SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3891

Length: 1848 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3891

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb\|CAA66480.1\| transcription factor [Vicia faba var. minor]	-	-	0.0	70%
FL-Next	sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris).	-	-	0.0	71%
Sma3	Recombination signal sequence recognition protein 1	-	-	5.599e-17	-

Source	Gene names
Sma3	AT3G28730; At3g28730; CHLREDRAFT_189879; GSVIVT00020888001; HMG; HMGB905; HMGB906; Os01g0184900; Os05g0182600; OsI_00684; OsI_18726; OsJ_00664; OsJ_17363; PHATRDRAFT_11409; PHYPADRAFT_21655; POPTRDRAFT_577589; POPTRDRAFT_712808; R1G1A; RCOM_0855030; SSRP1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	nuclear euchromatin	GO:0005719	Cellular Component	-
Sma3	FACT complex	GO:0035101	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000910	-	-
Sma3	Structure-specific recognition protein	IPR000969	-	-
Sma3	Domain of unknown function DUF1747	IPR013719	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G28730.1	ATHMG, SSRP1, NFD, HMG high mobility group chr3:10784954-10788498 FORWARD LENGTH=646	70%
RefSeq	Arabidopsis thaliana	NP_189515.1	FACT complex subunit SSRP1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002324036.1	high mobility group family [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O04235

Fln msg: Distance to subject end: 92 aas, your sequence is shorter than subject: 553 - 642

Fln protein: MADGQLFNNILLGGRGGTNPGQLRIHSGGIVWRKQGGGKVVEMGRPEISSLSWTRIPKGYQLGVKLKAGLNVKFNGFREQDVNNLSNFMTNTLGVTPEEKQLSISGRNWGEVNLEGNMLTFLVGSKPAFEVSLADVSQTQLQGKNDVVLEFHVDDTTGANEKDSLMELSFHIPNSNTTFAGDEASPPAQIFREKIMSMADVGPSGAEAVALFEDIAILTPRGRYTIELHLSFLRLQGQANDFKIQYSSVIRLFVLPKSPHTLVVITLDPPIRKGQTFYPHIVLQFAMEELAECALSMNEELLNTKYKDKLEPSYKGLSHEVFTQILRGLSAAKVTRPGKFRSSQDGYAVRASLKAEDGILYPLEKSFFFLPKPPTLILHEEIEYLEFERHGTGGASSISSHYFDLIIRLKSEQEHQFRNIQRNEYHNLFNFISSKGLKIMNLGDAHGTSGVAAVLENSDDEAVDPHLERIKSAREGGAGEDSDEEDEDFVAEKDDAGSPTDDSEEEQSDASESEETKEKPAKKEVKKKEAPVAKVTGTKRKKKDEEEDGGKKR

Protein Length: 554

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAACCACAGTGATAAATATAGGTAGCAAGTTTACAAAAGGCAAGTTCTCTGGTTCAGTTAACAAGGGGGCTAAGGCGAATATCATCGAACCCTGAAAAATCTCCACTAAGTTGCACGATCATAAAGATCAGTAACTTAGAACAGCAGGCGGCC_-_ATGGCAGATGGCCAATTATTTAACAATATTTTACTCGGAGGCAGAGGTGGAACCAATCCGGGACAACTGAGGATCCATTCAGGAGGCATAGTATGGAGAAAGCAGGGTGGAGGGAAGGTGGTAGAAATGGGCAGACCTGAAATCTCGAGCCTCAGTTGGACCAGGATTCCCAAGGGTTACCAGCTGGGGGTCAAATTAAAAGCTGGTTTGAATGTCAAGTTTAATGGCTTTCGTGAACAGGATGTCAACAATTTGTCCAATTTTATGACAAACACCTTGGGAGTAACTCCTGAAGAAAAACAACTTTCCATAAGTGGACGGAACTGGGGAGAAGTGAATCTAGAAGGAAACATGCTCACATTTTTGGTTGGTTCGAAACCAGCTTTTGAGGTATCCTTGGCAGATGTATCTCAAACACAACTCCAAGGAAAGAATGATGTTGTCCTAGAATTCCATGTGGATGATACAACTGGAGCCAATGAGAAAGATTCTCTGATGGAACTGAGCTTCCACATTCCAAACTCCAATACAACATTTGCTGGGGATGAGGCCAGCCCTCCAGCACAGATTTTTCGAGAGAAAATCATGTCAATGGCAGATGTGGGGCCATCGGGTGCAGAAGCAGTTGCATTGTTTGAGGACATTGCTATCCTTACTCCAAGAGGTCGTTACACTATTGAGCTCCATCTATCTTTCTTGCGGCTTCAAGGGCAGGCCAATGATTTTAAAATTCAATACAGCAGTGTTATTCGCCTTTTTGTTCTTCCAAAGTCACCTCACACACTTGTGGTGATCACCCTTGATCCACCAATTCGCAAAGGTCAAACATTTTACCCACATATTGTCTTGCAGTTTGCAATGGAAGAGCTAGCTGAGTGTGCACTCTCAATGAATGAAGAGCTGCTAAATACCAAGTACAAGGACAAGCTTGAACCTTCATATAAGGGTTTATCACATGAAGTGTTTACACAAATCTTGCGTGGTCTATCTGCTGCCAAAGTTACACGGCCAGGAAAGTTTCGCAGCAGTCAAGATGGTTATGCAGTCAGAGCATCACTTAAGGCTGAAGATGGAATCTTATATCCTCTGGAAAAGAGCTTTTTCTTCTTGCCTAAACCACCAACTCTTATTCTTCATGAAGAGATTGAATATCTTGAATTCGAGAGACATGGCACTGGTGGTGCTAGTAGTATATCTTCTCACTATTTTGATCTTATCATAAGACTGAAAAGTGAGCAAGAACACCAGTTCCGCAACATTCAACGTAATGAATATCATAATCTTTTCAACTTCATCAGTTCCAAGGGATTGAAAATAATGAACTTAGGAGATGCACATGGCACCAGTGGAGTTGCTGCCGTTCTCGAGAATTCGGATGATGAAGCTGTGGATCCACATCTTGAACGTATCAAAAGTGCACGTGAAGGCGGTGCTGGAGAAGATAGTGATGAAGAGGATGAGGACTTTGTCGCAGAAAAGGATGACGCAGGATCACCGACAGATGATTCAGAGGAAGAGCAGTCAGATGCTAGTGAATCTGAAGAAACCAAGGAAAAACCTGCAAAGAAGGAAGTGAAGAAAAAGGAGGCACCTGTTGCAAAAGTGACAGGAACAAAGAGGAAAAAGAAGGACGAGGAAGAAGATGGTGGAAAGAAGAGG

Fln Alignment:

Contig3891___MADGQLFNNILLGGRGGTNPGQLRIHSGGIVWRKQGGGKVVEMGRPEISSLSWTRIPKGYQLGVKLKAGLNVKFNGFREQDVNNLSNFMTNTLGVTPEEKQLSISGRNWGEVNLEGNMLTFLVGSKPAFEVSLADVSQTQLQGKNDVVLEFHVDDTTGANEKDSLMELSFHIPNSNTTFAGDEASPPAQIFREKIMSMADVGPSGAEAVALFEDIAILTPRGRYTIELHLSFLRLQGQANDFKIQYSSVIRLFVLPKS--PHTLVVITLDPPIRKGQTFYPHIVLQFAMEELAECALSMNEELLNTKYKDKLEPSYKGLSHEVFTQILRGLSAAKVTRPGKFRSSQDGYAVRASLKAEDGILYPLEKSFFFLPKPPTLILHEEIEYLEFERHGTGGASSISSHYFDLIIRLKSEQEHQFRNIQRNEYHNLFNFISSKGLKIMNLGDA-HGTSGVAAVLENSDDEAVDPHLERIKSARXXXXXXXXXXXXXXFVAEKDDAGSPT
O04235______________MTDGHLFNNITLGXRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTNQLGVQIKDGLLYKFTGFRDQDVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFVGDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDTVVDSELAISEDLYNSKYKDKLELSYKGLIHEVFTTVLRGLSGGKVTKPGNFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGS---NMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNIADAQQAVGGVAKVLENDDDDAVDPHLERI---RNEAGGDESDEEDSDFVIDKDDGGSPT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
126		87		12	0.992554
812	14		85		0.993533
1390			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain