SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3794

Length: 2975 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3794
CACTCAAAACAGTTCTCTAGCCGCTTCTGATGCGTTGTCTCCGTTGACTTCTGACAAATCTCCAAATCATTACAAGGGTGGTAGGCCAGGTTCCTATCCTGTTAATGTTTTGGGAATTATCTCTGAGAATTGTGCAAGTGAACTTTGTGACAAAAGAACTGATAACCAAGGCAATATGCTGCTGGAAGATGATAATACTAAATTAATTCGTGAGAATCCTAATAAAGGGACAATACAGGAAGTGGGCACTTTGGAAATTAAAGATAGCACTAGTTCTGATTTTGTCGTCAAGGAGGAATTAATTCTGTCTACAAATTCAGATGTTCTGCCAATGAGAGTATCTACTGAAGATTTAGGTAACAAGGGAAGGACAAGTGAAAGGATTGCTAACTCCTTAGGTATGCCAGAATCACATCTAGCTGATTTGGGTAAGGTTAGAGAAAGGCCTGAGAAGGAATTACCAGGCAGCAGTTCATCTGTAGATGCGAAGTTTGAGTGGAGGAAGGAAAATGTAAATGAGGATCATTTCAAAATTGACCGTGAGTCCATGAAGAGGCTGAAAGATTGTAAAGATTCATTAAAGGCATTGTCTTGTGGGCATGCTTCAAGTGAGCATCAAAATGAGGCTGATGTGAGCAAGGCAACAGGTACAACTAACTGCATTTTGAACTCTGAAACAAATCAATCGTTGGTTATGAAGGTGTCTTCCATCAGACAAGCAGAAACTTGTGAACTTGAGTTTCTGGTCAAGTGGGTGGGAAAATCTCACATTCATAATGAATGGGTTTGTGAATCTCGAATTAAGACACTTGCAAAGCGAAAGCTTGATAATTACAAGGCAAAGTATGGGACTGTACCAATGAATATATGTCAGGAAAAGTGGAATCAACCAGAAAGGATTGTGGCTCGCCGTTCAGTGCATGGTGTTACAGAAGTATTTGTTAAATGGTGTGGTTTGCATTATGATGAGTGCACTTGGGAACGCATGGATGATCCTGCTATTGCAGAAAATAAGCACTTGCTATCTTACTTTGAAGAATTTGAGACAAAGGCATTTGTTGAGGATGAATCCACTGATGCTTCTGGAGACACTGATTCAGCTGTCAAGAAAAGTCAAAGACCAAGTGAAATTGAGCCACTTACAGAGCAGCCTGGTGAATTGAAGGGAGGTACCCTGTTTCCTCATCAACTAGAAGCATTGAATTGGCTGAGGAAATGCTGGCACAAGAAGAAAAATGTTATCCTAGCTGATGAAATGGGTCTTGGGAAAACCATTTCTGCTTGTGCTTTCATCTCATCACTATGTGAGGAATTCAAGGCAAAATCTCCATGTTTAGTTTTGGTTCCACTGTCAACAATGCCAAATTGGCTTGCTGAGTTTTCTCTTTGGGCTCCCCATCTGAATGTGGTTGAATATCATGGTAGTGCAAAGGCAAGAGCTACAATTCGACAATATGAATGGTATGCCAGCGGTTCCAAAGAGTTCTGTAAACATCAAAGGGTATATAAGTTCAATGTTTTGTTGACGAATTATGAAATGGTGATGGCTGATTCTAGTCATCTTCGTGGAGTTCCTTGGGAGGTCCTTATTGTTGATGAAGGGCATCGGTTGAAAAATGCAGGAAGCAAACTTTTCACTTTGTTAAATACATTTTCATTTGAACATCGTGTACTCTTGACGGGTACCCCATTGCAAAATAATCTAGGTGAGATGTACAACTTACTGAATTTCTTGCAGCCAGATAAGTTCCCATCATTATCTGCTTTTGAAGAAAAGTTTAATGATCTCACCACAGCTGAAAAAGTTGAAGAGCTGAAGAAACTAGTTGCACCACACATGCTTCGAAGGCTTAAGAAGGATGCTATGCAAAATATTCCTCCTAAGACTGAACACATAGTTCCTATGGAGCTGAGTTCTGTTCAAGCTGAGTATTATCGTTTAATGCTTACAAAAAATTATCAGATTCTGCGTAATATGGGAAGATCTGGATATCAGCAATCAATGCTAAATATTGTAATGCAACTGCGGAAGGTCTGTAATCATCCTTATCTTATAACTGGTACTGAACCAGAGACTGGATCTGCAGAGTTCTTGCAGGAAATGCGCATAAAAGACATTTGCAAAGCTGACATTGTTGCATTCCATGCTTAAAGATTTGAAGAAACATGGCCATCGTGTTCTGATATTTTCACAAATGACAAAACTGCTTGATATTCTGGAGGACTATCTCACTTTTGAGTTTGGACCACACTCCTATGAGCGAGTGGATGGATCAGTGTCTTTGGCAGACCGCCAAATTGCTATTACACGTTTCAATCAGGATAAATCACGCTTTGTTTTTCTTTTGTCAACTCGCTCTTGTGGCCTTGGCATCAATCTGGCCACTGCTGATACTGTAATTATTTATGATTCTGACTTCAATCCACATGCCGATATTCAGGCAATGAATCGTGCCCACCGCATTGGGCAGTCCAAAAGGCTTTTGGTTTATAGACTTGTTGTACGTGCCAGTGTAGAAGAGCGAATCCTGCAACTTGCAAAGAAAAAGTTAATGCTTGATCACCTTTTTGTTAACAAGTCAGGTTCTCAAAAGGAGGTAGAAGATATCTTGCGGTGGGGCACTGAAGAGCTCTTCCAAGATTCTGGTGAATTTGCTAGCAAGACATCTCGAGGAGAGAGCCTGAGCCATTTTGAAGGTGCAAATGAGGTGGATCAGCGGCAGAGAAAGAAAGTTGGTGGTCTGGGGGATGTCTACGAGGACAAGTGTTATACTGATGGGTATTCAAAAGTTGTGTGGGATGATGCTGCAATTGCACGGTTGCTTGATCGCTCAGAGCTGAATGGGGGAAGCTCTGAAGCATTGGACGGAGAGTCAGAAACTGACATGCTAGGGTCTTTAAAGGCTTTGGATTGGAACGAACATGAAACAACAGATGAGCAAGAGGGTGGTGATTTGGGTGCTAATATTGTTGTT

Ace file of the UniGene sp_v3.0_unigene3794 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj\|BAB08833.1\| helicase-like protein [Arabidopsis thaliana]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	SNF2 family DNA-dependent ATPase	-	-	5.211e-11	-

Source	Gene names
Sma3	AT4g31900; At2g25170; At4g31900; At5g19310; At5g44800; CHR1503; CHR1504; CHR1512; CHR1514; CHR906; CHR909; CHR911; CHR926; F13D4.130; GSVIVT00019937001; GSVIVT00030136001; GSVIVT00032703001; GYM; MICPUCDRAFT_28265; MICPUN_91017; MtrDRAFT_AC149204g19v2; OS

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3		IPR000910	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Rubredoxin-type fold	IPR004039	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G44800.1	CHR4, PKR1 chromatin remodeling 4 chr5:18083659-18092162 REVERSE LENGTH=2223	58%
RefSeq	Arabidopsis thaliana	NP_199293.3	chromatin remodeling 4 protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002303505.1	chromatin remodeling complex subunit [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: Separated hits, possible frame ERROR between 2056 and 2124, STOP codon was not found. Distance to subject end: 31 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 934 - 377

Fln protein: MLLEDDNTKLIRENPNKGTIQEVGTLEIKDSTSSDFVVKEELILSTNSDVLPMRVSTEDLGNKGRTSERIANSLGMPESHLADLGKVRERPEKELPGSSSSVDAKFEWRKENVNEDHFKIDRESMKRLKDCKDSLKALSCGHASSEHQNEADVSKATGTTNCILNSETNQSLVMKVSSIRQAETCELEFLVKWVGKSHIHNEWVCESRIKTLAKRKLDNYKAKYGTVPMNICQEKWNQPERIVARRSVHGVTEVFVKWCGLHYDECTWERMDDPAIAENKHLLSYFEEFETKAFVEDESTDASGDTDSAVKKSQRPSEIEPLTEQPGELKGGTLFPHQLEALNWLRKCWHKKKNVILADEMGLGKTISACAFISSLCEEFKAKSPCLVLVPLSTMPNWLAEFSLWAPHLNVVEYHGSAKARATIRQYEWYASGSKEFCKHQRVYKFNVLLTNYEMVMADSSHLRGVPWEVLIVDEGHRLKNAGSKLFTLLNTFSFEHRVLLTGTPLQNNLGEMYNLLNFLQPDKFPSLSAFEEKFNDLTTAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTEHIVPMELSSVQAEYYRLMLTKNYQILRNMGRSGYQQSMLNIVMQLRKVCNHPYLxxxxxxxxxxxxxxxxxxxxxxxxKLTLLHSMLKDLKKHGHRVLIFSQMTKLLDILEDYLTFEFGPHSYERVDGSVSLADRQIAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDHLFVNKSGSQKEVEDILRWGTEELFQDSGEFASKTSRGESLSHFEGANEVDQRQRKKVGGLGDVYEDKCYTDGYSKVVWDDAAIARLLDRSELNGGSSEALDGESETDMLGSLKALDWNEHETTDEQEGGDLGANIVV

Protein Length: 935

Fln nts: CACTCAAAACAGTTCTCTAGCCGCTTCTGATGCGTTGTCTCCGTTGACTTCTGACAAATCTCCAAATCATTACAAGGGTGGTAGGCCAGGTTCCTATCCTGTTAATGTTTTGGGAATTATCTCTGAGAATTGTGCAAGTGAACTTTGTGACAAAAGAACTGATAACCAAGGCAAT_-_ATGCTGCTGGAAGATGATAATACTAAATTAATTCGTGAGAATCCTAATAAAGGGACAATACAGGAAGTGGGCACTTTGGAAATTAAAGATAGCACTAGTTCTGATTTTGTCGTCAAGGAGGAATTAATTCTGTCTACAAATTCAGATGTTCTGCCAATGAGAGTATCTACTGAAGATTTAGGTAACAAGGGAAGGACAAGTGAAAGGATTGCTAACTCCTTAGGTATGCCAGAATCACATCTAGCTGATTTGGGTAAGGTTAGAGAAAGGCCTGAGAAGGAATTACCAGGCAGCAGTTCATCTGTAGATGCGAAGTTTGAGTGGAGGAAGGAAAATGTAAATGAGGATCATTTCAAAATTGACCGTGAGTCCATGAAGAGGCTGAAAGATTGTAAAGATTCATTAAAGGCATTGTCTTGTGGGCATGCTTCAAGTGAGCATCAAAATGAGGCTGATGTGAGCAAGGCAACAGGTACAACTAACTGCATTTTGAACTCTGAAACAAATCAATCGTTGGTTATGAAGGTGTCTTCCATCAGACAAGCAGAAACTTGTGAACTTGAGTTTCTGGTCAAGTGGGTGGGAAAATCTCACATTCATAATGAATGGGTTTGTGAATCTCGAATTAAGACACTTGCAAAGCGAAAGCTTGATAATTACAAGGCAAAGTATGGGACTGTACCAATGAATATATGTCAGGAAAAGTGGAATCAACCAGAAAGGATTGTGGCTCGCCGTTCAGTGCATGGTGTTACAGAAGTATTTGTTAAATGGTGTGGTTTGCATTATGATGAGTGCACTTGGGAACGCATGGATGATCCTGCTATTGCAGAAAATAAGCACTTGCTATCTTACTTTGAAGAATTTGAGACAAAGGCATTTGTTGAGGATGAATCCACTGATGCTTCTGGAGACACTGATTCAGCTGTCAAGAAAAGTCAAAGACCAAGTGAAATTGAGCCACTTACAGAGCAGCCTGGTGAATTGAAGGGAGGTACCCTGTTTCCTCATCAACTAGAAGCATTGAATTGGCTGAGGAAATGCTGGCACAAGAAGAAAAATGTTATCCTAGCTGATGAAATGGGTCTTGGGAAAACCATTTCTGCTTGTGCTTTCATCTCATCACTATGTGAGGAATTCAAGGCAAAATCTCCATGTTTAGTTTTGGTTCCACTGTCAACAATGCCAAATTGGCTTGCTGAGTTTTCTCTTTGGGCTCCCCATCTGAATGTGGTTGAATATCATGGTAGTGCAAAGGCAAGAGCTACAATTCGACAATATGAATGGTATGCCAGCGGTTCCAAAGAGTTCTGTAAACATCAAAGGGTATATAAGTTCAATGTTTTGTTGACGAATTATGAAATGGTGATGGCTGATTCTAGTCATCTTCGTGGAGTTCCTTGGGAGGTCCTTATTGTTGATGAAGGGCATCGGTTGAAAAATGCAGGAAGCAAACTTTTCACTTTGTTAAATACATTTTCATTTGAACATCGTGTACTCTTGACGGGTACCCCATTGCAAAATAATCTAGGTGAGATGTACAACTTACTGAATTTCTTGCAGCCAGATAAGTTCCCATCATTATCTGCTTTTGAAGAAAAGTTTAATGATCTCACCACAGCTGAAAAAGTTGAAGAGCTGAAGAAACTAGTTGCACCACACATGCTTCGAAGGCTTAAGAAGGATGCTATGCAAAATATTCCTCCTAAGACTGAACACATAGTTCCTATGGAGCTGAGTTCTGTTCAAGCTGAGTATTATCGTTTAATGCTTACAAAAAATTATCAGATTCTGCGTAATATGGGAAGATCTGGATATCAGCAATCAATGCTAAATATTGTAATGCAACTGCGGAAGGTCTGTAATCATCCTTATCTTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGCTGACATTGTTGCATTCCATGCTTAAAGATTTGAAGAAACATGGCCATCGTGTTCTGATATTTTCACAAATGACAAAACTGCTTGATATTCTGGAGGACTATCTCACTTTTGAGTTTGGACCACACTCCTATGAGCGAGTGGATGGATCAGTGTCTTTGGCAGACCGCCAAATTGCTATTACACGTTTCAATCAGGATAAATCACGCTTTGTTTTTCTTTTGTCAACTCGCTCTTGTGGCCTTGGCATCAATCTGGCCACTGCTGATACTGTAATTATTTATGATTCTGACTTCAATCCACATGCCGATATTCAGGCAATGAATCGTGCCCACCGCATTGGGCAGTCCAAAAGGCTTTTGGTTTATAGACTTGTTGTACGTGCCAGTGTAGAAGAGCGAATCCTGCAACTTGCAAAGAAAAAGTTAATGCTTGATCACCTTTTTGTTAACAAGTCAGGTTCTCAAAAGGAGGTAGAAGATATCTTGCGGTGGGGCACTGAAGAGCTCTTCCAAGATTCTGGTGAATTTGCTAGCAAGACATCTCGAGGAGAGAGCCTGAGCCATTTTGAAGGTGCAAATGAGGTGGATCAGCGGCAGAGAAAGAAAGTTGGTGGTCTGGGGGATGTCTACGAGGACAAGTGTTATACTGATGGGTATTCAAAAGTTGTGTGGGATGATGCTGCAATTGCACGGTTGCTTGATCGCTCAGAGCTGAATGGGGGAAGCTCTGAAGCATTGGACGGAGAGTCAGAAACTGACATGCTAGGGTCTTTAAAGGCTTTGGATTGGAACGAACATGAAACAACAGATGAGCAAGAGGGTGGTGATTTGGGTGCTAATATTGTTGTT

Fln Alignment:

Contig3794___EKFNDLTTAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTEHIVPMELSSVQAEYYRLMLTKNYQILRNMGRSGYQQSML----NIVMQLRKVCNHPYLIxxxxxxxxxxxxxxxxxxxxxxxKLTLLHSMLKDLKKHGHRVLIFSQMTKLLDILEDYLTFEFGPHSYERVDGSVSLADRQIAITRFNQDKSRF-VFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDHLFVNKSGSQKE
D5AD70______________EETEDKKKVQVISKLHAILRPFLLRRLKEDVEKNLPSKKEIILYARMTEDQRKIQEHLLNKSL-ITYLHARSEYGKAMKTRLENLMLQLRKNFNHPDLLxxxxxxxxxxxxxxxxxxxxxxxKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLL-DYCLSESG-HDMCRIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLCTSHSAECRMLKVAFDKLKLERVVIEKGQFHQE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
988	16			83	0.994512
989		83		16	0.994512
990		83	16		0.994512
991	83			16	0.994512
1130	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain