SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3806

Length: 1378 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3806

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative tyrosine decarboxylase [Arabidopsis thaliana]	-	-	0.0	63%
FL-Next	sp=Tyrosine decarboxylase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Tryptophan decarboxylase	-	-	3.131e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	Tyrosine decarboxylase.	EC:4.1.1.25	-	1.762e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tyrosine metabolism	00350		1.762e-21	%
Sma3	Isoquinoline alkaloid biosynthesis	00950		1.762e-21	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		1.762e-21	%
Sma3	Metabolic pathways	01100		1.762e-21	%
Sma3	Biosynthesis of secondary metabolites	01110		1.762e-21	%
Sma3	Aromatic-L-amino-acid decarboxylase.	EC:4.1.1.28	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Histidine metabolism	00340	%
Sma3	Tyrosine metabolism	00350	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Tryptophan metabolism	00380	%
Sma3	Indole alkaloid biosynthesis	00901	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	%
Sma3	Betalain biosynthesis	00965	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AADC; At2g20340; At4g28680; CHLREDRAFT_116869; DDC1; ELI5; F11A3.11; GSVIVT00007643001; GSVIVT00007644001; GSVIVT00011265001; GSVIVT00028364001; GSVIVT00028367001; GSVIVT00028492001; GSVIVT00029216001; LOC_Os10g23900; LOC_Os10g26110; OJ1005_B11.5; OJ1368_

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	aromatic-L-amino-acid decarboxylase activity	GO:0004058	Molecular Function	-
Sma3	tyrosine decarboxylase activity	GO:0004837	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	carboxy-lyase activity	GO:0016831	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3		GO:0006519	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	carboxylic acid metabolic process	GO:0019752	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Aromatic-L-amino-acid decarboxylase	IPR010977	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein chr2:8779804-8782490 FORWARD LENGTH=490	67%
RefSeq	Arabidopsis thaliana	NP_849999.1	Tyrosine decarboxylase 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002301839.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RY79

Fln msg: your sequence is shorter than subject: 376 - 490

Fln protein: TELEAIVLDWLGKIINLPEAFLLSGKGGGVIQGTASEAILVALLAARDKALKAMHVGSLENLVVYGSDQTHSSLEKACMIAGIQKKNFKALPTNSYMNYELSPEVLKKAISDDLSAGLYPFFLCATVGTTSSTAVDPLMELGKISQDHGMWLHVDAAYAGSACICPEYRHCLDGVELADSFNMNAHKWLLTNFDCSALWVKDSNALVEALSTNPEYLRNKASESNTVVDYKDWQIPLGRRFRSLKLWMVLRLYGVTNLRTYIRNHIDLAKHFEELVRGDAKFEIMAPRIFALVCFRLLPPSDDPDNDNGYTLNSRLLEAVNNSGHIFLSHTVLSNTFTLRFVVGAPLTEQQHVSAAWKILQDQAVILLKSYEFSK*

Protein Length: 377

Fln nts: ACAGAGCTTGAAGCCATAGTTCTAGACTGGCTGGGAAAAATTATAAATCTTCCTGAGGCTTTTCTGTTATCTGGAAAAGGTGGTGGTGTAATTCAAGGTACCGCAAGTGAAGCTATTCTGGTTGCATTATTAGCTGCACGAGACAAAGCATTGAAGGCTATGCACGTGGGATCACTTGAAAATCTTGTTGTATATGGTTCAGATCAAACACACTCTTCATTGGAAAAGGCTTGTATGATTGCTGGAATACAAAAGAAAAATTTCAAGGCATTGCCGACAAACTCTTATATGAATTATGAACTTTCTCCTGAAGTTCTCAAAAAAGCGATATCAGATGATTTATCAGCTGGGCTTTACCCATTTTTTTTATGTGCAACAGTTGGTACAACATCATCAACAGCTGTAGATCCTTTAATGGAGCTTGGAAAAATATCTCAGGATCATGGCATGTGGCTTCATGTTGATGCTGCATATGCTGGTAGTGCTTGTATTTGTCCTGAATATCGGCACTGTCTTGATGGCGTGGAGTTGGCAGACTCTTTTAATATGAATGCTCATAAGTGGCTTCTTACAAATTTTGATTGTTCTGCACTGTGGGTAAAGGATTCCAATGCATTGGTTGAAGCTCTCTCTACGAATCCAGAATATTTGAGGAACAAGGCTTCTGAATCAAACACAGTGGTTGATTATAAAGATTGGCAAATCCCACTTGGTCGTCGCTTTAGGTCTTTAAAGTTATGGATGGTTTTACGATTGTATGGTGTTACAAATTTACGGACCTATATAAGAAATCATATTGATCTTGCTAAACATTTTGAGGAACTTGTCAGAGGAGATGCCAAATTTGAGATTATGGCACCTCGCATTTTTGCTTTGGTGTGTTTTCGACTTTTACCTCCCTCGGATGATCCAGATAATGATAACGGGTACACATTGAATTCACGATTGTTGGAGGCTGTAAACAATAGTGGACACATTTTTCTATCACATACGGTTCTTTCCAATACATTCACTCTGCGTTTTGTTGTGGGTGCGCCATTAACTGAACAACAGCATGTCAGTGCTGCATGGAAAATACTTCAAGATCAGGCGGTCATTCTTCTAAAGAGTTACGAATTCTCCAAATGA___TTATGTTACTACACGACTTTTTGATTTTCTAAATTTATGGATTCAAATCAAATTCTTTAGTGACATATTTATTTTCATGAATGATGATGGGATTGCATATTTATAGTTCACATTTCTGTTTCCACCATAAGTTTATACGGTATTAGCAAGTATTTGGATCACATGCAAATCTGCCTTCCACGAATACCTTGCTATATGTACTGGAAGTTGAAACAAAACTAAAACACGCATCAATTTTACTGAGTCATGT

Fln Alignment:

Contig3806___TELEAIVLDWLGKIINLPEAFLLSGKGGGVIQGTASEAIXXXXXXXXXXXXXXMHVGSLENLVVYGSDQTHSSLEKACMIAGIQKKNFKALPTNSYMNYELSPEVLKKAISDDLSAGLYPFFLCATVGTTSSTAVDPLMELGKISQDHGMWLHVDAAYAGSACICPEYRHCLDGVELADSFNMNAHKWLLTNFDCSALWVKDSNALVEALSTNPEYLRNKASESNTVVDYKDWQIPLGRRFRSLKLWMVLRLYGVTNLRTYIRNHIDLAKHFEELVRGDAKFEIMAPRIFALVCFRLLXXXXXXXXXXGYTLNSRLLEAVNNSGHIFLSHTVLSNTFTLRFVVGAPLTEQQHVSAAWKILQDQAVILL
Q8RY79______________TELEMIVLDWVAKLLNLPEQFMSKGNGGGVIQGSASEAVLVVLIAARDKVLRSVGKNALEKLVVYSSDQTHSALQKACQIAGIHPENCRVLTTDSSTNYALRPESLQEAVSRDLEAGLIPFFLCANVGTTSSTAVDPLAALGKIANSNGIWFHVDAAYAGSACICPEYRQYIDGVETADSFNMNAHKWFLTNFDCSLLWVKDQDSLTLALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMVLRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVPVKDEEKKCN--NRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEEASYLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain