SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3877

Length: 4323 nt

UniGene Fasta

>sp_v3.0_unigene3877
TCTTGGTCGCCGCTTGTGCAAGTAATTCGTCGGGTAGATAAGGGATCCGGAGAAGTGCTCTCTGTCTCAATTCCGCCGGCAGGAAGACAAGGTATTGGGAGGAATGCAATCAGGGGATTGCGGAAGAATCCGGGGTGCGCTGGGCAGAGAAGAAGCTATGCAACTCGGGACGAGGGAGCAGAATTCGAGGCTGCTACAAGGGCGCAGGTAGAGAAACGGAAAAGAATCTCCATCCCAAGCAGAGCAGAACATTGCAAAAAGAAAGAGCAATAGAAAGCCCAGCCAACAGAGAAGAATCCATCCTCTCCAGCGAGAAAAATGCAGTTTTAAGCCGACAGGAAAAGGAAAGAAGAGACTCTGTTCTTGTGCCCTGGCAGACCTCTCAGAAGAAGAATGTCCAAAGTGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTAAAATGATGTTAGCTGGGCCAATGAAATGCTTTGACGTTCAGTGTATTCCTTCCAAAGATGCAAGTTCACTTCCTCTTTTACCAGTGAAAAGCATTAAAACAGACTTTGGACAGAAAAGCTATGGAGGCAGAGTATACTTTAGTGGTAAAAGATCAATACGAATGAGCAAAAGGTCACACAACAGAGGCATTTTCTTTGATAGAAGAGACATTCTTGGTCAAGTATATACTCTGATTCCGAAGGAAAGAAGACATCTTGCTAAAATACATGCATCTTCCTCATCAACAACAAATACAGATGAAAGTAAAAAATCATCACAATATTCAAAAGAGAAATCTGAAGATTATATCAGCAGACTTTTAAGAGAAAAACCTAGTGAGATAGAACAAAAGTTTCTTATAGGAGATAAGTTTTATACTTCGAGAGAAAGGGAGAATCTAAAAGCTTCATTTCAGAAGCGAATCAAGAATGCATTTAGCGAACTTGCCAGCAAATTAGTCCCAATTGATATCCAATTGCAGGAGCGAATCAGGAATGGATTAAGTGAACTTACCAGCAAATTACTGTCAAAGGATATCCAAGAGACACGACAAAGTGAAGAGAAACAGCATGGAGCATCCAGTGGAGACATTGATAATGAGATTCCATCTAACCCTGTTTACCTCAAGGATCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCAGAAGAGGCATTCAAGTTCCGTACATCAGAGATGGGTGAGTTCAACAGTATATTGGGGACATTGCCAAAAATGCACTTGGAGGACTTCCTTAAAGCAATGCGGGCAAATCAGATTGAAATGCTGACATCAAGGGCTGTCCAAAATCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGAACTTCCAGCAGAGAAGAGCTCACAAAGAAAGAAGTGGACCATACATTTGTCAGAGGAAGAAGCACAAGCTGTTCTAGGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACTCCTTATGTAGTTCCACCACCTGTTATGCCTCATCCTGTGGCATCTTCCATATCTAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACGGTGGGAGGTCTTCTATCAGCAATGGTCTTTGCAGTCACTGGCCTATTGGCTGTTATTGCAATTGATTTTGTCTGGCCTTTGGTGTTTTCTTTGCTCAAGGCTGTTTCTGTGCTTCTTCTAATGTGTGCGAAGGAAGTGTGGAATATTTTGGTTACAGACAGTAGCATGGGAGGATTTCTTGGTCGTTACCCAAAAATTTCTGTTTTTTTAGCATCTGGTGGTTTCTGGGCAATGCTTCAGGCAGCATTTTATATTGTACTTATAGTCCTGGCCATGACTATTCTTATAAGGTTCACTATTGTAAGAAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGCATTTGGGCAGTCAAAACCACAGGCTCGGGTAGAGGGTTCAACTGGAGTTATGTTTAAAGATGTTGCAGGCATTGATGACGTAGTGGGGGAGTTGCAAGAGTTGGTGAGATATTTGAGGAATCCAGAATTGTACAATAAAATAGGAACAAAAGCTCCACATGGGGTACTCTTAGCAGGTCCGCCAGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCAGGTGTACCTTTCTACCAAATGGCTGGGTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTGTTCATTGATGAAATTGATGCTTTAGGAGCAAAGCGCCAGGCACTTTCAGATCAGGCTACTGAGGAAGAGTACGATGCTGGTGCACAGGAAAGGGAAACAACCTTGAACCAGCTTTTGATAGAGCTCGATGGATTTGACACCGGTCAGGGAGTCATATTTTTAGGTGCAACCAATCGTATGGATCTACTAGATCCTGCATTATTGCGACCAGGCCGTTTTGATCGCAAGATTAAAGTAAGTCCTCCTGGGGCAAAGGGGCGATTGGAGATTCTTAAAGTCCATGCAAATAGAGTGAAGCTATCGCCTTCTGTTGACCTTTCTGTTTATGCCAACAACCTGCCAGGATGGTCAGGAGCACAGCTTGCACAGCTTATTCAAGAGGCTGCTTTGGTCGCTGTTAGGCATGGCCATGATTCAATTGTTCAATCTGACATGAATAAGGCAGTTGACAGGCTTACAATTGGGCCAGAGCGTAAAGGTATTGAACAAATATCACCATTTCTCTGGCGGAGGGCAACAGCCGAAGTCGGCATTGCATTGGCATCACATCTTTTGCGGCGCTTGGAGAATGCCTGTGTTGAAAGTTGTAATCGAATATCTATAATTCCTTGTGGTGACACACTTTCACGAACTATTTTTAACCGACTTGATGAGGAGGCTTATATTTTTGAGCGGCGACCCCAACTGCTACATCGATTGCAGGTAATGCTAGGGGCCAGGGCAGCTGAAGAGGTGATGTATGGACGCAATACATCGACAATATCATTGAGATACCTTTCAGATGCATCTTGGCTTGGACGGAAAATCATTTCTATATGGAACTTGGAGAATCCTATGGTTATACATGGAGAAGCAGCTCCCTGGAAACGAACTCCAGGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTATATGATGATTATGGTCTCTATGAAAGTCCTCTCAACTACAATTTGGAAAATGATATTGTTCTCAGGACAGAGAAATTGGTGAATGATATGTACCAGAACATATTTACAATGATACATCATTATCATGCAGCTTTGGCCAAAGCTGTTTACGTTGTCATGGAAATGCAGGAGATCACAGGTGATGACCTTGATGTCATAATTGATCAATATCCAGCAGATACTCCTGTGCATCTTGTAGAAGAAGAGGAAAATCCAGGAAGCTTGCCTCCAAGGGATGGAATTCAGCAAATGGTTCCTTTGGGTACATCGGATTCATCAGCTATATCCTGGAAGAAGACGAGTCATGAAGAAGAGACGCTTAGCTCCAAGAGCGTTAATTAGGACTTACGTAGTCCTTGCATTGTTATCTGTTTTTCATCTTTTGAACATGCATTGGAAAGCAGATGTGATTGGTTGACTGCCCTCAAAGATAATCTGGAGAGTGAAATGCAGAGTGCAATGAGTGATTATGTGAAGAGAATGGAAGGGCAAGAATTTTGCTAGGAAATTTTCATCTGGGACACGAAGAATTTCGTTGCACTTGTGTCTTGTTACAGGCAAGAGAAAATTGTGCATTTGGAAATGCCATGGTAATTATTGTGCTCATTTTTCAAAATATTGCCTTCTTGTCTAAGATGGAAGAATAGCTTTGTATAGCATATGAAATGTGTTCTAATGTTTAACATCCTTCGTTATGTGCCGAAAGCCTATGTATTGTTAAACTTTTGGCTTCATTGGCTTCTTCCAATGTTGGTGCTGTTATATTTTTTCTGCAAAGATTCCTGTTCAATAATATAACTCCCAAGTCCCAAGGGGGCGAGGGATGTCAGTTTGTTAAGACCTGTAGTAATCTCCAATCTTTTTCCCAGATGCACGAATTTAAGAAGCATCATTTATTTCATTTGGAGAAAAACAGAATTTGTGCCCATTGTGAATTGATGACTTTTTAATAAACCCAAACCTCAATTACTGAATATGACTAAAACCGACTTTCATGGCAACTTGAAGGTTTTCTACCTAAAGCAAGATATCCTCCAGACAAATTAAATGTAGGATCAGTATTTTCACCTGATTTGAACATATAAAATCATTGTG

Ace file of the UniGene sp_v3.0_unigene3877

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FtsH extracellular protease [Arabidopsis thaliana] gb\|AAB63626.1\| cell division protein isolog [Arabidopsis thaliana] emb\|CAB43894.1\| cell division protein-like [Arabidopsis thaliana] emb\|CAB81312.1\| cell division protein-like [Arabidopsis thaliana] gb\|AE	-	-	0.0	59%
FL-Next	sp=ATP-dependent zinc metalloprotease FtsH; Guillardia theta (Cryptomonas phi). Plastid; Chloroplast.	-	-	0.0	37%
Sma3	Cell division protein ftsH, putative	-	-	4.188e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	1.002e-23	-
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	5.242e-13	-

Source	Gene names
Sma3	AT4g23940; AT5G42270; At3g02450; At3g02450/F16B3.8; At3g47060; At4g23940; At5g42270; At5g58870; B1151A10.26-1; CHLREDRAFT_116904; CHLREDRAFT_190592; CHLREDRAFT_72788; F13I12.110; F16B3.8; FTSH; FTSH2; FTSH3; FTSH5; FTSH7; FTSH9; FTSHi1; FtsH9; GSVIVT00022

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23940.1	FtsH extracellular protease family chr4:12437108-12441841 FORWARD LENGTH=946	62%
RefSeq	Arabidopsis thaliana	NP_567691.1	FtsH extracellular protease [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002299463.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O78516

Fln msg: your sequence is longer than subject: 694 - 631

Fln protein: MPHPVASSISSRVMIELTMITSVVTAAAFTVGGLLSAMVFAVTGLLAVIAIDFVWPLVFSLLKAVSVLLLMCAKEVWNILVTDSSMGGFLGRYPKISVFLASGGFWAMLQAAFYIVLIVLAMTILIRFTIVRRPKDFRKWDIWQAIAFGQSKPQARVEGSTGVMFKDVAGIDDVVGELQELVRYLRNPELYNKIGTKAPHGVLLAGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEVLVGVGAARVRDLFKRAKVNKPSVVFIDEIDALGAKRQALSDQATEEEYDAGAQERETTLNQLLIELDGFDTGQGVIFLGATNRMDLLDPALLRPGRFDRKIKVSPPGAKGRLEILKVHANRVKLSPSVDLSVYANNLPGWSGAQLAQLIQEAALVAVRHGHDSIVQSDMNKAVDRLTIGPERKGIEQISPFLWRRATAEVGIALASHLLRRLENACVESCNRISIIPCGDTLSRTIFNRLDEEAYIFERRPQLLHRLQVMLGARAAEEVMYGRNTSTISLRYLSDASWLGRKIISIWNLENPMVIHGEAAPWKRTPGFTGPPLNFEGSLYDDYGLYESPLNYNLENDIVLRTEKLVNDMYQNIFTMIHHYHAALAKAVYVVMEMQEITGDDLDVIIDQYPADTPVHLVEEEENPGSLPPRDGIQQMVPLGTSDSSAISWKKTSHEEETLSSKSVN*

Protein Length: 695

Fln nts: TCTTGGTCGCCGCTTGTGCAAGTAATTCGTCGGGTAGATAAGGGATCCGGAGAAGTGCTCTCTGTCTCAATTCCGCCGGCAGGAAGACAAGGTATTGGGAGGAATGCAATCAGGGGATTGCGGAAGAATCCGGGGTGCGCTGGGCAGAGAAGAAGCTATGCAACTCGGGACGAGGGAGCAGAATTCGAGGCTGCTACAAGGGCGCAGGTAGAGAAACGGAAAAGAATCTCCATCCCAAGCAGAGCAGAACATTGCAAAAAGAAAGAGCAATAGAAAGCCCAGCCAACAGAGAAGAATCCATCCTCTCCAGCGAGAAAAATGCAGTTTTAAGCCGACAGGAAAAGGAAAGAAGAGACTCTGTTCTTGTGCCCTGGCAGACCTCTCAGAAGAAGAATGTCCAAAGTGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTAAAATGATGTTAGCTGGGCCAATGAAATGCTTTGACGTTCAGTGTATTCCTTCCAAAGATGCAAGTTCACTTCCTCTTTTACCAGTGAAAAGCATTAAAACAGACTTTGGACAGAAAAGCTATGGAGGCAGAGTATACTTTAGTGGTAAAAGATCAATACGAATGAGCAAAAGGTCACACAACAGAGGCATTTTCTTTGATAGAAGAGACATTCTTGGTCAAGTATATACTCTGATTCCGAAGGAAAGAAGACATCTTGCTAAAATACATGCATCTTCCTCATCAACAACAAATACAGATGAAAGTAAAAAATCATCACAATATTCAAAAGAGAAATCTGAAGATTATATCAGCAGACTTTTAAGAGAAAAACCTAGTGAGATAGAACAAAAGTTTCTTATAGGAGATAAGTTTTATACTTCGAGAGAAAGGGAGAATCTAAAAGCTTCATTTCAGAAGCGAATCAAGAATGCATTTAGCGAACTTGCCAGCAAATTAGTCCCAATTGATATCCAATTGCAGGAGCGAATCAGGAATGGATTAAGTGAACTTACCAGCAAATTACTGTCAAAGGATATCCAAGAGACACGACAAAGTGAAGAGAAACAGCATGGAGCATCCAGTGGAGACATTGATAATGAGATTCCATCTAACCCTGTTTACCTCAAGGATCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCAGAAGAGGCATTCAAGTTCCGTACATCAGAGATGGGTGAGTTCAACAGTATATTGGGGACATTGCCAAAAATGCACTTGGAGGACTTCCTTAAAGCAATGCGGGCAAATCAGATTGAAATGCTGACATCAAGGGCTGTCCAAAATCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGAACTTCCAGCAGAGAAGAGCTCACAAAGAAAGAAGTGGACCATACATTTGTCAGAGGAAGAAGCACAAGCTGTTCTAGGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACTCCTTATGTAGTTCCACCACCTGTT_-_ATGCCTCATCCTGTGGCATCTTCCATATCTAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACGGTGGGAGGTCTTCTATCAGCAATGGTCTTTGCAGTCACTGGCCTATTGGCTGTTATTGCAATTGATTTTGTCTGGCCTTTGGTGTTTTCTTTGCTCAAGGCTGTTTCTGTGCTTCTTCTAATGTGTGCGAAGGAAGTGTGGAATATTTTGGTTACAGACAGTAGCATGGGAGGATTTCTTGGTCGTTACCCAAAAATTTCTGTTTTTTTAGCATCTGGTGGTTTCTGGGCAATGCTTCAGGCAGCATTTTATATTGTACTTATAGTCCTGGCCATGACTATTCTTATAAGGTTCACTATTGTAAGAAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGCATTTGGGCAGTCAAAACCACAGGCTCGGGTAGAGGGTTCAACTGGAGTTATGTTTAAAGATGTTGCAGGCATTGATGACGTAGTGGGGGAGTTGCAAGAGTTGGTGAGATATTTGAGGAATCCAGAATTGTACAATAAAATAGGAACAAAAGCTCCACATGGGGTACTCTTAGCAGGTCCGCCAGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCAGGTGTACCTTTCTACCAAATGGCTGGGTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTGTTCATTGATGAAATTGATGCTTTAGGAGCAAAGCGCCAGGCACTTTCAGATCAGGCTACTGAGGAAGAGTACGATGCTGGTGCACAGGAAAGGGAAACAACCTTGAACCAGCTTTTGATAGAGCTCGATGGATTTGACACCGGTCAGGGAGTCATATTTTTAGGTGCAACCAATCGTATGGATCTACTAGATCCTGCATTATTGCGACCAGGCCGTTTTGATCGCAAGATTAAAGTAAGTCCTCCTGGGGCAAAGGGGCGATTGGAGATTCTTAAAGTCCATGCAAATAGAGTGAAGCTATCGCCTTCTGTTGACCTTTCTGTTTATGCCAACAACCTGCCAGGATGGTCAGGAGCACAGCTTGCACAGCTTATTCAAGAGGCTGCTTTGGTCGCTGTTAGGCATGGCCATGATTCAATTGTTCAATCTGACATGAATAAGGCAGTTGACAGGCTTACAATTGGGCCAGAGCGTAAAGGTATTGAACAAATATCACCATTTCTCTGGCGGAGGGCAACAGCCGAAGTCGGCATTGCATTGGCATCACATCTTTTGCGGCGCTTGGAGAATGCCTGTGTTGAAAGTTGTAATCGAATATCTATAATTCCTTGTGGTGACACACTTTCACGAACTATTTTTAACCGACTTGATGAGGAGGCTTATATTTTTGAGCGGCGACCCCAACTGCTACATCGATTGCAGGTAATGCTAGGGGCCAGGGCAGCTGAAGAGGTGATGTATGGACGCAATACATCGACAATATCATTGAGATACCTTTCAGATGCATCTTGGCTTGGACGGAAAATCATTTCTATATGGAACTTGGAGAATCCTATGGTTATACATGGAGAAGCAGCTCCCTGGAAACGAACTCCAGGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTATATGATGATTATGGTCTCTATGAAAGTCCTCTCAACTACAATTTGGAAAATGATATTGTTCTCAGGACAGAGAAATTGGTGAATGATATGTACCAGAACATATTTACAATGATACATCATTATCATGCAGCTTTGGCCAAAGCTGTTTACGTTGTCATGGAAATGCAGGAGATCACAGGTGATGACCTTGATGTCATAATTGATCAATATCCAGCAGATACTCCTGTGCATCTTGTAGAAGAAGAGGAAAATCCAGGAAGCTTGCCTCCAAGGGATGGAATTCAGCAAATGGTTCCTTTGGGTACATCGGATTCATCAGCTATATCCTGGAAGAAGACGAGTCATGAAGAAGAGACGCTTAGCTCCAAGAGCGTTAATTAG___GACTTACGTAGTCCTTGCATTGTTATCTGTTTTTCATCTTTTGAACATGCATTGGAAAGCAGATGTGATTGGTTGACTGCCCTCAAAGATAATCTGGAGAGTGAAATGCAGAGTGCAATGAGTGATTATGTGAAGAGAATGGAAGGGCAAGAATTTTGCTAGGAAATTTTCATCTGGGACACGAAGAATTTCGTTGCACTTGTGTCTTGTTACAGGCAAGAGAAAATTGTGCATTTGGAAATGCCATGGTAATTATTGTGCTCATTTTTCAAAATATTGCCTTCTTGTCTAAGATGGAAGAATAGCTTTGTATAGCATATGAAATGTGTTCTAATGTTTAACATCCTTCGTTATGTGCCGAAAGCCTATGTATTGTTAAACTTTTGGCTTCATTGGCTTCTTCCAATGTTGGTGCTGTTATATTTTTTCTGCAAAGATTCCTGTTCAATAATATAACTCCCAAGTCCCAAGGGGGCGAGGGATGTCAGTTTGTTAAGACCTGTAGTAATCTCCAATCTTTTTCCCAGATGCACGAATTTAAGAAGCATCATTTATTTCATTTGGAGAAAAACAGAATTTGTGCCCATTGTGAATTGATGACTTTTTAATAAACCCAAACCTCAATTACTGAATATGACTAAAACCGACTTTCATGGCAACTTGAAGGTTTTCTACCTAAAGCAAGATATCCTCCAGACAAATTAAATGTAGGATCAGTATTTTCACCTGATTTGAACATATAAAATCATTGTG

Fln Alignment:

Contig3877___WAMLQAAFYIVLIVLAMTILIRFTIVRRPKDFRKWDIWQAIAFGQSKPQARVEGSTGVMFKDVAGIDDVVGELQELVRYLRNPELYNKIGTKAPHGVLLAGPPGCGKTLLAKAIAGEAGVPFYQMAGSEFVEVLVGVGAARVRDLFKRAKVNKPSVVFIDEIDALGAKRQALSDQATEEEYDAGAQERETTLNQLLIELDGFDTGQGVIFLGATNRMDLLDPALLRPGRFDRKIKVSPPGAKGRLEILKVHANRVKLSPSVDLSVYANNLPGWSGXXXXXXXXXXXXXXVRHGHDSIVQSDMNKAVDRLTIGPERKGIEQISPFLWRRATAEVGIALASHLLRRLENACVESCNRISIIPCGDTLSRTIFNRLDEEAYIFERRPQLLHRLQVMLGARAAEEVMYG-RNTSTISLRYLSDASWLGRKIISIWNLENPMVIHGEAAPWKRTPGFTGPPLNFEGSLYDDYGLYESPLNYNLENDIVLRTEKLVNDMYQNIFTMIHHYHAALAKAVYVVMEMQEITGDDLDVIIDQY
O78516______________WSLIGNLIFPILLIAGLAFLFR-----RSSNLPGGP-GQAMNFGKSKARFQMEAKTGVTFNDVAGVDEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGT--------GIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEIDASIDRVIAGMEGKALVD-SKTKRLIAYHEVGHAIIGTLLKH-----HDPVQKVTLVPRGQAKGLTWFTPSEDQSLI--SRSQILARIMGALGGRAAEEVVFGLPEVTTGAGNDLQQVTSMARQMVTRFGMSNIGPLSLES---QNSDPFLGRTMGSSSQYSED-----------IASRIDMQVRAIIQHCHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGDF

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
159	13			86	0.999973
207		14	85		0.999981
255		87	12		0.992554
617	14		85		0.993533
894			33	66	1.0
1063		83		16	0.994512
1123			85	14	0.993533
1124	85			14	0.993533
1374	75		25		0.996473
1444	16		83		0.994512
1530	85		14		0.993533
1643	20			80	0.995493
1644		20	80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain