SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3903

Length: 1445 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3903

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRELI domain containing protein	-	-	2.99878e-43	36%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%

Source	Gene names
Sma3	At5g13070; GSVIVT00024642001; OJ2056_H01.23; Os02g0717900; OsI_08707; OsI_31832; OsJ_08158; OsJ_29818; PHYPADRAFT_205470; PHYPADRAFT_94837; POPTRDRAFT_797116; RCOM_0451410; RCOM_1577310; T19L5_30;

Source	InterPros	Term	Type	e value	Identity
Sma3	PRELI/MSF1	IPR006797	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13070.1	MSF1-like family protein chr5:4148216-4149062 FORWARD LENGTH=183	66%
RefSeq	Arabidopsis thaliana	NP_196811.1	MSF1-like protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002299237.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SL81

Fln msg:

Fln protein: MVKAYTQEHVYMHPWERVTAANWRKFVDPENRSTLSHIVEVDTVNRTLDLGSGRLYSTRLITVNTPGPWWVQKVIGQNVCHSVESSVVDIKNRSMEMVTRNVTLKNFIEVEEKCSFAPHPQHPQWTLYKQETSIRCATLSALASMAEKVEQRCAEKFLQNSVKGREVMERICNHYMEAESNGIAF*

Protein Length: 187

Fln nts: GAAAGCTGATCGGACATTTACGCCTTCTTGAAGACCGCTGAACGAGGTTCCATCTTTTCGATTGGCGTCGGGGGAAACGGTGGTCTGCAACTGCAAAAAAA_-_ATGGTGAAGGCATATACACAGGAGCACGTCTACATGCATCCCTGGGAGCGGGTGACCGCAGCAAACTGGAGAAAATTCGTGGATCCTGAGAACAGATCCACGCTTTCCCACATCGTGGAGGTGGACACCGTGAATCGAACCCTTGACCTTGGCTCGGGAAGACTGTACAGCACTCGCCTGATAACGGTGAATACCCCCGGCCCGTGGTGGGTGCAGAAGGTAATCGGTCAAAACGTGTGCCACTCCGTTGAGTCGTCGGTGGTGGACATCAAGAATCGATCGATGGAGATGGTGACGCGGAATGTTACTCTGAAGAATTTCATCGAGGTGGAGGAGAAATGTTCGTTCGCCCCGCATCCTCAGCATCCGCAGTGGACCCTTTACAAGCAGGAGACGAGCATACGTTGCGCCACTCTCTCGGCTCTGGCGTCCATGGCAGAGAAAGTAGAGCAGCGCTGTGCAGAAAAATTCCTGCAGAACAGCGTAAAGGGGAGGGAGGTTATGGAGAGGATCTGTAATCACTACATGGAGGCTGAGTCCAATGGTATCGCCTTCTGA___GATTCAGGTTTGGGATTATTTACTATTTTTTTTCGCGGGGCCGGAGGGGGCGACCTTCAGTTAGGGTTCACAGAACTATTCTATTTTTTGCATGCGGCATAGGTATTCCTGAGCCTGAAAATGGAAGGATAAGAGGGGTAATGGAAATCGTAGTTCACATTATTTAATGTTTAATGTTTTATTGGGATTATGGATTCGTTATTTTGAAAAAAAAAACTCGAGGGTTTGTAGAAAACAAGAGCTAGGGGATCGGGGATCTATTCCCTGTGCTATCAAAAGAATGTGTTTTTTTCTTTGGGAAATTAAATGACAGAGGATTTAAGGCAATCACGATGCCTTATGAAACTTTACACAGAACATTATGGATTCGTTATTTTGAAAAAAAACTCGAGGGTTTGGAGAAAATAAGAGCTAGGGTTCTATGCTCCGTGCTATCAAAAAAATGTTATGTTCCTTCCAGAAATTAAAATCACAGAGGATTTGAGGCAATCACGATGCTTTCTGAAACTTTACACAGAACATTTAGCTGCACATCTATTATGCTTTTTATTTTTGCATGCGTGTGTGCTTCAGCTCGTGCTGTAGAAGAATTTCGTCCATCTGTGACATCCATCAAGCTCCATTCAATTATGGACATTTTCTACCCATTCAATAGTGCAGATATACATTTCATAAATGGGCATTTTTGGCCATTTAATGGTATACATATATTGTATTTCATAAGCCACACGTAATATAGATTTTGCATCCCAGATAGAGGGTTATGCTTTAAAACTTAGCATGGAC

Fln Alignment:

Contig3903___MVKAYTQEHVYMHPWERVTAANWRKFVDPENRSTLSHIVEVDTVNRTLDLGSGRLYSTRLITVNTPGPWWVQKVIGQNVCHSVESSVVDIKNRSMEMVTRNVTLKNFIEVEEKCSFAPHPQHPQ-WTLYKQETSIRCATLSALASMAEKVEQRCAEKFLQNSVKGREVMERICNHYMEAESNGIA
D7SL81______________MVKAYTQEHVYKHPWERVTSASWRKFTDPENKRILSHIVEVDTLNRKLDSASGKLYTTRVITVHAPGPWFIRKIIGQDICHCVESTIVDAQSRSMQLTTRNSSLQKFVEVEEKIRYEPHPDNPNGWTICQQETSIRIKPLSALASMAEKVEQRCAEKFLQNSVKGREVMERICK-YLEAESRGIS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
536	28			71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain