SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3795

Length: 3001 nt

UniGene Fasta

>sp_v3.0_unigene3795
CGACACTGTTTCCATCTCCCTTGCAGGTTCATGATAGTCCACCCCCTCCCCCCATCCGTGACTAAAAGCGAGGACACCTTTCTATCCGCTTTGAACCAAATGGTCGGGCAGGGCACAGTTTGATGGCTTTCAGTACACTTCTGAATCAGGTTTTGTGCAGCTAGAGATAGTCAACAGAATGTGTGGGATTAGCTTGATCGTTTCTGGTTTTCAACTTCATAGTTCATCATCAGATCACATAAATGGCTTCGAAGATGTTGCTTTTGGAAATTTATTGCAGAAGGAAAAATGGGTTTCTGAAACATTCTCTCCAACAGTGAATGATCTCAAGGAGGTTATCAAGCGGAGGGGTCCAGATCATGTAGGGATTGAAAAGGTGCAACTCAATGTATTCAATGCACATGAACCTGCCTGTAGAGGAGGAAAGACACTTATAAGAGAAGAAAAGCCTCATCTGTTAGAAGATATTTCATATAAAAGTTCCCTGAAGGAAAAGCTGGAGATCTTTATGCAAGAATCCAATGACTCTGAAATTCAAACTGTATATACTGAGAAGATCAAGAAGGAATCTAGCTGCCAGGAACACATCAACAATTGTTCAGATTGTAGCTGCAACACTCTTCAAGCATCAAAAAATTGCATTGTTTCCAGCATTGTGGAAGAAGTTAATGGACAGTCATTCGATGGTTTTCAAGAAAGTACCTTTGCTGAGATGCTCTTCCTGGGTGCCACTTTGCAGCTTCGAGGGGTTCATCCAGTGTTTCAGCCTCTCAGGGATTCGTGGATGAATATATTAGTTTACAATGGTGAAATCTTTGGAGGTATTTTTGTTGGAAAGGAAGAGAATGATACAGAAGTATTAATGGATGCTTTACAAGGGTGCTGTTCCTGCCCTTGCCATGCTAATGGAAGTGACTGCTGTTCTTGTGTCCAAGAAGATCATGTATCTGTACCACAATTACTATCGAAAATAAAGGGTCCTTGGGCTTTAATTTATTGGCAGGCAAAGTCAAAAATTTTGTGGTTTGGAAGAGATGCTTTTGGGAGGCGGAGCCTTTTAGTACATTGGCCTTCTTTAAGTGACTCGCGACTTTTGCTTTCATCTGTAGCACCTTTTGAAAGTAATAAGAAAGGTGGCTGTGGAAGGAATGAAGATGTAGGTGCTCAGTATCAAAGTTATAATTATATGCTGCTGAATGGAACTGAAGGTTCAGATGATCTTGAGTACTGGGATGAATTGGCATGTGGAATTTACAGCATATCCTTCGAAACTACTAAAGGCTCTGTCTGTAATGGAAGAGATTCCTCTCTTATGCTTGTTGGCAGAGTTAAAAAGCACAGCTGGTCTAATCCCCAATTGAAGAAACTGCTAGAATGGCAACGGGATCTGGTTGAGCCTGGATCAAATGATAGCATTATAAGCAAGTCCAACTGTTGTAAACTGGATGTAGACAACATTTTCCGCAAGGACAATTTCTGGAAATCATCTGTCACAGAGAGGAAATCAGCAAAGTTGGGCTATCAGGAGTTCTGTAATGCAGATCAAACGAAAGATTCTCAGATTCCATGTGACTTGTCAAACTTTGCGACCATTAGTGGTGACATTCATATCGACTCTTCCTCCACACAAGCTACTGGATTTCAGCAAATGGCAGAAATTCTTAAAGATTCCAGTATTTGTTCAGTACAACGTGTTGTTTTTGCACTTAAACAAGCTGTTATGCGTCGTGCATGTCAAAGCCAATCTAACAAGATAATAGAAAAGGAGGAAAGGATAGCAAAATGTGCACCGATTGCTGTTCTCTTCTCTGGTGGATTGGACTCAATGATATTAGCAGCTTTGTTGGACCAGTGCCTTGCTCCCAATTGTGAGATAGATCTGTTGAATGTTAGCTTTGACGGTCCTCATGCACCAGATAGAATTTCAGCAAAAGCAGGAGTAATTGAACTTCAAAGAATAGCTCCATTGAGAAGATGGCGTTTGGTTGAAATCGATGCAGATCCTTCCAATTTGCAGCCAGAGACAAAATATTTGACTTCAATCATCCACCCAGCAAAGACATATATGGATCTGAATATTGGAACTGCATTATGGCTAGCAGCCTGTGGTGAAGGATGGGTGGAGGAAGTTGAACTCCTTCAGGGAGAAGATGACTGTTGCCTTTATGAGTCTCATTCACTCTCTACTAGACATAACAGATTCAAGCGCAAAAAGTATAGGTCAGAGGCTAAAATCTTGTTGATTGGTTCTGGAGCAGATGAGCAATGTGCTGGATATGGAAGGCACAGGACAAAATTTAGACTAGGAGGGTGGGTTGCATTGCAAGAAGAGATGAAGATTGATATTCAAAGGATTTGGAAAAGAAACCTTGGAAGAGATGATAGATGTATAGCTGATCACGGCAAGGAGGCCAGGTTCCCATTCTTAGATGAGGATGTTATGAGCACTCTTCTGGATATTCCTCTCTGGGAAATTGCAGACCTTGATAAACCTGCGGGCCAGGGTGATAAGAAGATTCTTAGACAGGTTGCACGGTTATTGGGATTAGAAGGAGCATCTATTATTCCAAAACGAGCTATACAGTTTGGTAGTAGAATAGCAAGGGAGTCCAATCGGAGAAACTTTGGTAGCAACCGTGCAGCAAACCAAGCGTCTGCAGGGAGTACAGTGATCCATTGTTTGAGAGAATGAGTTAAATGAACAGATGCAATCATTTTTTTGGGTGATTAATTTTCCTTTATATTGGGAGTTGTGTATATTAAGAGGGCAGCACTTAGCTGGAAAAGCAAACTGTGCTAAGCAATATTAACATTTTGATCACTGATGTGTTGTCTACTATAATTTGCATGTCTAATGGAACTAAACAGCGCAATAAAATTTTCAATGACTTCATTGGTGAAGCCTATCAAATTTGAGGTTGAAATCAAACGTTATCAGCCAATTCTTGTTTGTCCCAACTTTTAAAAATATCTAATAGTTTAGAAGCTTCATTCATTCAAC

Ace file of the UniGene sp_v3.0_unigene3795

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	asparagine synthetase domain-containing protein 1 [Rattus norvegicus] gb\|EDL99121.1\| similar to HCV NS3-transactivated protein 1 (predicted), isoform CRA_b [Rattus norvegicus]	-	-	0.0	32%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%

Source	Gene names
Sma3	AsnB; At2g03667; CHLREDRAFT_167865; GSVIVT00030028001; LOC_Os12g38630; OSTLU_119575; Os12g0574900; OsI_38845; OsJ_36613; Ot02g04390; PHYPADRAFT_167036; POPTRDRAFT_769925; RCOM_1620400; THAPSDRAFT_1882;

Source	GOs	Term	Type	e value	Identity
Sma3	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	0.0	-
Sma3	asparagine biosynthetic process	GO:0006529	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G03667.1	Asparagine synthase family protein chr2:1114179-1117281 FORWARD LENGTH=610	63%
RefSeq	Arabidopsis thaliana	NP_001077875.2	Asparagine synthase-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002316084.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T9X6

Fln msg: your sequence is longer than subject: 838 - 645

Fln protein: MCGISLIVSGFQLHSSSSDHINGFEDVAFGNLLQKEKWVSETFSPTVNDLKEVIKRRGPDHVGIEKVQLNVFNAHEPACRGGKTLIREEKPHLLEDISYKSSLKEKLEIFMQESNDSEIQTVYTEKIKKESSCQEHINNCSDCSCNTLQASKNCIVSSIVEEVNGQSFDGFQESTFAEMLFLGATLQLRGVHPVFQPLRDSWMNILVYNGEIFGGIFVGKEENDTEVLMDALQGCCSCPCHANGSDCCSCVQEDHVSVPQLLSKIKGPWALIYWQAKSKILWFGRDAFGRRSLLVHWPSLSDSRLLLSSVAPFESNKKGGCGRNEDVGAQYQSYNYMLLNGTEGSDDLEYWDELACGIYSISFETTKGSVCNGRDSSLMLVGRVKKHSWSNPQLKKLLEWQRDLVEPGSNDSIISKSNCCKLDVDNIFRKDNFWKSSVTERKSAKLGYQEFCNADQTKDSQIPCDLSNFATISGDIHIDSSSTQATGFQQMAEILKDSSICSVQRVVFALKQAVMRRACQSQSNKIIEKEERIAKCAPIAVLFSGGLDSMILAALLDQCLAPNCEIDLLNVSFDGPHAPDRISAKAGVIELQRIAPLRRWRLVEIDADPSNLQPETKYLTSIIHPAKTYMDLNIGTALWLAACGEGWVEEVELLQGEDDCCLYESHSLSTRHNRFKRKKYRSEAKILLIGSGADEQCAGYGRHRTKFRLGGWVALQEEMKIDIQRIWKRNLGRDDRCIADHGKEARFPFLDEDVMSTLLDIPLWEIADLDKPAGQGDKKILRQVARLLGLEGASIIPKRAIQFGSRIARESNRRNFGSNRAANQASAGSTVIHCLRE*

Protein Length: 839

Fln nts: CGACACTGTTTCCATCTCCCTTGCAGGTTCATGATAGTCCACCCCCTCCCCCCATCCGTGACTAAAAGCGAGGACACCTTTCTATCCGCTTTGAACCAAATGGTCGGGCAGGGCACAGTTTGATGGCTTTCAGTACACTTCTGAATCAGGTTTTGTGCAGCTAGAGATAGTCAACAGA_-_ATGTGTGGGATTAGCTTGATCGTTTCTGGTTTTCAACTTCATAGTTCATCATCAGATCACATAAATGGCTTCGAAGATGTTGCTTTTGGAAATTTATTGCAGAAGGAAAAATGGGTTTCTGAAACATTCTCTCCAACAGTGAATGATCTCAAGGAGGTTATCAAGCGGAGGGGTCCAGATCATGTAGGGATTGAAAAGGTGCAACTCAATGTATTCAATGCACATGAACCTGCCTGTAGAGGAGGAAAGACACTTATAAGAGAAGAAAAGCCTCATCTGTTAGAAGATATTTCATATAAAAGTTCCCTGAAGGAAAAGCTGGAGATCTTTATGCAAGAATCCAATGACTCTGAAATTCAAACTGTATATACTGAGAAGATCAAGAAGGAATCTAGCTGCCAGGAACACATCAACAATTGTTCAGATTGTAGCTGCAACACTCTTCAAGCATCAAAAAATTGCATTGTTTCCAGCATTGTGGAAGAAGTTAATGGACAGTCATTCGATGGTTTTCAAGAAAGTACCTTTGCTGAGATGCTCTTCCTGGGTGCCACTTTGCAGCTTCGAGGGGTTCATCCAGTGTTTCAGCCTCTCAGGGATTCGTGGATGAATATATTAGTTTACAATGGTGAAATCTTTGGAGGTATTTTTGTTGGAAAGGAAGAGAATGATACAGAAGTATTAATGGATGCTTTACAAGGGTGCTGTTCCTGCCCTTGCCATGCTAATGGAAGTGACTGCTGTTCTTGTGTCCAAGAAGATCATGTATCTGTACCACAATTACTATCGAAAATAAAGGGTCCTTGGGCTTTAATTTATTGGCAGGCAAAGTCAAAAATTTTGTGGTTTGGAAGAGATGCTTTTGGGAGGCGGAGCCTTTTAGTACATTGGCCTTCTTTAAGTGACTCGCGACTTTTGCTTTCATCTGTAGCACCTTTTGAAAGTAATAAGAAAGGTGGCTGTGGAAGGAATGAAGATGTAGGTGCTCAGTATCAAAGTTATAATTATATGCTGCTGAATGGAACTGAAGGTTCAGATGATCTTGAGTACTGGGATGAATTGGCATGTGGAATTTACAGCATATCCTTCGAAACTACTAAAGGCTCTGTCTGTAATGGAAGAGATTCCTCTCTTATGCTTGTTGGCAGAGTTAAAAAGCACAGCTGGTCTAATCCCCAATTGAAGAAACTGCTAGAATGGCAACGGGATCTGGTTGAGCCTGGATCAAATGATAGCATTATAAGCAAGTCCAACTGTTGTAAACTGGATGTAGACAACATTTTCCGCAAGGACAATTTCTGGAAATCATCTGTCACAGAGAGGAAATCAGCAAAGTTGGGCTATCAGGAGTTCTGTAATGCAGATCAAACGAAAGATTCTCAGATTCCATGTGACTTGTCAAACTTTGCGACCATTAGTGGTGACATTCATATCGACTCTTCCTCCACACAAGCTACTGGATTTCAGCAAATGGCAGAAATTCTTAAAGATTCCAGTATTTGTTCAGTACAACGTGTTGTTTTTGCACTTAAACAAGCTGTTATGCGTCGTGCATGTCAAAGCCAATCTAACAAGATAATAGAAAAGGAGGAAAGGATAGCAAAATGTGCACCGATTGCTGTTCTCTTCTCTGGTGGATTGGACTCAATGATATTAGCAGCTTTGTTGGACCAGTGCCTTGCTCCCAATTGTGAGATAGATCTGTTGAATGTTAGCTTTGACGGTCCTCATGCACCAGATAGAATTTCAGCAAAAGCAGGAGTAATTGAACTTCAAAGAATAGCTCCATTGAGAAGATGGCGTTTGGTTGAAATCGATGCAGATCCTTCCAATTTGCAGCCAGAGACAAAATATTTGACTTCAATCATCCACCCAGCAAAGACATATATGGATCTGAATATTGGAACTGCATTATGGCTAGCAGCCTGTGGTGAAGGATGGGTGGAGGAAGTTGAACTCCTTCAGGGAGAAGATGACTGTTGCCTTTATGAGTCTCATTCACTCTCTACTAGACATAACAGATTCAAGCGCAAAAAGTATAGGTCAGAGGCTAAAATCTTGTTGATTGGTTCTGGAGCAGATGAGCAATGTGCTGGATATGGAAGGCACAGGACAAAATTTAGACTAGGAGGGTGGGTTGCATTGCAAGAAGAGATGAAGATTGATATTCAAAGGATTTGGAAAAGAAACCTTGGAAGAGATGATAGATGTATAGCTGATCACGGCAAGGAGGCCAGGTTCCCATTCTTAGATGAGGATGTTATGAGCACTCTTCTGGATATTCCTCTCTGGGAAATTGCAGACCTTGATAAACCTGCGGGCCAGGGTGATAAGAAGATTCTTAGACAGGTTGCACGGTTATTGGGATTAGAAGGAGCATCTATTATTCCAAAACGAGCTATACAGTTTGGTAGTAGAATAGCAAGGGAGTCCAATCGGAGAAACTTTGGTAGCAACCGTGCAGCAAACCAAGCGTCTGCAGGGAGTACAGTGATCCATTGTTTGAGAGAATGA___GTTAAATGAACAGATGCAATCATTTTTTTGGGTGATTAATTTTCCTTTATATTGGGAGTTGTGTATATTAAGAGGGCAGCACTTAGCTGGAAAAGCAAACTGTGCTAAGCAATATTAACATTTTGATCACTGATGTGTTGTCTACTATAATTTGCATGTCTAATGGAACTAAACAGCGCAATAAAATTTTCAATGACTTCATTGGTGAAGCCTATCAAATTTGAGGTTGAAATCAAACGTTATCAGCCAATTCTTGTTTGTCCCAACTTTTAAAAATATCTAATAGTTTAGAAGCTTCATTCATTCAAC

Fln Alignment:

Contig3795___EMLFLGATLQLRGVHPVFQPLRDSWMNILVYNGEIFGGIFVGKEENDTEVLMDALQGCCSC--PCHANGSDCCSCVQEDHVSVPQLLSKIKGPWALIYWQAKSKILWFGRDAFGRRSLLVHWPXXXXXXXXXXXVAPFESNKKGGCGRNEDVGAQYQSYNYMLLNGTEGSDDLEYWDELACGIYSISFETTKGSVCNGRDSSLMLVGRVKKHSWSNPQLKKLLEWQRDLVEPGSNDSIISKSNCCKLDVDNIFRKDNFWKSSVTERKSAKLGYQEFCNADQTKDSQIPCDLSNFATISGDIHIDSSSTQATGFQQMAEILKDSSICSVQRVVFALKQAVMRRACQSQSNKIIEKEERIAKCAPIAVLFSGGLDSMILAALLDQCLAPNCEIDLLNVSFDGPHAPDRISAKAGVIELQRIAPLRRWRLVEIDADPSNLQPETKYLTSIIHPAKTYMDLNIGTALWLAACGEGWVEEVELLQGEDDCCLYESHSLSTRHNRFKRKKYRSEAKILLIGSGADEQCAGYGRHRTKFRLGGWVALQEEMKIDIQRIWKRNLGRDDRCIADHGKEARFPFLDEDVMSTLLDIPLWEIADLDKPAGQGDKKILRQVARLLGLEGASIIPKRAIQFGSRIARESNRRNFGSNRAANQASAGSTVIH
D7T9X6______________ELHFIGATLQLRGVNPITQPLVDESGNILVYNGEIFGGIHVGSDSNDAEILMQSLGKCCTCGSPGHTTA---CNYSGLGKSSIPELLSTIKGPWAIIYWQDSSRTMWFGRDAFGRRSLLVHWPNLEDCRFLLSSVSPISSVE--------------QSSDFEVENRIT---NINFWDELSCGVYSVSIGSSKADKC--------LLGEVKKHEWTNPILKELVKWERTYV----------------------------------EPKPAELHFM------------IPSK-------QPDVHSICLERKPSGLGPM----QTSVPVPAQTVLIALRESMMRRTTQSAIFPAVTCDLQQEELVPVAILFSGGLDSMILAALLDECLQPSYGIDLLNVSFDGQSAPDRISAKAGLKELQRISPLRRWKLVEVDADLSKLTQETKHVMSLINPAKTYMDLNIGIALWLAAGGDGWVHE-EI--GEID------------NDNYQRVKYKSKARILLVGSGADEQCAGYGRHKTKYRSGSWLGLNEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWEVANLDQPSGTGDKKILREVAQMLGIYEAATLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVVIY

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
465	33		66		0.997452
468	66		33		0.997452
605	20			80	0.995493
807		14	85		0.993533
808	14		85		0.993533
810			85	14	0.993533
856	25		75		0.996473
857	75	25			0.996473
859			75	25	0.996473
2558	75			25	1.0
2673	80		20		0.999996
2711	81		18		0.999994
2781	66		33		0.997452
2797	80		20		0.995493
2848		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain