SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3799

Length: 2901 nt

UniGene Fasta

>sp_v3.0_unigene3799
GGAAAAAATCAACACCTACCAGGTTAACGCCCCCTCAGATTTGCAATGCAAAAGACACCTTATCTATGGAGGACGAAGATGTCGATGACCGACTTTATTTAGTTAACAGGGTTACCGCAGAATCAGCATATTACTTAAAATTACGTCAAACTCAACTCGACTCTGAAATTGACGGCAATTCTCAAAGTTAAGACTCCCTCACAGGGAGGGGCGCCCAGGCGTGTTGAGAAAGGAAGGAGAATTATGAGCGAGAAAGTCAAGTATTCAAAAACAGTTGAGTGGATGATGTAGAAAACCCCACCAATGCCGATACCTATACTCGTACCCCTGCAACATGCAGCAGCTCTGAACCCCTTTATAACAAATACTATGGATCTAATGTTGTGTAAATTATTGTCCTTGTAGATCGCCATTCTGAATAGGCGATATCGTGAAAGAATTTGCATGCGATTTTATCATATACATTTTGTTGGCTTACCCAACGACCAAAATTTTGCTATTTGATGCTGTGAATGTTGAATTATGAACAAGGCTGGTTCCGTAGCGTTATTCGGCTATGTGAAGAAATGTGATCGAGCACGAGAGAGTGTGTAGGCAGGGTCGGGGGTATTAAATTTTATTTTTTTCTAAGATAAACAGGGGAGCCATGGCGGAGTCTATCTGTGAAAAGAGAGAGGTAAAAGAAAATCTCGGTTGGATTTATGTGCGGAGCAATTCGGATTGGAAGCGACGTTATGCCATGATTTTGAAGGGAAACCTGCAAATATTTTCTTCCGATAAAAAAGATCGTGTAAAGAAGGTTGTGAAAATTGAGGGATCACGAGTATTTATTGTGGGACCATCCTCATCACCAAACTCGGTGGGGGAATCTGCTGTTTCTCAACAATGGGAAAAGCTACTGAGGCAGCCTTTCCCTGATGAGTGCTATTCTCGTGAAACGTCTCTATTAGTTATTGAACCAAAGAAGGGGAAACCTTGCTGCCTGTTGGCTATGAACCAGAAAGAGGCTAATAGTTGGAAAGTGACCATAGAAGAAGCTGAATCTGCCTTGTTAAAGGCACCTGAACGACTGCCCACTAAGTCTTCCAGTCGACAAGGACCAAATGCTATCATGTTAAGAGCAACCTCAGCAATGAGAAGGTCGTTTCGTTCAAATAAGAAAGTTGATGCATGCAGAAAAGAGGCATCTGGAAATCCAAAGGGTAATTCTGAAATAAAGTATAGTGAACTAATAAATACAGACATACAACGTTTGGATCCACTATGGCCAGATCTTGACACACTTCAAGGTTGCACTGATTTTCTGAGGTCCAACTATCGCCATGCACATGCTCTTGAGAATGCAAAGCTCATGGTTGATTATTTTAAAGGTTGCTATCAAATGGGTGACTCTTCATTGTCTGATGAGTTTCGGCTGGAAGCTTGGAAGGGTACAATGCGAAGAATCGTCAAGGCGCTAGTTGATCAACTTGTAACGTCCAATCCTTCTCTGGAGTCCTGCATGGTCAATGAAGAGAAAATGGATCAGCTTTGGTTAGCATGTGAAACTTGGATATTTGGAGCTGTACATGATAAAATCATGGGTGCATGCAAGCAGATGTTTGCCTTAAAAGACAAAGTGCTAGATGAAACACTAGCAAGGCTTCAGAAGGTAGATCCTTTGGCATTAGGTGTTCGAGGAGAATTTGAAAACTTTGTTTTGGGAGATGCTTTGTACCAGTTCAAACAAATAAACAGATTCAAAACACCTCTTGAAAAGGCCACTTGCTTACGGAAGACTGTTAATTCTATACTGCAAGGCATTCAAAGTGTGGTAAAGTCGAGCACAACAACATATCAGGATATTGGCGTGTTGCCTTGCACAGATGACCTCCTATCTTTTATGGTTCTCTTGATGGTTCGTGCAAAGGTCCAAAATTTGCAGGCCAATGCTTCATATATGGAAAATTTTATGTACATAAACAAAGAAGATGGTGATAAGGGTGAACTTGGATTCCACATGACAAATTTTGTTGCAGCATGCAATTATCTGCAATCAAAAGAAATTAAAGATATTGTAATTCAGGCTCCACCAAAGAGCGGACGTGTATCTTGTTCCTTTGGGTTGCCAGCATCTGCTGTACATGATGTAAATGTAAATATAAATGTAGGGGAGGATAACAGTAATCACAGAGGGAGAGTTTGCAGGATTCATGATGCCAAACAATGGGACGAATCTTTGCTGTCATCTAGAAAAGTTGGCCTGAGCTTTCCTGGAGAATCTCCTGATTTTTTGTTGGCCTCGACATACCAATGAAGTGGCTGTATATGAACATCTTCTTTAACTAGCAAAGGTTATGTTCCAGGTTATTTTATTTTCCTTAACATCATCATTAAATATTAGTGTGTGTAAAGAAAGAGGAAATGCAATATTGCCAGTGTAAGCGGGGCAATATAATGATATATTGGAGAACTTAAAGGTTTTGATCCTAAATTCATCCCTTAATTAGCTCTCTGAAGAAAGAGTTTCTTATATCAGCCCCTTTGTTTTATCATATAAACTCATCATAATGAGGAGGGGTTTGAGAATGAGGTTAAACAAAATGGCTTCTGTATATGGAATCATCAGGTATATTTTATTTATACAAGGAAACCTTGATCAGAGCACTGCTTATTTATGTTTGAGTGGGCATATCCATCCGTGTCATAGCACATAAAATTTGCATACACAAGACACATGATTTTCATGGAATCATGGACAGTTATCTGTGCTAGAGTGGTGTGTTTGTGTGCCAATCTAACATACAAACTAAGATATAATATATATTGATTCTAAGTTGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGGATAAAACCACTATCCAAAAGAGTACAGTTATTAGAATTTTTTG

Ace file of the UniGene sp_v3.0_unigene3799

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin repeat domain-containing protein 27 [Gallus gallus]	-	-	2.0e-14	30%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	50%

Source	Gene names
Sma3	PHYPADRAFT_160860; PHYPADRAFT_166292; PHYPADRAFT_80930; PHYPADRAFT_94702;

Source	InterPros	Term	Type	e value	Identity
Sma3	Vacuolar sorting protein 9	IPR003123	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9RTA2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 550 - 644

Fln protein: MAESICEKREVKENLGWIYVRSNSDWKRRYAMILKGNLQIFSSDKKDRVKKVVKIEGSRVFIVGPSSSPNSVGESAVSQQWEKLLRQPFPDECYSRETSLLVIEPKKGKPCCLLAMNQKEANSWKVTIEEAESALLKAPERLPTKSSSRQGPNAIMLRATSAMRRSFRSNKKVDACRKEASGNPKGNSEIKYSELINTDIQRLDPLWPDLDTLQGCTDFLRSNYRHAHALENAKLMVDYFKGCYQMGDSSLSDEFRLEAWKGTMRRIVKALVDQLVTSNPSLESCMVNEEKMDQLWLACETWIFGAVHDKIMGACKQMFALKDKVLDETLARLQKVDPLALGVRGEFENFVLGDALYQFKQINRFKTPLEKATCLRKTVNSILQGIQSVVKSSTTTYQDIGVLPCTDDLLSFMVLLMVRAKVQNLQANASYMENFMYINKEDGDKGELGFHMTNFVAACNYLQSKEIKDIVIQAPPKSGRVSCSFGLPASAVHDVNVNINVGEDNSNHRGRVCRIHDAKQWDESLLSSRKVGLSFPGESPDFLLASTYQ*

Protein Length: 551

Fln nts: GGAAAAAATCAACACCTACCAGGTTAACGCCCCCTCAGATTTGCAATGCAAAAGACACCTTATCTATGGAGGACGAAGATGTCGATGACCGACTTTATTTAGTTAACAGGGTTACCGCAGAATCAGCATATTACTTAAAATTACGTCAAACTCAACTCGACTCTGAAATTGACGGCAATTCTCAAAGTTAAGACTCCCTCACAGGGAGGGGCGCCCAGGCGTGTTGAGAAAGGAAGGAGAATTATGAGCGAGAAAGTCAAGTATTCAAAAACAGTTGAGTGGATGATGTAGAAAACCCCACCAATGCCGATACCTATACTCGTACCCCTGCAACATGCAGCAGCTCTGAACCCCTTTATAACAAATACTATGGATCTAATGTTGTGTAAATTATTGTCCTTGTAGATCGCCATTCTGAATAGGCGATATCGTGAAAGAATTTGCATGCGATTTTATCATATACATTTTGTTGGCTTACCCAACGACCAAAATTTTGCTATTTGATGCTGTGAATGTTGAATTATGAACAAGGCTGGTTCCGTAGCGTTATTCGGCTATGTGAAGAAATGTGATCGAGCACGAGAGAGTGTGTAGGCAGGGTCGGGGGTATTAAATTTTATTTTTTTCTAAGATAAACAGGGGAGCC_-_ATGGCGGAGTCTATCTGTGAAAAGAGAGAGGTAAAAGAAAATCTCGGTTGGATTTATGTGCGGAGCAATTCGGATTGGAAGCGACGTTATGCCATGATTTTGAAGGGAAACCTGCAAATATTTTCTTCCGATAAAAAAGATCGTGTAAAGAAGGTTGTGAAAATTGAGGGATCACGAGTATTTATTGTGGGACCATCCTCATCACCAAACTCGGTGGGGGAATCTGCTGTTTCTCAACAATGGGAAAAGCTACTGAGGCAGCCTTTCCCTGATGAGTGCTATTCTCGTGAAACGTCTCTATTAGTTATTGAACCAAAGAAGGGGAAACCTTGCTGCCTGTTGGCTATGAACCAGAAAGAGGCTAATAGTTGGAAAGTGACCATAGAAGAAGCTGAATCTGCCTTGTTAAAGGCACCTGAACGACTGCCCACTAAGTCTTCCAGTCGACAAGGACCAAATGCTATCATGTTAAGAGCAACCTCAGCAATGAGAAGGTCGTTTCGTTCAAATAAGAAAGTTGATGCATGCAGAAAAGAGGCATCTGGAAATCCAAAGGGTAATTCTGAAATAAAGTATAGTGAACTAATAAATACAGACATACAACGTTTGGATCCACTATGGCCAGATCTTGACACACTTCAAGGTTGCACTGATTTTCTGAGGTCCAACTATCGCCATGCACATGCTCTTGAGAATGCAAAGCTCATGGTTGATTATTTTAAAGGTTGCTATCAAATGGGTGACTCTTCATTGTCTGATGAGTTTCGGCTGGAAGCTTGGAAGGGTACAATGCGAAGAATCGTCAAGGCGCTAGTTGATCAACTTGTAACGTCCAATCCTTCTCTGGAGTCCTGCATGGTCAATGAAGAGAAAATGGATCAGCTTTGGTTAGCATGTGAAACTTGGATATTTGGAGCTGTACATGATAAAATCATGGGTGCATGCAAGCAGATGTTTGCCTTAAAAGACAAAGTGCTAGATGAAACACTAGCAAGGCTTCAGAAGGTAGATCCTTTGGCATTAGGTGTTCGAGGAGAATTTGAAAACTTTGTTTTGGGAGATGCTTTGTACCAGTTCAAACAAATAAACAGATTCAAAACACCTCTTGAAAAGGCCACTTGCTTACGGAAGACTGTTAATTCTATACTGCAAGGCATTCAAAGTGTGGTAAAGTCGAGCACAACAACATATCAGGATATTGGCGTGTTGCCTTGCACAGATGACCTCCTATCTTTTATGGTTCTCTTGATGGTTCGTGCAAAGGTCCAAAATTTGCAGGCCAATGCTTCATATATGGAAAATTTTATGTACATAAACAAAGAAGATGGTGATAAGGGTGAACTTGGATTCCACATGACAAATTTTGTTGCAGCATGCAATTATCTGCAATCAAAAGAAATTAAAGATATTGTAATTCAGGCTCCACCAAAGAGCGGACGTGTATCTTGTTCCTTTGGGTTGCCAGCATCTGCTGTACATGATGTAAATGTAAATATAAATGTAGGGGAGGATAACAGTAATCACAGAGGGAGAGTTTGCAGGATTCATGATGCCAAACAATGGGACGAATCTTTGCTGTCATCTAGAAAAGTTGGCCTGAGCTTTCCTGGAGAATCTCCTGATTTTTTGTTGGCCTCGACATACCAATGAAGTGGCTGTATATGAACATCTTCTTTAACTAGCAAAGGTTATGTTCCAGGTTATTTTATTTTCCTTAACATCATCATTAAATATTAGTGTGTGTAAAGAAAGAGGAAATGCAATATTGCCAGTGTAAGCGGGGCAATATAATGATATATTGGAGAACTTAAAGGTTTTGATCCTAAATTCATCCCTTAATTAGCTCTCTGAAGAAAGAGTTTCTTATATCAGCCCCTTTGTTTTATCATATAAACTCATCATAATGAGGAGGGGTTTGAGAATGAGGTTAAACAAAATGGCTTCTGTATATGGAATCATCAGGTATATTTTATTTATACAAGGAAACCTTGATCAGAGCACTGCTTATTTATGTTTGAGTGGGCATATCCATCCGTGTCATAGCACATAAAATTTGCATACACAAGACACATGATTTTCATGGAATCATGGACAGTTATCTGTGCTAGAGTGGTGTGTTTGTGTGCCAATCTAACATACAAACTAAGATATAATATATATTGATTCTAAGTTGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGGATAAAACCACTATCCAAAAGAGTACAGTTATTAGAATTTTTTG

Fln Alignment:

Contig3799___TKSSSRQGPNAIMLRATSAMRRSFRSNKKVDACRKEASGNPKGNSEIKYSELINTDIQRLDPLWPDLDTLQGCTDFLRSNYRHAHALENAKLMVDYFKGCYQMGDSSLSDEFRLEAWKGTMRRIVKALVDQLVTSNPSLES-CMVNEEKMDQLWLACETWIFGAVHDKIMGACKQMFALKDKVLDETLARLQKVDPLALGVRGEFENFVLGDALYQFKQINRFKTPLEKATCLRKTVNSILQGIQSVVKS-STTTYQDIGVLPCTDDLLSFMVLLMVRAKVQNLQANASYMENFMYINKEDGDKGELGFHMTNFVAACNYLQSKEIKDIV--IQAPPKSGRVSCSFGLPAS
A9RTA2______________SKSESQHGATGVSGVKARIQLRLLSQLKWEAYCPKKLKGEKPGKGAGRQEPLAVAK-----DLWSGLDTFQGCTDFLQSSGLNTRALRHAARMVDHFKSSYQIEDSSLSNEFRIAACKETLRQIAKSLVDQTLASNPRLESYCIGNEENMSQLRSACETWVLGSVYEKVLGACKLMFGQSDKILDYNLARLDKVDPIVLGVRSEFKDFVLGEALLQFRMINRGRTPLEKAICLQKTINCIIEGIQTVISSCSGTTAEKDGLLPCTDDLLSFMLLLMARSRVKNLQANACYMDNFLSLQAENEQSGELAYHVTNFMAACNYLNSLEVEKLVASVSAPSTAEKIPASLKSPRS

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
1373		25	75		0.996473
1374	25			75	0.996473
1375	25			75	0.996473
1376		25	75		0.996473
1379	75			25	0.996473
1381	25	75			0.996473
1386	20		80		0.995493
1398	80	20			0.995493
1834	66		33		0.997452
1835	14	85			0.993533
1838	85		14		0.993533
1994	14		85		0.993533
1995		14	85		0.993533
1996	71		28		1.0
2102		12		87	0.992554
2107	12		87		0.992554
2186		11		88	0.923564
2188		88		11	0.923564
2189	88	11			0.923564
2193		11		88	0.923564
2196	88			11	0.923564
2199	88		11		0.923564
2202		88		11	0.923564
2205	88	11			0.923564
2206	88			11	0.923564
2212		10	90		0.90298
2214	90			10	0.90298
2217	90			10	0.90298
2220		10		90	0.90298
2224			10	90	0.90298
2243		18		81	0.999994
2281	11			88	0.923564
2317	11	88			0.923564
2332	11		88		0.923564
2333		88	11		0.923564
2375	33	66			1.0
2438	81		18		0.999994
2538	85		14		0.993533
2616		12		87	0.992554
2828	33	66			0.997452
2829	33	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain