCACATTTTGAGTTCAGCAGAGTGGTCTATATTGCGGTCACTCTCACAGTTACCTGCTGATCACCCCTTCCAGAAAGCTGATAAAGACAGGGATGAAGAGAACTGTCAGAAACGGAAAATCATCTTAGATGTGTCCACCAAACAGTGGCTAAAACACCCAGACGGGTTGATTCTGAGAGATGCTTCTCTGCTTGTTCTCAGGGGACAGGGACTCTCATCTGAAGGAGTCAGATTGATATCTCACTTCACCAGGACTTCTTCCACTGCAGCAGCTAAACAACGTGCCATTGAGGATGAAGAGGATGACAGTAAAGAGAAAGTTTCAAAGCAAAGAAAAATTGAAGCATCGCCAGAAGAATGTGACCAGGCTGTAGAAGGGTTGAGCTTAGTAAAAGCAAAGGCGAAACAAGTGCAGGATTTTCTCAAGAAAGATGAAAGATTTGTAAAGAAATTTTGGGCTACAATACTTGGAATCGGATCTGCACTAAAATTGGTGGCATCTATGAGCAGGGAAGATTGGGCCAGGAAACTTCATCAGTGGAAACATCATTTCTTGGAAGCATTGCAACATTATTGGGTTGGAACTAAACTTCTTTGGGCCGACATTAGGATATCTTTCAGGCTTCTACTGAAGCTTGCGAGTGGAAAGAACCTTTCACGGAGAGAAAGACAGCAGCTAACTAGAACAACAGCGGATATTTTCAGACTTGTACCATTTGCAGTCTTCATTATAGTTCCATTCATGGAGTTGTTGCTGCCAGTTTTTCTCAAAGTATTCCCCAATATGCTGCCTTCCACTTTCCAAGATAAGATGAAGGAACAGGAGGAACTGAAACGACGGTTGAATGCAAGGATTGAGTATGCGAAGTTCTTACAGGATACAGTCAAAGAAATGGCAAGAGAAATCAAAACATCTCGTAGTGGAGAACTTAAACAAACTGCTGAAGATTTGGATAACTTTATGAACAAGGTCCGTAAAGGTGCAACTGTATCAAACAAAGAACTTTTGGGCTTTGCAAAGCTTTTTAATGATGAGTTAACTTTGGACAACATTAGCAGGCCAAGGCTTGTAAATATGTGTAAATATATGGGGATCAAACCTTATGGAACTGATGCATATTTACGGTACATGCTACGTGCGAAGTTGGCAAGGATCAAGGAGGATGATAGAATGATCCAAAAAGAGGGTGTTGAGTCTCTTTCTGAAGATGAACTTAGACAAGCTTGTAGAGAGCGTGGAATGCTTGGTCTACTTTCAATTGAGGAAATGCGGAAACAACTGCATGATTGGTTGGATCTGTCTCTGAAGTATTCAGTACCTTCTTCCCTCTTAATCCTTTCAAGAGCATTTACAGTTTCTGGAAAGGTCAAGCCAGAAGAGGCTGTTCAGGCCACACTGTCCTCTCTTCCAGATGAGTTGGTTGAATCTGTAGGAGTTACTGCACTTCCAAGTGAAGATTCTGTTGCGGACCGTAGAAGGAAGCTAGAGTTCTTGGAAATGCAAGAGAAGCTCATTAAGGAGGAAGAAAAGAAAGAGAGAGAGGAGCAAGCAAGGCTGAAGGAGGAGGAAGCAATGAGTCAAAGAGATATTGCATTACAGGAGATGAATGTTTCCACAGCAAGAGAGGCACAAGAGTTGGCAAAAGCTAAGGCCATGGAGAAGCAGGAACAACTTTGCAAGCTCAGTCGTGCCTTAGCTGTGCTAGCTTCAGCTTCATCAGTTGGTGCTGAACGTGCTGAATTTTTGAGCCTTGTAAACAAAGAGATAGAGTTGTATAACAACATAGTAGATAAGCAAGGGGAAGAAGGTGTGGAAGTGGCCTTGAAGGCATATGATGCAGCAAGAGGACAAAATGACCAAGCAGCTGAGACTACTATCGGCAGCAAAGTTTCAGAAGCTCTCAGAAATAAGGTTGACGCTATGCTTCATATGCTAGAAAAGGAAATTGATGATGTGGATGCAAAAATTGGTGATAGATGGCGAATACTCGACAGAGATTCTGATGGAAAGGTTACCCCAGAGGAGGTAGCTGCAGCAGCTTCGTATGTCAAGGACATTCTCGGCCAGGAACCAGTGCAAAAATTAATTAGTGAGCTGGCCAAAGATACAGATGGGAAGATTCTGGTGGAGGATATTGTGAAGTTAGGGGTCAGAGTAAGTGATGAGGACGCAGAGCAGCAAGAAATGCAAATTCGTCATTAATGGGGTCCTGTTTCTTTGTCCATAGAAATAGATGGACAATTGTTTGAGAATATAAACTCTTATTTATATACGGATGAATCTTATATTGTAATGTAATTTCTTGCAGCACCATTAGACAATGAATCCTAGACACACGTCTTTATCCCTGTTGACATTGGCACCTTAAAAGAATGCCATGAAAAATGTTTCTTTCTGGGTCATCTTTTATGTGGTCCGGATTATTTTAATAAAATACCCAAGTTAGTAGTGGTATTGTCTCCTATAGGTTATGATACATTATTTATGTCTTTCAGCAATTTTAAACGGTAATC

Ace file of the UniGene sp_v3.0_unigene3908

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine zipper-ef-hand containing transmembrane protein, putative n=1 Tax=Ricinus communis RepID=B9RM04_RICCO	-	-	0.0	68%
FL-Next	sp=Caltractin; Atriplex nummularia (Old man saltbush) (Atriplex johnstonii).	-	-	0.0	29%
Sma3	Leucine zipper-ef-hand containing transmembrane protein, putative	-	-	5.237e-09	-

Source	Gene names
Sma3	A9008; At3g59820; CHLREDRAFT_179211; F5I14.6; F5I14.7; GSVIVT00010097001; GSVIVT00012143001; GSVIVT00034722001; H0306B06.8; MICPUCDRAFT_16800; MICPUN_82841; OSIGBa0092E01.4; OSJNBa0030C08.32; OSJNBa0067K08.12; OSTLU_50194; Os02g0608400; Os04g0496800; OsI_

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	LETM1-like	IPR011685	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65540.1	LETM1-like protein chr1:24362382-24366011 REVERSE LENGTH=736	69%
RefSeq	Arabidopsis thaliana	NP_176732.2	LETM1-like protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002312206.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P41210

Fln msg: your sequence is longer than subject: 773 - 167

Fln protein: MAFGQISLRQLIVTKKVLQSSKRAPLSLRGYLHCPSDETHILSSAEWSILRSLSQLPADHPFQKADKDRDEENCQKRKIILDVSTKQWLKHPDGLILRDASLLVLRGQGLSSEGVRLISHFTRTSSTAAAKQRAIEDEEDDSKEKVSKQRKIEASPEECDQAVEGLSLVKAKAKQVQDFLKKDERFVKKFWATILGIGSALKLVASMSREDWARKLHQWKHHFLEALQHYWVGTKLLWADIRISFRLLLKLASGKNLSRRERQQLTRTTADIFRLVPFAVFIIVPFMELLLPVFLKVFPNMLPSTFQDKMKEQEELKRRLNARIEYAKFLQDTVKEMAREIKTSRSGELKQTAEDLDNFMNKVRKGATVSNKELLGFAKLFNDELTLDNISRPRLVNMCKYMGIKPYGTDAYLRYMLRAKLARIKEDDRMIQKEGVESLSEDELRQACRERGMLGLLSIEEMRKQLHDWLDLSLKYSVPSSLLILSRAFTVSGKVKPEEAVQATLSSLPDELVESVGVTALPSEDSVADRRRKLEFLEMQEKLIKEEEKKEREEQARLKEEEAMSQRDIALQEMNVSTAREAQELAKAKAMEKQEQLCKLSRALAVLASASSVGAERAEFLSLVNKEIELYNNIVDKQGEEGVEVALKAYDAARGQNDQAAETTIGSKVSEALRNKVDAMLHMLEKEIDDVDAKIGDRWRILDRDSDGKVTPEEVAAAASYVKDILGQEPVQKLISELAKDTDGKILVEDIVKLGVRVSDEDAEQQEMQIRH*

Protein Length: 774

Fln nts: AGCAAAAGCGAAGACTAAAATCCTGCCCGCAACAATTTATTTATGCTAAAACCCTATTCTCAATTTATTTATGCTAAAACCCTGCTCTCTGCCTCTCAAGCTTTTTGGCCTGAAGAAGCATTGCGACTCTGAGCATATAAACCGTCGTTAAACCTTGGCGTTACTCTCAGGCTGATGCTGTTCATGGGGATCTAATGGTATTTAGCGCATTCTCAAAAAGTGGTTTGATGTCTGGACTCTGGAATGGGCTATTGCATGTTGAAAAGCTCTCAATTCATCACCTTTGGCTTTTTGAAGAAGTTAGTTGGGTGGCTTAACTTCTCAGCATTGGTACAATAGAGTAAGACATGCCAACAGGTTATTGGTTCTTTTCACTTCACACTGGTTCTTTCATATGCCAGATACAGTTATTGAGAA_-_ATGGCCTTCGGACAAATATCACTTCGTCAGCTAATTGTTACAAAAAAAGTCCTGCAGTCGTCAAAGAGGGCTCCACTTTCTCTCCGTGGATACTTACATTGCCCTTCAGATGAAACCCACATTTTGAGTTCAGCAGAGTGGTCTATATTGCGGTCACTCTCACAGTTACCTGCTGATCACCCCTTCCAGAAAGCTGATAAAGACAGGGATGAAGAGAACTGTCAGAAACGGAAAATCATCTTAGATGTGTCCACCAAACAGTGGCTAAAACACCCAGACGGGTTGATTCTGAGAGATGCTTCTCTGCTTGTTCTCAGGGGACAGGGACTCTCATCTGAAGGAGTCAGATTGATATCTCACTTCACCAGGACTTCTTCCACTGCAGCAGCTAAACAACGTGCCATTGAGGATGAAGAGGATGACAGTAAAGAGAAAGTTTCAAAGCAAAGAAAAATTGAAGCATCGCCAGAAGAATGTGACCAGGCTGTAGAAGGGTTGAGCTTAGTAAAAGCAAAGGCGAAACAAGTGCAGGATTTTCTCAAGAAAGATGAAAGATTTGTAAAGAAATTTTGGGCTACAATACTTGGAATCGGATCTGCACTAAAATTGGTGGCATCTATGAGCAGGGAAGATTGGGCCAGGAAACTTCATCAGTGGAAACATCATTTCTTGGAAGCATTGCAACATTATTGGGTTGGAACTAAACTTCTTTGGGCCGACATTAGGATATCTTTCAGGCTTCTACTGAAGCTTGCGAGTGGAAAGAACCTTTCACGGAGAGAAAGACAGCAGCTAACTAGAACAACAGCGGATATTTTCAGACTTGTACCATTTGCAGTCTTCATTATAGTTCCATTCATGGAGTTGTTGCTGCCAGTTTTTCTCAAAGTATTCCCCAATATGCTGCCTTCCACTTTCCAAGATAAGATGAAGGAACAGGAGGAACTGAAACGACGGTTGAATGCAAGGATTGAGTATGCGAAGTTCTTACAGGATACAGTCAAAGAAATGGCAAGAGAAATCAAAACATCTCGTAGTGGAGAACTTAAACAAACTGCTGAAGATTTGGATAACTTTATGAACAAGGTCCGTAAAGGTGCAACTGTATCAAACAAAGAACTTTTGGGCTTTGCAAAGCTTTTTAATGATGAGTTAACTTTGGACAACATTAGCAGGCCAAGGCTTGTAAATATGTGTAAATATATGGGGATCAAACCTTATGGAACTGATGCATATTTACGGTACATGCTACGTGCGAAGTTGGCAAGGATCAAGGAGGATGATAGAATGATCCAAAAAGAGGGTGTTGAGTCTCTTTCTGAAGATGAACTTAGACAAGCTTGTAGAGAGCGTGGAATGCTTGGTCTACTTTCAATTGAGGAAATGCGGAAACAACTGCATGATTGGTTGGATCTGTCTCTGAAGTATTCAGTACCTTCTTCCCTCTTAATCCTTTCAAGAGCATTTACAGTTTCTGGAAAGGTCAAGCCAGAAGAGGCTGTTCAGGCCACACTGTCCTCTCTTCCAGATGAGTTGGTTGAATCTGTAGGAGTTACTGCACTTCCAAGTGAAGATTCTGTTGCGGACCGTAGAAGGAAGCTAGAGTTCTTGGAAATGCAAGAGAAGCTCATTAAGGAGGAAGAAAAGAAAGAGAGAGAGGAGCAAGCAAGGCTGAAGGAGGAGGAAGCAATGAGTCAAAGAGATATTGCATTACAGGAGATGAATGTTTCCACAGCAAGAGAGGCACAAGAGTTGGCAAAAGCTAAGGCCATGGAGAAGCAGGAACAACTTTGCAAGCTCAGTCGTGCCTTAGCTGTGCTAGCTTCAGCTTCATCAGTTGGTGCTGAACGTGCTGAATTTTTGAGCCTTGTAAACAAAGAGATAGAGTTGTATAACAACATAGTAGATAAGCAAGGGGAAGAAGGTGTGGAAGTGGCCTTGAAGGCATATGATGCAGCAAGAGGACAAAATGACCAAGCAGCTGAGACTACTATCGGCAGCAAAGTTTCAGAAGCTCTCAGAAATAAGGTTGACGCTATGCTTCATATGCTAGAAAAGGAAATTGATGATGTGGATGCAAAAATTGGTGATAGATGGCGAATACTCGACAGAGATTCTGATGGAAAGGTTACCCCAGAGGAGGTAGCTGCAGCAGCTTCGTATGTCAAGGACATTCTCGGCCAGGAACCAGTGCAAAAATTAATTAGTGAGCTGGCCAAAGATACAGATGGGAAGATTCTGGTGGAGGATATTGTGAAGTTAGGGGTCAGAGTAAGTGATGAGGACGCAGAGCAGCAAGAAATGCAAATTCGTCATTAA___TGGGGTCCTGTTTCTTTGTCCATAGAAATAGATGGACAATTGTTTGAGAATATAAACTCTTATTTATATACGGATGAATCTTATATTGTAATGTAATTTCTTGCAGCACCATTAGACAATGAATCCTAGACACACGTCTTTATCCCTGTTGACATTGGCACCTTAAAAGAATGCCATGAAAAATGTTTCTTTCTGGGTCATCTTTTATGTGGTCCGGATTATTTTAATAAAATACCCAAGTTAGTAGTGGTATTGTCTCCTATAGGTTATGATACATTATTTATGTCTTTCAGCAATTTTAAACGGTAATC

Fln Alignment:

Contig3908___DAMLHMLEKEIDDVDAK--IGDRWRILDRDSDGKVTPEEVAAAASYVKDILGQEPVQKLISELAKDTDGKILVEDIVKLGVRVS
P41210______________DEFCHMMTAKIGERDTKEELMKAFRIIDQDNNGKISPEDIQRIAKELGENFTVKDIQDMIEEADRDRDGEVNVEEFLRMMKRTS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
2160	33		66		0.997452
2161	75			25	0.996473
2162			75	25	0.996473
2500	80		20		0.995493
2701		16	83		0.994512
2702	83		16		0.994512
2704		16	83		0.994512
2705	83		16		0.994512
2706			83	16	0.994512
2712	83			16	0.994512
2713			83	16	0.994512
2714	83		16		0.994512
2716		83		16	0.994512
2717	83			16	0.994512
2720	83		16		0.994512
2721	66		16	16	0.988813
2722		16	83		0.994512
2829			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain