SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3808

Length: 1650 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3808

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L7/L12, putative n=1 Tax=Ricinus communis RepID=B9S691_RICCO	-	-	2.0e-33	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	50S ribosomal protein L7/L12, putative	-	-	2.541e-12	-

Source	Gene names
Sma3	AT4g36420; At1g70190; At3g06040; At4g36420; C7A10.940; CHLREDRAFT_194556; F20P5.9; F24F17.2; GSVIVT00004198001; GSVIVT00008009001; GSVIVT00010577001; GSVIVT00016074001; GSVIVT00030132001; GSVIVT00036873001; LOC_Os03g52400; MICPUN_59041; MRPL7/L12; OJ1263_

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Ribosomal protein L7/L12, C-terminal	IPR013823	-	-
Sma3	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	IPR014719	-	-
Sma3	Ribosomal protein L7/L12, chloroplast	IPR015608	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36420.1	Ribosomal protein L12 family protein chr4:17203718-17204257 REVERSE LENGTH=179	2.0e-35	48%
RefSeq	Arabidopsis thaliana	NP_195360.1	Ribosomal protein L12 family protein [Arabidopsis thaliana]	2.0e-35	48%
RefSeq	Populus trichocarpa	XP_002310275.1	predicted protein, partial [Populus trichocarpa]	2.0e-38	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQH6

Fln msg:

Fln protein: MKLFGFGLTLSAHVLKPLYNDIRTICNASGEFVSNPLLVSRLNSSVTPNLNAKKFSTSAQEIPKEEGHVPSTEDMNPKPSERVYTLADDIAGLTLLEVSDLTDVLRNKFDIKEMPIMTMMMPGMGMPVMPGAGGKAGAAKVEEKQAKTFFDLKLESYDAASKIKIIKEVRTFTDLGLKEAKDLVEKTPALLKKGVTKEEGDTIIKKLKDLGAKVVME*

Protein Length: 219

Fln nts: AGGGTTTAACACGTACAAAACTTGCCTGTCACGCATTTTAAGCAACTATGAAAATAATTAAACCCATGACATTCACACATCTAAAGATTAAATTAGCAGATTTATTACCATTCCTGTTCAAGTGATCCAGCAATCGTTTCGAGAAAATCTCCAAGGGAAATGACGGACCTTATATCAAATTGCAGCTGATCAAGGCATGCTGTACAGGGCTTAAAGGCAGCTCAGC_-_ATGAAGCTGTTCGGTTTCGGCCTTACACTCTCAGCACACGTTCTCAAGCCACTGTATAATGACATCAGAACAATCTGCAATGCTTCAGGTGAGTTCGTTTCTAATCCACTGCTAGTCTCCCGTTTAAATTCTTCTGTCACCCCCAATCTCAATGCAAAGAAGTTCTCAACTTCTGCCCAAGAGATTCCCAAGGAAGAAGGCCATGTTCCTTCTACCGAGGACATGAACCCTAAACCTTCTGAGAGAGTCTATACGCTTGCGGACGACATTGCCGGCCTTACATTACTTGAAGTTTCCGACCTCACCGATGTACTCAGGAACAAGTTTGATATCAAGGAGATGCCCATCATGACCATGATGATGCCAGGAATGGGCATGCCTGTGATGCCGGGGGCCGGTGGCAAGGCGGGAGCAGCGAAAGTCGAAGAGAAACAGGCGAAGACCTTCTTTGATCTAAAGCTTGAAAGCTATGATGCGGCTTCCAAGATTAAGATTATCAAGGAAGTTAGGACATTTACTGATTTGGGTCTCAAGGAAGCAAAAGACTTGGTGGAGAAAACTCCTGCACTGTTGAAGAAGGGGGTTACGAAAGAAGAGGGTGACACCATTATTAAAAAATTGAAGGATTTGGGTGCTAAAGTTGTCATGGAGTAG___AATTTTTCCGTGCAGTTTGCGCAGGCTGACAGGAACAAGTCTCTTCAATTCTCTTTCAAAAGTGAGTTTTACTTCGTTTGATCAAGCTGAAATTTGAATTGTGCCCATTGCCATTATATTCTTGGGTCATTTCTGAATGGTATACTTTTAAGAATATGTTTCCTTCAGAGCTTCTTATCTAAGTACTCTTGCACAATTCTGTAGCATGTTTAAATTTACAGTGGACGATGCCCAAGATCGACAACAATGTTGTCATGGAAGCTTTATATCATCTCATTGATCGACTGCAGATTTATGCCTTTTTTTTGGTTTTATTTGAGACCTTACTTGGTTTACAGGACCTCTTCACTCAGAATCGAAATAAAAATCAAAACAGAAAGTTATTTGCAACTTCTTTGATGACAGGAATCTTAATCCTGTTTGTCTTCGGTTACTTCTAAATGTTGGATTGGTGTCATTTGTGATCAAAGTAGGGAAAATTTTCAAAATCCAATTTTACTACTAATTGGTAGACTGAGATGTCTTCTAAACTTACAGTGATTGATTTACTTTCTGAACTGTACTTTGGCAACAAACATGTGCTGTTGCATGGAACTTTCTTCTGTTGTATTAGTCTCGACAGTAAGACTGCCATCCTTGCCTAATGGTGGCCTCAAGAAAGCGAAGTTTTAGGTGACTATGGGTGCATTTATGAAAGCACGAGATTCTGTCAGTTTGTTGAGGAGTTCTTCTCATGATTTTGAAATGCAAAGAGTCAGTCGGAAATTTTC

Fln Alignment:

Contig3808___QAKTFFDLKLESYDAASKIKIIKEVRTFTDLGLKEAKDLVEKTPALLKKGVTKEEGDTIIKKLKDLGAKVVM
A9NQH6______________EEKTEFDVVIDEVPSNARIAVIKVIRSLTSLALKEAKDLIEGLPKKFKEGAGKEEAEEAKKKLEEVGAKVTI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
73		28		71	1.0
84	90	10			0.90298
85	90		10		0.90298
86	90			10	0.90298
87		10	90		0.90298
88	90		10		0.90298
90			10	90	0.90298
92	90	10			0.90298
93	90	10			0.90298
117	16		83		0.999991
346		77	22		0.999999
395	50			50	1.0
507	90	10			0.90298
684	90		10		0.90298
840	85	14			0.993533
869		10		90	0.90298
998		11		88	1.0
1179		72		27	1.0
1180		60		40	1.0
1569	20			80	0.995493
1571			20	80	0.995493
1572	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain