SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3809

Length: 1437 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3809

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homeodomain protein HB2 [Populus tomentosa]	-	-	0.0	58%
FL-Next	sp=WUSCHEL-related homeobox 8; Oryza sativa subsp. japonica (Rice).	-	-	0.0	59%
Sma3	WUSCHEL-related homeobox 14	-	-	3.401e-08	-

Source	Gene names
Sma3	At1g20700; At1g20710; At4g35550; F2D10.19; F2D10.20; F8D20.60; GSVIVT00002895001; GSVIVT00008723001; GSVIVT00008725001; HB1; HB2; LOC_Os01g60270; Os01g0818400; OsI_04217; OsJ_03880; P0454H12.31; PALE2; PHYPADRAFT_7235; PHYPADRAFT_7275; PHYPADRAFT_91889; P

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35550.1	HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 chr4:16875814-16877167 REVERSE LENGTH=268	50%
RefSeq	Arabidopsis thaliana	NP_195280.1	WUSCHEL-related homeobox 13 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002306432.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5QMM3

Fln msg:

Fln protein: MTMEMNSPNIIADMQGIGLRGVGSQHPPSFTMQEQVMTEEQLETLRRQISVYATICRQLVHMHRAVVLQMDPMSGMPLGQAIAFDSLMGMAGQRVTARQRWTPSQVQLQILEKIFDQDKGTPSKQKIKEITAELSQHGHISETNVYNWFQNRRARTKRKQQIVTSNSGESEMDNSLDSSKGKQAKTDENIVQETQLLRQSSVAFQGHENVPKQQKDDTQQCRSAVSFSSQASSNALIDFAKNASFEQGFSETRNGQLMDFDKPMENSNTVSTGEGYIMIGNQAWLQSDPIKRFP*

Protein Length: 296

Fln nts: TTGAATTCAGACAGAGGACAGAAATAGTAATAGAAGAGCAGTTAAGACTGTTGTTCTCCCAGACTTCCAGCAACGAAGTTTTATTCGAGAATAAGCGGTGGAATTTTAAGCTGGGGGTATAAGGTTTTCGTGAAAAGGCATTTGATTGACACCCATGTGTTCCGAGTTATAGTCGTGTACATAGACTGCCCGCTTGTGTCTCAGGTGGAAAGTAGGGTGGGACTTTATGA_-_ATGACGATGGAGATGAATTCTCCAAATATAATAGCAGACATGCAGGGAATTGGTTTAAGGGGTGTGGGAAGCCAACATCCACCGAGTTTTACAATGCAGGAGCAGGTGATGACAGAGGAGCAGCTGGAGACTTTACGCCGACAGATATCGGTATATGCTACAATCTGTCGACAACTTGTGCACATGCATAGGGCCGTCGTACTGCAGATGGATCCGATGAGTGGGATGCCACTAGGGCAAGCAATTGCCTTCGATTCACTGATGGGTATGGCAGGCCAGAGGGTAACTGCTCGACAGCGTTGGACACCAAGCCAGGTGCAACTTCAGATTCTTGAGAAGATATTTGATCAGGATAAAGGAACCCCAAGTAAGCAAAAGATAAAAGAGATTACAGCTGAGCTTAGTCAACATGGTCATATTTCTGAGACAAATGTTTATAACTGGTTTCAAAATCGGAGAGCTCGAACCAAAAGGAAACAGCAAATTGTTACCTCCAACAGCGGGGAATCTGAAATGGATAATAGCCTTGACTCTTCAAAGGGAAAGCAAGCTAAAACGGATGAAAATATTGTTCAGGAAACTCAGTTATTGAGACAGAGTAGTGTTGCTTTTCAGGGTCATGAAAATGTTCCTAAACAGCAAAAAGATGATACTCAACAGTGCAGATCAGCAGTTTCTTTTAGTTCGCAAGCTAGTTCAAATGCTTTGATTGATTTTGCCAAAAATGCCTCTTTTGAGCAAGGCTTCTCTGAAACAAGAAATGGGCAATTAATGGATTTTGATAAACCTATGGAAAATAGCAATACAGTAAGTACTGGAGAGGGATACATTATGATAGGGAATCAAGCATGGTTGCAAAGTGATCCAATTAAAAGATTCCCCTAA___TGATTAAATATATCATATTATTACCAACATCTTTGAAGTAACTTTTCCTCCAAGGTGGAAGATAAAAGATAAATGATCTCTCCCCATTGAGAAATTGTAGTTGAGGATAATGTTGATAATAGCAATTCGTCAGGTTTCGAGGTAGAAACATTACTAAATATTTGGCCTTGCCATGTGTGTGTATTTTGAATAATCTCACATGGATAACAATGGTGGGACACGTGCTTTAAGAAGTACTATCCATTTCAAAATTTTTGTTTCAATATGTAAATTAATAAATTGATGGAAAAGTTTTTGAAGTGTATATTATTATAATGATTCC

Fln Alignment:

Contig3809___QVMTEEQLETLRRQISVYATICRQLVHMHRAVVLQMDPMSGMPLGQAIAFDSLMGMAGQRVTARQRWTPSQVQLQILEKIFDQDKGTPSKQKIKEITAELSQHGHISETNVYNWFQNRRARTKRKQQIVTSNSGESEMDNSLDSSKGKQAKTDENIVQETQLLRQSS
Q5QMM3______________KVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYC-DPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAMRDHNS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
446			66	33	1.0
738	14			85	0.993533
739	14	85			0.993533
743	85			14	0.993533
902	90	10			0.90298
903			88	11	0.923564
905			11	88	0.923564
906			11	88	0.923564
909			12	87	0.992554
911		12		87	0.992554
914		12		87	0.992554
918	12	87			0.992554
1055	50	50			1.0
1098	57		42		1.0
1112		66	33		1.0
1163		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain