SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3796

Length: 2124 nt

UniGene Fasta

>sp_v3.0_unigene3796
ATATTAATGGAGGCCTTAAGCTGGATATGCCATCCTCAAGTTGTTCATGGTTTTTTTGGTTTGGGGTTCTGAATTCATAGAAGCTTAAGGTCTCTGTAAGACTGTGAATCCATTCTCAGTTAAAAAGTTCAGCTGTTATAGCTTCACTGCATTAGGGATTTTGCGTATCTGAAGGCTAGTAAGGCCAAATTTCTGCAACTGCAACTCTGTTTTCTCAGTTTTTCACAAAACATAAGAACTGAAAACTTGGACTGAATCCATAGTGTTGATTTATAGCAATGGAGGGAACAATACTGCCATGCAGACGATCCCATGAGGATGATGGGGCCGAATTCTCCAAGAAACACAAAGCTATGAAGAAATGGGTTGATCCAGCCCAAGGCCTGGCTAATGCCCGCCATGAGTTTGGCGAGCATGGAGGTGTGAACATGTCCATAGAAGCCTCGGCTACCTTTACAGTTATGGAGCCTGAGACCATGAGAAGGATGTTCAGTGGGGAGCTTGGCCCAGAACGTGATTTCTTCATATACAGCAGGCATTTCAATCCTACTGTTCTCAATTTGGGCAGGCAGATGGCTGCTTTGGAGGGGACTGAAGCTGCCTACTGTACTTCCAGTGGTATGTCTGCAATATCTTCTGTTTTATTACAGTTGTGTAGCCATGGAGACCATGTTGTGGCCTCTAGGTGTCTGTATGGAGGCACCCATGCATTGTTGGCACATTTTCTGCCAAGGGCCTGTGGGGTTTCAACATCTTTTGTTGATATCCAGAGGCTTGATGATGTGAAAAATGCCATAACACCATCTACCAAGGTTTTGTATTTTGAATCTGTCTCAAATCCAACTCTGGCAGTTGCAGACATCCCATCTCTGTCTGCCATTGCTCATGAGAAAAATGTCAAGGTGGTGGTTGATAATACCTTTTCTCCCATGATCATATCCCCTGCAAAGCTTGGTGCTGATGTTGTTATTCACAGCATTTCAAAATATATCAGTGGAGGTGCTGATGTTATAGCAGGAGCAATATGTGGGCCTGCAGATCTGATAAATTCCATGATGGATCTCCATCAGGGAACCTTGATGCTCTTGGGGCCAACCATGAATGCAAAAGTGGCATTTGAGATCTCTGAGAGGCTCCCCCACTTGGGATTGAGGATGAAGGAGCACTGTCACAGAGCATATACCTATGCAACCAGGATGAAGAAATTGGGAATGAAAGTTATATATCCTGGCCTAGAAGATCACCCTCAGTATGCCCTTTTGAAGACCATTGTTAACAGTGGGTATGGTTATGGTGGGATTCTGTGTGTGGACATGGAGACTGAGGAGAGGGCCAACAAGCTCATGAACCACCTGCAGAATCATACCCAGTTTGGGCTGATGGCGGTGAGCTTGGGGTACTATGAAACGTTGATGTCATGCTCTGGCAGCAGCACTAGCAGTGAGATGAATGAGGAGGAAAAGGATTTGGCTGGGATCTCGCCAGGTCTGATAAGGATGTCGATTGGTTACAGTGGGACTCTTGAGCAGAGATGGAGCCAATTTGAGGATGCCCTCTCCAGGATGTCTCAAGTCCTGCCTTTTTAAACGCTGGGATTGATGCAGATCCAACACTTCGTTTTCTATTTATTATCATAGCTAGTCTGTAAGAGGTGTACTGTAACACTTCTATGTTTTTTATATGCATATATGTATTTCTTCCCCTGATCTGCTATGCTGGAACTACAGATTGCATGCAACTGTTGAAAAATGGTGTGATAATTGCAAGACATAATTTGTCTATTTGAAAGACGGTGTGATAATTGCACGACCTAATTTGGCTTTTTAAAAATCTCTGTACAAATCTGATCAGTCAGAGTGGGCACAAATATGCTATCTCAGAGAGAAGGTACAGAGGAAAATGTGCTGTGGATGGAAATATAAGTAATAGCTGGCATTGTATCATGATATATTTGATCCCAACGATCCCATTTTTAAAAAGTTCAATGCTGAAGCATATTATATGTGCTGATATAAGTTTTTTACTGGTTTGTTTCTGGAATTTGATTTTTGAATATTTACTTTGTGATTCCTGAACATACTGAATAATATCTGTTTACATTTCGTGAAGTGTAGTTAGTTTTTG

Ace file of the UniGene sp_v3.0_unigene3796

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cystathionine gamma-synthase, putative n=1 Tax=Ricinus communis RepID=B9RYU1_RICCO	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	At1g64660; At1g64660/F1N19.23; GSVIVT00000520001; LOC_Os10g37340; OSJNBa0076F20.6; Os10g0517500; OsI_34329; OsJ_32167; PHYPADRAFT_201470; PHYPADRAFT_207198; PHYPADRAFT_69820; POPTRDRAFT_555143; POPTRDRAFT_555144; POPTRDRAFT_582844; POPTRDRAFT_709036; POPT

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	methionine gamma-lyase activity	GO:0018826	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	methionine catabolic process via 2-oxobutanoate	GO:0019458	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G64660.1	ATMGL, MGL methionine gamma-lyase chr1:24028977-24030537 FORWARD LENGTH=441	73%
RefSeq	Arabidopsis thaliana	NP_176647.1	methionine gamma-lyase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002299428.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2J0

Fln msg:

Fln protein: MEGTILPCRRSHEDDGAEFSKKHKAMKKWVDPAQGLANARHEFGEHGGVNMSIEASATFTVMEPETMRRMFSGELGPERDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLLQLCSHGDHVVASRCLYGGTHALLAHFLPRACGVSTSFVDIQRLDDVKNAITPSTKVLYFESVSNPTLAVADIPSLSAIAHEKNVKVVVDNTFSPMIISPAKLGADVVIHSISKYISGGADVIAGAICGPADLINSMMDLHQGTLMLLGPTMNAKVAFEISERLPHLGLRMKEHCHRAYTYATRMKKLGMKVIYPGLEDHPQYALLKTIVNSGYGYGGILCVDMETEERANKLMNHLQNHTQFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKDLAGISPGLIRMSIGYSGTLEQRWSQFEDALSRMSQVLPF*

Protein Length: 437

Fln nts: ATATTAATGGAGGCCTTAAGCTGGATATGCCATCCTCAAGTTGTTCATGGTTTTTTTGGTTTGGGGTTCTGAATTCATAGAAGCTTAAGGTCTCTGTAAGACTGTGAATCCATTCTCAGTTAAAAAGTTCAGCTGTTATAGCTTCACTGCATTAGGGATTTTGCGTATCTGAAGGCTAGTAAGGCCAAATTTCTGCAACTGCAACTCTGTTTTCTCAGTTTTTCACAAAACATAAGAACTGAAAACTTGGACTGAATCCATAGTGTTGATTTATAGCA_-_ATGGAGGGAACAATACTGCCATGCAGACGATCCCATGAGGATGATGGGGCCGAATTCTCCAAGAAACACAAAGCTATGAAGAAATGGGTTGATCCAGCCCAAGGCCTGGCTAATGCCCGCCATGAGTTTGGCGAGCATGGAGGTGTGAACATGTCCATAGAAGCCTCGGCTACCTTTACAGTTATGGAGCCTGAGACCATGAGAAGGATGTTCAGTGGGGAGCTTGGCCCAGAACGTGATTTCTTCATATACAGCAGGCATTTCAATCCTACTGTTCTCAATTTGGGCAGGCAGATGGCTGCTTTGGAGGGGACTGAAGCTGCCTACTGTACTTCCAGTGGTATGTCTGCAATATCTTCTGTTTTATTACAGTTGTGTAGCCATGGAGACCATGTTGTGGCCTCTAGGTGTCTGTATGGAGGCACCCATGCATTGTTGGCACATTTTCTGCCAAGGGCCTGTGGGGTTTCAACATCTTTTGTTGATATCCAGAGGCTTGATGATGTGAAAAATGCCATAACACCATCTACCAAGGTTTTGTATTTTGAATCTGTCTCAAATCCAACTCTGGCAGTTGCAGACATCCCATCTCTGTCTGCCATTGCTCATGAGAAAAATGTCAAGGTGGTGGTTGATAATACCTTTTCTCCCATGATCATATCCCCTGCAAAGCTTGGTGCTGATGTTGTTATTCACAGCATTTCAAAATATATCAGTGGAGGTGCTGATGTTATAGCAGGAGCAATATGTGGGCCTGCAGATCTGATAAATTCCATGATGGATCTCCATCAGGGAACCTTGATGCTCTTGGGGCCAACCATGAATGCAAAAGTGGCATTTGAGATCTCTGAGAGGCTCCCCCACTTGGGATTGAGGATGAAGGAGCACTGTCACAGAGCATATACCTATGCAACCAGGATGAAGAAATTGGGAATGAAAGTTATATATCCTGGCCTAGAAGATCACCCTCAGTATGCCCTTTTGAAGACCATTGTTAACAGTGGGTATGGTTATGGTGGGATTCTGTGTGTGGACATGGAGACTGAGGAGAGGGCCAACAAGCTCATGAACCACCTGCAGAATCATACCCAGTTTGGGCTGATGGCGGTGAGCTTGGGGTACTATGAAACGTTGATGTCATGCTCTGGCAGCAGCACTAGCAGTGAGATGAATGAGGAGGAAAAGGATTTGGCTGGGATCTCGCCAGGTCTGATAAGGATGTCGATTGGTTACAGTGGGACTCTTGAGCAGAGATGGAGCCAATTTGAGGATGCCCTCTCCAGGATGTCTCAAGTCCTGCCTTTTTAA___ACGCTGGGATTGATGCAGATCCAACACTTCGTTTTCTATTTATTATCATAGCTAGTCTGTAAGAGGTGTACTGTAACACTTCTATGTTTTTTATATGCATATATGTATTTCTTCCCCTGATCTGCTATGCTGGAACTACAGATTGCATGCAACTGTTGAAAAATGGTGTGATAATTGCAAGACATAATTTGTCTATTTGAAAGACGGTGTGATAATTGCACGACCTAATTTGGCTTTTTAAAAATCTCTGTACAAATCTGATCAGTCAGAGTGGGCACAAATATGCTATCTCAGAGAGAAGGTACAGAGGAAAATGTGCTGTGGATGGAAATATAAGTAATAGCTGGCATTGTATCATGATATATTTGATCCCAACGATCCCATTTTTAAAAAGTTCAATGCTGAAGCATATTATATGTGCTGATATAAGTTTTTTACTGGTTTGTTTCTGGAATTTGATTTTTGAATATTTACTTTGTGATTCCTGAACATACTGAATAATATCTGTTTACATTTCGTGAAGTGTAGTTAGTTTTTG

Fln Alignment:

Contig3796___MEGTILPCRRSHEDDGAEFSKKHKAMKKWVDPAQGLANARHEFGEHGGVNMSIEASATFTVMEPETMRRMFSGELGPERDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLLQLCSHGDHVVASRCLYGGTHALLAHFLPRACGVSTSFVDIQRLDDVKNAITPSTKVLYFESVSNPTLAVADIPSLSAIAHEKNVKVVVDNTFSPMIISPAKLGADVVIHSISKYISGGADVIAGAICGPADLINSMMDLHQGTLMLLGPTMNAKVAFEISERLPHLGLRMKEHCHRAYTYATRMKKLGMKVIYPGLEDHPQYALLKTIVNSGYGYGGILCVDMETEERANKLMNHLQNHTQFGLMAVSLGYYXXXXXXXXXXXXXXXXXXXKDLAGISPGLIRMSIGYSGTLEQRWSQFEDALSRMSQVLP
A9P2J0______________MEGSVLPCKRPYEEAYGEFCKKNKVMKKWVDPVQGLANARHEFGEHGGVNMSIEASATFTVMEPETMKKMFSGELGPERDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLSQLCNHGDHVVASRCLYGGTHALLAHFLPRACGVSTTFVDIHRLEDVRNAITPSTKVLYFESMSNPTLAVADIPSLSAIAHEKNVKVVVDNTFAPVILSPAKLGADVVIHSISKYISGGADVIAGAICGSANLINSMMDLHQGALMLLGPTMNPKVAFEISERLPHLGLRMKEHCHRSYTYASRMKKMGLKVIYPGLEDHPQYALLKSMVNSGYGYGGMLCVDMESEERANMLMSHLQNYTQFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKELAGISPGLIRMSIGYSGTLEQRWSQFENALTSMTEVLP

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
501	33		66		0.997452
540	20		80		0.995493
558	12			87	0.992554
559	12	87			0.992554
561		87	12		0.992554
562	87			12	0.992554
567	50		50		1.0
622	12		87		0.992554
741		80		20	0.995493
772	14	85			0.993533
807	85		14		0.993533
891		20		80	0.995493
1050	90	10			0.90298
1120	12			87	0.992554
1160		16		83	0.994512
1161	16		83		0.994512
1162	83	16			0.994512
1164			83	16	0.994512
1165			83	16	0.994512
1196		80	20		0.995493
1236	85	14			0.993533
1698		33		66	1.0
1801	40		60		1.0
1867	85		14		0.993533
1873	33	66			1.0
1876		83		16	0.994512
1909		57		42	1.0
1980	66		33		1.0
2004	75		25		0.996473
2013	33		66		0.997452
2014	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain