SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3859

Length: 907 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3859 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RVZ6_RICCO	-	-	0.0	71%
FL-Next	sp=Callose synthase 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Sma3	1,3-beta-glucan synthase	-	-	1.59047e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At1g05570; At1g06490; At2g13680; At2g31960; At2g36850; At3g07160; At3g14570; At3g59100; At4g03550; At4g04970; At5g13000; At5g36870; BGS1; CALS1; CALS10; CALS11; CALS12; CALS2; CALS3; CALS4; CALS5; CALS6; CALS7; CALS8; CALS9; CFL1; CalS3; CalS9; F12K11.17;

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	defense response by callose deposition	GO:0052542	Biological Process	-
Sma3	callose deposition in cell wall	GO:0052543	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR015706	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G03550.1	ATGSL05, GSL05, ATGSL5, PMR4, GSL5 glucan synthase-like 5 chr4:1573513-1579195 FORWARD LENGTH=1780	67%
RefSeq	Arabidopsis thaliana	NP_192264.1	callose synthase 12 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002330632.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZT82

Fln msg: Overlapping hits, possible frame ERROR between 289 and 240, Distance to subject end: 764 aas, your sequence is shorter than subject: 302 - 1780

Fln protein: RKICKNEYRRCAVIETYNNVKHLLQRIVKTDTEEHSIIVSVFEEIDASLSMEKFTEKYRMSELPQIHSKLITMVDILLTxxxxxxxxxxxxxxxxxxYEIAIRDFPKEKRNRDQLRQDGLVSQRSGSKLLFEDAVELPDVEDETFYRQLRRFRTILTSRDSMHNVPRNLEARRRIAFFSNSLFMNMPHAPQVDKMLAFSVLTPYYDEDVIYNKEQLRTSNEDGVSIIFYLQKIFPDEWGNFLERMHQKGIKEPELWTNHVRELRLWASYRGQTLARTVRGMMYYSNALKMLAFLDSASEMDI

Protein Length: 303

Fln nts: GAGAAAAATCTGCAAGAATGAGTACCGTCGTTGTGCAGTGATAGAAACGTATAACAATGTCAAGCATTTGCTTCAGAGAATTGTGAAGACAGATACCGAAGAGCACTCGATTATTGTTAGTGTGTTTGAAGAGATTGATGCATCACTTTCTATGGAGAAGTTTACAGAAAAATACAGAATGAGCGAGTTGCCTCAAATTCATTCTAAATTGATCACAATGGTTGACATTCTTCTGACAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGAAATTGCTATTAGAGATTTTCCAAAAGAGAAGCGGAATAGAGACCAACTGAGGCAAGATGGACTTGTTTCTCAAAGGAGTGGTAGTAAGCTGCTATTTGAGGATGCAGTAGAATTGCCCGATGTAGAAGACGAGACCTTTTATCGCCAGCTACGTCGCTTCCGCACCATCTTAACTTCTAGAGATTCCATGCATAATGTTCCAAGAAATCTGGAGGCAAGGCGACGGATTGCATTTTTCAGCAACTCTCTCTTTATGAACATGCCTCATGCACCACAGGTGGATAAGATGTTGGCGTTCAGTGTGTTGACTCCCTACTACGATGAGGATGTTATCTACAATAAAGAACAGCTGCGTACATCAAATGAAGATGGTGTTTCAATTATATTCTATCTCCAGAAGATATTTCCTGACGAATGGGGCAATTTCTTGGAGCGGATGCATCAGAAAGGAATAAAGGAACCTGAACTGTGGACCAATCATGTGAGAGAACTTCGGTTGTGGGCCTCATATAGAGGCCAGACACTGGCCCGCACTGTAAGGGGTATGATGTACTACAGCAATGCTTTAAAAATGTTGGCTTTTCTTGATTCAGCATCAGAGATGGATATCAG

Fln Alignment:

Contig3859___KICKNEYRRCAVIETYNNVKHLLQRIVKTDTEEHSIIVSVFEEIDASLSMEKFTEKYRMSELPQIHSKLITMVDILLTxxxxxxxxxxxxxxxxxYEIAIRDFPKEKRNRDQLRQDGLVSQRSGSKLLFEDAVELPDVEDETFYRQLRRFRTILTSRDSMHNVPRNLEARRRIAFFSNSLFMNMPHAPQVDKMLAFSVLTPYYDEDVIYNKEQLRTSNEDGVSIIFYLQKIFPDEWGNFLERMHQKGIK-EPELWTNHVRELRLWASYRGQTLARTVRGMMYYSNALKMLAFLDSASEMDI
Q9ZT82______________KICKNEYRRCAVVEAYDSIKHLLLSIIKVDTEEHSIITVFFQIINQSIQSEQFTKTFRVDLLPKIYETLQKLVG--LVxxxxxxxxxxxxxxxxxYEIATRQFFIEKKTTEQLSNEGLTPRDPASKLLFQNAIRLPDASNEDFYRQVRRLHTILTSRDSMHSVPVNLEARRRIAFFSNSLFMNMPHAPQVEKMMAFSVLTPYYSEEVVYSKEQLRNETEDGISTLYYLQTIYADEWKNFKERMHREGIKTDSELWTTKLRDLRLWASYRGQTLARTVRGMMYYYRALKMLAFLDSASEMDI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
170	33		66		0.997452
473	20			80	0.995493
474	80			20	0.995493
475	80		20		0.995493
476	80			20	0.995493
496	40		60		1.0
586		50		50	1.0
623		33	66		0.997452
624	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain