SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3784

Length: 1210 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3784 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative multidrug resistance protein; AltName: Full=P-glycoprotein dbj\|BAD16475.1\| putative multidrug resistance p-glycoprotein [Oryza sativa Japonica Group]	-	-	0.0	48%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	50%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	8.819e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	2.459e-07	-

Source	Gene names
Sma3	At3g28344; At3g28345; At3g28360; At3g28380; At3g28390; At3g28415; G1262; GSVIVT00016667001; GSVIVT00020844001; GSVIVT00020845001; GSVIVT00020849001; GSVIVT00030719001; LOC_Os02g09720; MDR13; MDR18; MDR19; MDR20; MDR21; MFJ20.11; MFJ20.4; MFJ20.6; MFJ20.7;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G28345.1	ABC transporter family protein chr3:10593921-10598775 REVERSE LENGTH=1240	45%
RefSeq	Arabidopsis thaliana	NP_189475.1	ABC transporter B family member 15 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002324019.1	multidrug/pheromone exporter, MDR family, ABC transporter family, partial [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: STOP codon was not found. Distance to subject end: 347 aas, your sequence is shorter than subject: 403 - 1316

Fln protein: TVVVAHRLSTIQGAHKIAVMQKGEVIEFGGHQELIKNPNGAYTALLQTQEKALSDETIALNAASNASSPSGIASPCFQLKSPTNSNQWHSPISDLEQEKVRANAAPRSSFWRLLALNVPEWKNTLMGCVGAFGYAATQIAYSVTVASMISALFLKDGNEIRSKVGTYCILFIALAVHVFAVNLVQHYNFSVVGEYLAKRIRQRMFSKILTFEVGWFDEDQNSSGAICSKLAKEANVVRSLVGDRVSLLVECLSGVIITVTLGMFVAWRFAIVLIAVQPLMVLCFYTRSVLLKSVSGKSIKAQNQGSQAAFECVTHHKTIAAFCSQERIIHYFDSTQVALNKQSWYAGLALGTSKFFEICYWPFEFWYGGKLIAQGVLSFHGFLLNHFIFGRLGRMIADAGSMT

Protein Length: 404

Fln nts: TACGGTGGTTGTCGCTCACCGTCTCTCCACTATTCAGGGAGCTCATAAAATTGCGGTGATGCAAAAAGGTGAAGTCATCGAATTCGGTGGACACCAAGAACTGATTAAGAACCCAAATGGGGCATATACAGCTTTGCTACAAACACAGGAGAAGGCCCTGTCAGATGAGACTATTGCTCTTAACGCTGCATCAAATGCTTCAAGTCCATCCGGAATAGCTAGCCCATGCTTCCAACTAAAATCACCCACTAATTCAAACCAATGGCATAGTCCCATATCCGACCTGGAACAAGAAAAAGTGAGAGCTAATGCTGCGCCGAGATCTTCCTTCTGGAGGTTGCTTGCATTGAATGTTCCAGAGTGGAAGAATACTCTCATGGGCTGTGTAGGCGCCTTTGGATATGCAGCAACTCAAATAGCTTATTCCGTCACTGTGGCAAGCATGATTTCTGCGCTCTTTCTGAAAGACGGAAACGAGATCCGATCAAAAGTCGGAACTTATTGCATTCTTTTTATAGCCCTCGCAGTGCATGTATTTGCAGTGAATTTGGTTCAACACTATAACTTCTCAGTGGTGGGCGAGTATCTAGCAAAAAGGATCCGCCAAAGAATGTTTTCAAAAATCCTGACATTCGAAGTTGGCTGGTTCGATGAGGACCAAAATTCCAGTGGAGCTATTTGTTCAAAGTTGGCCAAGGAAGCTAATGTGGTAAGATCCTTGGTAGGAGATCGTGTTTCGCTTCTAGTGGAGTGTCTCTCTGGAGTAATTATAACAGTGACACTGGGAATGTTTGTAGCATGGCGATTTGCTATTGTGTTGATTGCTGTGCAGCCGTTGATGGTTCTTTGTTTCTATACTCGAAGCGTCCTCCTTAAAAGCGTTTCGGGTAAATCTATTAAGGCGCAGAATCAAGGCAGCCAAGCGGCCTTCGAATGTGTCACACATCATAAAACCATAGCGGCTTTTTGCTCTCAGGAGAGAATTATTCATTATTTTGACTCCACACAGGTTGCGCTGAATAAACAGTCATGGTATGCAGGATTGGCCCTGGGAACTTCTAAGTTTTTTGAAATATGCTATTGGCCTTTTGAGTTTTGGTACGGGGGGAAGCTCATAGCACAGGGAGTTCTGAGTTTCCATGGTTTTTTATTGAACCATTTTATTTTTGGAAGATTGGGTCGTATGATAGCCGATGCTGGAAGTATGACT

Fln Alignment:

Contig3784___TVVVAHRLSTIQGAHKIAVMQKGEVIEFGGHQELIKNPNGAYTALLQTQEKA
E6Y0T0______________TIVIAHRLSTIKDADLIAVVKNGKIAEQGKHDELLKKRNGAYASLVQLHKSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain