SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3838

Length: 1846 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3838

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	69%

Source	Gene names
Sma3	At5g08540; GSVIVT00002604001; OSIGBa0115K01-H0319F09.13; OSJNBa0038O10.22; Os04g0527800; OsI_16722; OsJ_15539; PHYPADRAFT_45363; POPTRDRAFT_567751; POPTRDRAFT_567752; RCOM_1454270; RCOM_1973670; VITISV_030897;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	G-patch domain	IPR000467	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08540.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; H	60%
RefSeq	Arabidopsis thaliana	NP_568200.1	uncharacterized protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002316427.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1J414

Fln msg:

Fln protein: MMNPMAMTSLNVQSMSSVLSGCPSYSGARAGPRSKTLHLGHTHFSIPSIPITSGFIHGYPFLQSNSWQGFNKVVARAKKQSEESVVQSSEKGKGAEEKPNVQEEEVEEEVELSWIQEKAEDLVEFTGAVTQVIPGPRVGHSSLPWMLAIPLAYMGLSLVVAVVKTIRKLNSPKEKRRRLVNQNARLCKTLDDFLQSKRHELNHAALKQLMSKTGFDMEDILRKYIRYSLNEKPFNPDLVAGLIHLRKSSMLDDASVAEVLNEVSRRIVKEKGPVVMNTSGFTEKGIKRKAAVQGLFSKLLYLSELDEFCSTTRSSLGIKEIFGVTDEDADALRIETLSEVSDVDSLENMVKLSSDSDSDSEEADTGTDKPQG*

Protein Length: 374

Fln nts: ATGCAAATTTCCTCACTCACTATGATACGATCGAACAAAACCCATGACAAAATGAGGCGAAATTATTTTCAGCGATATGTTTTCCTAAGAAATTTATCATAGACCAAGCAGTAGCCCGTCGGGCGTTATCGCGTATCGCTTGGCAGGCGAGGTGACGAAACAAATTCAACAAACCTATCGGATGACTCTGGATCAATGTAGGCAATGAACCGGGAGCCAGATATGAAGGGTGAACAAACATCGAGTTTTCGTCCACCTGTTACAGAAAGAAGAATTGATCAATTAACAAAGAAGACCAGTGAACCAGTAATGGCCACATAAGAATCACAGATTTAGCGTTATAACAATCAAGTAAGAGGTCTATGCATGGGAGGGAATTGTGTTTAGAAAGGTTTTT_-_ATGATGAATCCAATGGCAATGACATCATTGAATGTGCAATCCATGTCTTCGGTCCTTTCTGGCTGCCCTTCATATTCTGGTGCTAGGGCTGGACCTAGAAGCAAAACTCTGCATTTGGGTCATACGCATTTCAGTATTCCAAGCATTCCAATTACTTCTGGGTTCATTCATGGCTACCCATTTCTTCAAAGTAACAGTTGGCAGGGATTTAACAAGGTTGTGGCAAGAGCCAAGAAACAATCAGAAGAGAGTGTTGTGCAGTCTTCTGAGAAGGGGAAAGGTGCTGAAGAGAAGCCAAATGTTCAGGAGGAGGAAGTGGAAGAAGAGGTGGAGTTGTCATGGATACAGGAGAAGGCAGAGGACCTTGTAGAGTTCACGGGAGCTGTCACACAGGTCATTCCCGGACCCAGAGTGGGGCACAGTTCATTACCTTGGATGTTGGCTATACCATTGGCCTACATGGGCCTGTCATTAGTGGTAGCAGTAGTCAAGACCATCAGAAAGCTCAATTCTCCCAAAGAAAAGCGGCGCAGACTGGTGAACCAAAATGCAAGGTTGTGCAAGACTTTGGATGACTTTTTACAGTCCAAGCGACATGAGCTAAACCATGCAGCGTTGAAGCAGCTTATGAGCAAGACTGGTTTTGACATGGAAGATATTCTAAGAAAGTATATACGGTATTCTTTAAATGAGAAACCATTCAATCCTGATTTGGTAGCAGGCCTTATTCATCTCAGGAAATCTTCAATGCTAGACGATGCCAGTGTTGCAGAAGTTTTAAATGAGGTCTCTCGACGCATTGTAAAGGAAAAAGGTCCAGTTGTAATGAATACATCAGGTTTTACTGAGAAAGGGATCAAACGGAAGGCTGCTGTACAGGGACTTTTTAGTAAACTCCTTTATTTGTCAGAGCTTGATGAATTTTGTTCAACAACTCGGAGCTCTCTTGGCATTAAAGAAATCTTTGGCGTAACTGATGAGGATGCAGATGCTCTTAGGATTGAGACATTATCTGAGGTTTCTGATGTGGATTCACTTGAAAATATGGTAAAGTTGTCTTCGGACTCAGATTCAGATTCAGAGGAAGCTGATACAGGAACAGATAAACCACAGGGATGA___CTTCACTATAACGAGAAAAGATTTTTAGTTGAATGCTAATACTTAAGATGCAAAAATGAATCAGAAAAAAATTTAAAAATAGTTTGCGGAACAATTTTTTCAAAGTGAGGTTTCTAGCTATTGTAACAAGATGCGGAATATATAGGTGAGCTTATTTAAGAACTAAAGAATATTCCTGACTTTTGAATGGTGGTGATTCATTCGAGGCATATAACTATCATCTAAATCTGTAAGAGAAATATGCGTTCTCAATGTGGCTATAGCCGAAGAAGAAATTTTATAATTCTTCAAATTCAAAATAAAAAAATAAATAATCATTTTCCTTTGCAG

Fln Alignment:

Contig3838___LSWIQEKAEDLVEFTGAVTQVIPGPRVGHSSLPWMLAIPLAYMGLSLVVAVVKTIRKLNSPKEKRRRLVNQNARLCKTLDDFLQSKRHELNHAALKQLMSKTGFDMEDILRKYIRYSLNEKPFNPDLVAGLIHLRKSSMLDDASVAEVLNEVSRRIVKEKGPVVMNTSGFTEKGIKRKAAVQGLFSKLLYLSELDEFCSTTRSSLGIKEIFGVTDEDADALRIETLSEVSDVDSLENMV
I1J414______________LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSLPWILAIPLTYAGLTFVIAFVKTVRKFSSPKAKRRRQVSKNATLCKSLDDLFQKGRDEVKLDALKQIENKTGFDLEEILRKYIRYALNEKPFNPDMVADLIQLRKASMLNDSQVAEILNEISRRIVRDKGPIVMDKSGYTEKGFKRKIAVQALFGKVFYLSELPEFCSRD-SSLVVKEIFGVTDEDADKLRIHTISEAGSLDALEKMV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
976		20		80	0.995493
1089		55		44	1.0
1524	66			33	1.0
1538	60		40		1.0
1539			40	60	1.0
1556		20		80	0.995493
1567	60		40		1.0
1585	75		25		0.996473
1594	33			66	0.997452
1742	16	83			0.994512
1814		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain