SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3780

Length: 2994 nt

UniGene Fasta

>sp_v3.0_unigene3780
GAGAGAAAGCTTCTGGGGCAGAAAGAGGGAGCCAAGCCCTCGCCTTCCTGCCATAGCTGTGCTAAAATAAAATACTTGAATGACTTGTCTCCTGGATAATCCCGAGTAACAGAAGTTAGTTCAATGGTGTTAGTATTCATCACTCGGTTGCTTGGGGGTCTATAGAGGAATCTAGGGCTTTTGATGACAGAAAGTGAGGACGAAGTGGGGATTATTGGTAAGAGTTATTATTGAGTGTCGAATGGAAGAACAGACGAGAGAATTGAGAGAGCAAGAGTTGTAGGAGTAAACATGGAAGGATCAGGATCAGATCAAGATGCTGCTGATCAGCAAAATCCAGCCAGGAAGCGCTATCATAGACACACTGCACACCAAATTCAGGAATTGGAAGCGTTGTTCAAGAAGCACCCACATCCTGATGAGAAACAAAGGCTTCAGCTCAGCAGAGATCTGGGTCTGGAACCCCGGCAGGTTAAGTTTTGGTTTCAGAATCGCCGAACCCAAATGAAGGCTCAGGGCGAGCGTGCAGACAATAATACACTTCGTGCAGAGAATGAAAGAATAAGAGGTGAGAATCTGGCCATTCGAGAGGCCCTCAAATATGTGCTTTGCTCAAATTGTGGAGGACCTCCTGCTGGAGAAACCTCATTTGAAGAACAACATCGCCTACGTTTGGAAAATGCTCGCTTGAAAGAAGAGCTGGATCGTTTGTCTGGTATTGCTGCAAAGTACATTGGGAGGCCTATGCAAACACCAGCTTCTTTACATCCAATTTCAATGTCCTCCTTGGACCTGGGCATGGTAGGCTATGGAGCACAAAATGTGGGGCCTTCAGCTGATATTATCTCCCCAAGCCAATCTTTAGCTGAATTTGCGATGCCCACAGGCGTTGCTTTAGAGAAGAATCTAATGAGAGAGCTAGCAATTAATGCTATGGAAGAGGTCAGAAACTTGGCACACACAGACGAACCGCTGTGGATCAGAAATCTCAATGACAATAAAGACGTTCTCAGTTTGGAATGTTACACAAAGATATTTCCCAGAGCCATGGAGTCCAAGGCCTACAATGTCAGAAAGGAGGTATCGAGGGACTCCGGCTTGGTAATACTCAATGGACATTCACTGGCCGATATCTTCATGGACACGAATAAATGGGCTGAAATGTTTCCGACGATTGTGGCTAGAGCTAAAACAATAGAAGTTATAATCCCTGGAACTCCTGGGAACAGAAATGGCTCATTGCAGCTGATGTATGCCGAACTGCATGTTTTAGCTCACTTAGTTTTACCGCGTGAAATTTATTTCCTTCGTTATTGCCATCAATCTCCCGATGGAATATGGGCAATTGTAGATGTTTCTGTAGACAATATTATACAGAATCCACAAGCGTCGCTGTTACGCTGCCGCAAGCTTCCCTCAGGCCTTGTTATTCAAGAGATGCCCAATGGTTATTGTAAGGTTACTTGGGTAGAGCATGTGGAGCCTGAAGATCGAGCAGGCGTTCATCGCTTGTATCGACAACTAGTCAACAGCGGAATGGCATTCGGTGCGCATCGCTGGTTGGTGACTCTGCAGAGGAACTGCGAAAGGCTTACCAATCTCATGGCCGCTAGCATTTCTGCAAGAGAACCCGGAGTTTCTTCCCCAGATGAGCGGAGGTTCCTGATGAAGCTGGCGCAGCGTATGACGAGCACCTTCTGCGCCAACATTAGTGCGTCAACAGCCCAACGGTGGAGCGCTGCATCCGGATCAAATGATGACGGTGTTCGCCTTACTACGAGGAAAAACGCTAGTTCCACAGGCACTGTTCTCAGCGCTGCCACTTCTCTCTGGCTGCCAGTTTCTCCTCAGCGGTTGTTTGAATTTTTTAAAGATAAACGAAACAGGCCCCAGTGGGATGCAGTTTCTGGTGGGAATTCAACGGAGGAGGTTGTAGATTTTTCAAATGGGTCCCATCCTGGAAACTGCATTACTCTTTTGAGAGCTTACACTTCTATGCAGAATAACTTGTTTATTCTCCAGGAAAGTTGCACAGATACTTCGGGGTCCCTCATAGTGTATGCACCAGTTGACATAAATGCTATGAAGGCCGCAATGAATAGTGGGAGTGACCCATCTATCATACCCGTCCTTCCATCAGGCATCTCTATTCTGCCCGATGGTTCAGACAACAGGAGACTGCAGGCATCTTCTAGCAACAGCAGCAGTATTGGTAGCCCTGGCAATACAGGAGGAGGCTCATTATTGACGGTGGTATTCGAAATAAATGTTGGAAATTCACCCTCCTCAAACATGGAACCCCACGCCACAACTGTCAATCACATCGTCTGCAATGCGGTGCAACAAATCAAAGCAGCATTGCATTGTCTAGATGTCTGATGCAGCCATATGCTGCATCCCCCCTTTAATTACTTTGCTGTACACACTGATAACTTCATTTGAGTTTTTAACCATAGGCCTAACATCATCATCTGTGCGTCTTAGAATTTTACTTCTACAAGATAAATATCTAGGGGATTGGATAATTACAACGCACAGCTCACATTGAGCGGAGCGTTGGATTCCAACCTGTATGAGGCCCGAAGGAGAGAAATGTATTGGATGGCAGCAGCCAGCGTCCATTGCTAAACCGGGCTAATCTATATTTGGCTAGTACTACTTTTGCATAGGCAACCTTGGGGGAGTCAAGAACGCACCACACTCAATCTATCCTTGCTATGTGGTAAAGCTGTCAACAATTTTTATTATCATGCACAGACGACAGTCAGTACTCGCCTTCTGTCAAATTCCTGATGGAGAGAAGAGTGTTTAAATGCATGTGCTTCACCACACAGCAAGGGTAATGGTTCGGGCATTGACTTCCTGCCCACGATGTCAGGGAGGGGAAACAAATTGGCAAATTGCAATAAAACAACCGGTATTCATCTCGGAGTACTAAAGCTCCCTTTGATTCTTTTTGTGACAGACACTAACTAATTAGTTATCCAGTATAAT

Ace file of the UniGene sp_v3.0_unigene3780

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homeodomain protein HOX3 [Gossypium hirsutum]	-	-	0.0	54%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	51%
Sma3	Homeobox protein, putative	-	-	7.562e-18	-

Source	Gene names
Sma3	ANL2; AT1G05230; AT1G79840.1; ATML1; At1g05230; At1g17920; At1g73360; At3g61150; At4g00730; At4g04890; At4g21750; At5g46880; At5g52170; BIP1A; F17L22.210; F17P19.7; F6N23.10; GL2-1; GL2-2; GL2-4; GL2-5; GL2-6; GL2-7; GL2-8; GSVIVT00000869001; GSVIVT000069

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	epidermal cell differentiation	GO:0009913	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73360.1	HDG11, EDT1, ATHDG11 homeodomain GLABROUS 11 chr1:27578893-27581820 REVERSE LENGTH=722	48%
RefSeq	Arabidopsis thaliana	NP_177479.1	homeobox-leucine zipper protein HDG11 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002329753.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg:

Fln protein: MEGSGSDQDAADQQNPARKRYHRHTAHQIQELEALFKKHPHPDEKQRLQLSRDLGLEPRQVKFWFQNRRTQMKAQGERADNNTLRAENERIRGENLAIREALKYVLCSNCGGPPAGETSFEEQHRLRLENARLKEELDRLSGIAAKYIGRPMQTPASLHPISMSSLDLGMVGYGAQNVGPSADIISPSQSLAEFAMPTGVALEKNLMRELAINAMEEVRNLAHTDEPLWIRNLNDNKDVLSLECYTKIFPRAMESKAYNVRKEVSRDSGLVILNGHSLADIFMDTNKWAEMFPTIVARAKTIEVIIPGTPGNRNGSLQLMYAELHVLAHLVLPREIYFLRYCHQSPDGIWAIVDVSVDNIIQNPQASLLRCRKLPSGLVIQEMPNGYCKVTWVEHVEPEDRAGVHRLYRQLVNSGMAFGAHRWLVTLQRNCERLTNLMAASISAREPGVSSPDERRFLMKLAQRMTSTFCANISASTAQRWSAASGSNDDGVRLTTRKNASSTGTVLSAATSLWLPVSPQRLFEFFKDKRNRPQWDAVSGGNSTEEVVDFSNGSHPGNCITLLRAYTSMQNNLFILQESCTDTSGSLIVYAPVDINAMKAAMNSGSDPSIIPVLPSGISILPDGSDNRRLQASSSNSSSIGSPGNTGGGSLLTVVFEINVGNSPSSNMEPHATTVNHIVCNAVQQIKAALHCLDV*

Protein Length: 697

Fln nts: GAGAGAAAGCTTCTGGGGCAGAAAGAGGGAGCCAAGCCCTCGCCTTCCTGCCATAGCTGTGCTAAAATAAAATACTTGAATGACTTGTCTCCTGGATAATCCCGAGTAACAGAAGTTAGTTCAATGGTGTTAGTATTCATCACTCGGTTGCTTGGGGGTCTATAGAGGAATCTAGGGCTTTTGATGACAGAAAGTGAGGACGAAGTGGGGATTATTGGTAAGAGTTATTATTGAGTGTCGAATGGAAGAACAGACGAGAGAATTGAGAGAGCAAGAGTTGTAGGAGTAAAC_-_ATGGAAGGATCAGGATCAGATCAAGATGCTGCTGATCAGCAAAATCCAGCCAGGAAGCGCTATCATAGACACACTGCACACCAAATTCAGGAATTGGAAGCGTTGTTCAAGAAGCACCCACATCCTGATGAGAAACAAAGGCTTCAGCTCAGCAGAGATCTGGGTCTGGAACCCCGGCAGGTTAAGTTTTGGTTTCAGAATCGCCGAACCCAAATGAAGGCTCAGGGCGAGCGTGCAGACAATAATACACTTCGTGCAGAGAATGAAAGAATAAGAGGTGAGAATCTGGCCATTCGAGAGGCCCTCAAATATGTGCTTTGCTCAAATTGTGGAGGACCTCCTGCTGGAGAAACCTCATTTGAAGAACAACATCGCCTACGTTTGGAAAATGCTCGCTTGAAAGAAGAGCTGGATCGTTTGTCTGGTATTGCTGCAAAGTACATTGGGAGGCCTATGCAAACACCAGCTTCTTTACATCCAATTTCAATGTCCTCCTTGGACCTGGGCATGGTAGGCTATGGAGCACAAAATGTGGGGCCTTCAGCTGATATTATCTCCCCAAGCCAATCTTTAGCTGAATTTGCGATGCCCACAGGCGTTGCTTTAGAGAAGAATCTAATGAGAGAGCTAGCAATTAATGCTATGGAAGAGGTCAGAAACTTGGCACACACAGACGAACCGCTGTGGATCAGAAATCTCAATGACAATAAAGACGTTCTCAGTTTGGAATGTTACACAAAGATATTTCCCAGAGCCATGGAGTCCAAGGCCTACAATGTCAGAAAGGAGGTATCGAGGGACTCCGGCTTGGTAATACTCAATGGACATTCACTGGCCGATATCTTCATGGACACGAATAAATGGGCTGAAATGTTTCCGACGATTGTGGCTAGAGCTAAAACAATAGAAGTTATAATCCCTGGAACTCCTGGGAACAGAAATGGCTCATTGCAGCTGATGTATGCCGAACTGCATGTTTTAGCTCACTTAGTTTTACCGCGTGAAATTTATTTCCTTCGTTATTGCCATCAATCTCCCGATGGAATATGGGCAATTGTAGATGTTTCTGTAGACAATATTATACAGAATCCACAAGCGTCGCTGTTACGCTGCCGCAAGCTTCCCTCAGGCCTTGTTATTCAAGAGATGCCCAATGGTTATTGTAAGGTTACTTGGGTAGAGCATGTGGAGCCTGAAGATCGAGCAGGCGTTCATCGCTTGTATCGACAACTAGTCAACAGCGGAATGGCATTCGGTGCGCATCGCTGGTTGGTGACTCTGCAGAGGAACTGCGAAAGGCTTACCAATCTCATGGCCGCTAGCATTTCTGCAAGAGAACCCGGAGTTTCTTCCCCAGATGAGCGGAGGTTCCTGATGAAGCTGGCGCAGCGTATGACGAGCACCTTCTGCGCCAACATTAGTGCGTCAACAGCCCAACGGTGGAGCGCTGCATCCGGATCAAATGATGACGGTGTTCGCCTTACTACGAGGAAAAACGCTAGTTCCACAGGCACTGTTCTCAGCGCTGCCACTTCTCTCTGGCTGCCAGTTTCTCCTCAGCGGTTGTTTGAATTTTTTAAAGATAAACGAAACAGGCCCCAGTGGGATGCAGTTTCTGGTGGGAATTCAACGGAGGAGGTTGTAGATTTTTCAAATGGGTCCCATCCTGGAAACTGCATTACTCTTTTGAGAGCTTACACTTCTATGCAGAATAACTTGTTTATTCTCCAGGAAAGTTGCACAGATACTTCGGGGTCCCTCATAGTGTATGCACCAGTTGACATAAATGCTATGAAGGCCGCAATGAATAGTGGGAGTGACCCATCTATCATACCCGTCCTTCCATCAGGCATCTCTATTCTGCCCGATGGTTCAGACAACAGGAGACTGCAGGCATCTTCTAGCAACAGCAGCAGTATTGGTAGCCCTGGCAATACAGGAGGAGGCTCATTATTGACGGTGGTATTCGAAATAAATGTTGGAAATTCACCCTCCTCAAACATGGAACCCCACGCCACAACTGTCAATCACATCGTCTGCAATGCGGTGCAACAAATCAAAGCAGCATTGCATTGTCTAGATGTCTGA___TGCAGCCATATGCTGCATCCCCCCTTTAATTACTTTGCTGTACACACTGATAACTTCATTTGAGTTTTTAACCATAGGCCTAACATCATCATCTGTGCGTCTTAGAATTTTACTTCTACAAGATAAATATCTAGGGGATTGGATAATTACAACGCACAGCTCACATTGAGCGGAGCGTTGGATTCCAACCTGTATGAGGCCCGAAGGAGAGAAATGTATTGGATGGCAGCAGCCAGCGTCCATTGCTAAACCGGGCTAATCTATATTTGGCTAGTACTACTTTTGCATAGGCAACCTTGGGGGAGTCAAGAACGCACCACACTCAATCTATCCTTGCTATGTGGTAAAGCTGTCAACAATTTTTATTATCATGCACAGACGACAGTCAGTACTCGCCTTCTGTCAAATTCCTGATGGAGAGAAGAGTGTTTAAATGCATGTGCTTCACCACACAGCAAGGGTAATGGTTCGGGCATTGACTTCCTGCCCACGATGTCAGGGAGGGGAAACAAATTGGCAAATTGCAATAAAACAACCGGTATTCATCTCGGAGTACTAAAGCTCCCTTTGATTCTTTTTGTGACAGACACTAACTAATTAGTTATCCAGTATAAT

Fln Alignment:

Contig3780___GSGSDQDAADQQNPARKRYHRHTAHQIQELEALFKKHPHPDEKQRLQLSRDLGLEPRQVKFWFQNRRTQMKAQGERADNNTLRAENERIRGENLAIREALKYVLCSNCGGPPA-GETSFEEQHRLRLENARLKEELDRLSGIAAKYIGRPMQTPASLHPISMSSLDLGMVGYGAQNVGPSADIISPSQSLAEFAMPTGVALEKNLMRELAINAMEEVRNLAHTDEPLWIRNLNDNKDVLSLECYTKIFPRAMESKAYNVRKEVSRDSGLVILNGHSLADIFMDTNKWAEMFPTIVARAKTIEVIIPGTPGNRNGSLQLMYAELHVLAHLVLPREIYFLRYCHQSPDGIWAIVDVSVDNIIQNPQASLLRCRKLPSGLVIQEMPNGYCKVTWVEHVEPEDRAGVHRLYRQLVNSGMAFGAHRWLVTLQRNCERLTNLMA-ASISAREP-GVSSPDERRFLMKLAQRMTSTFCANISASTAQRWSAASGSNDDGVRLTTRKNASS----TGTVLSAATSLWLPVSPQRLFEFFKDKRNRPQWDAVSGGNSTEEVVDFSNGSHPGNCITLLRA---YTSMQNNLFILQESCTDTSGSLIVYAPVDINAMKAAMNSGSDPSIIPVLPSGISILPDGSDNRRLQAXXXXXXXXXXXXXXXXXXLLTVVFEINVGNSPSSNMEPHAT-TVNHIVCNAVQQIKAALHCLD
Q8S555______________GSGDDQDAADNP-PRKKRYHRHTPQQIQELEALFKECPHPDEKQRLDISKRLNLETRQVKLWFQNRRTQMKTQLERHENSILRQENEKLRSENLSIRDAMRNPICTNCGGPAVLGEMSFEEQ-QLRIENARLKKELDRLCALAGKFFGRPVPSMPSVPLMPKSSLDLGVGGMPTSLPSGCADLM---HGPAGGRTGNIIGIERSMLAELALASMDELFKMAQADETLWIPNLDAGKETLNYEEYMRQFPSTITPKLIGLATEATRETGMVITNSLNLVETLMDVDRWKEMFPCMISRAAMVDVISSGMSGTRNGALQLMYAELQVLSPLVPAREVYFLRFCKQHAEGVWAVVDVSVDSLRDNSPAGFMKCRRLPSGCLIQDMPNGYSKVTWVEHAEYDDR-GVHRLYRSLLNSGMAFGAQRWLATLQRQCECLAILMATANVTARDPTAIRTPNGRRSMLRLAQRMTDNFCAGVSASTVHTWNKLSGNIDDDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIPKGQDPGNCVSLLKASAMNSNQSSSMLILQKTCTNASGSLVVYAPVDIPAMHVVM-SGGDPPYVALLPSGFAILPNGPKCRPL-ALNPSGNGVGVNSPRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCED

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
2442	66	33			0.997452
2445		33		66	0.997452
2446			33	66	0.997452
2449	83		16		0.994512
2455	83			16	0.994512
2461	83		16		0.994512
2462	83			16	0.994512
2468	85		14		0.993533
2470		85	14		0.993533
2472		14		85	0.993533
2475			85	14	0.993533
2476			14	85	0.993533
2482		14		85	0.993533
2484	85	14			0.993533
2485	14		85		0.993533
2506	88		11		0.923564
2507	88		11		0.923564
2508			11	88	0.923564
2562	81	18			0.999994
2579	10		90		0.90298
2582	10	90			0.90298
2882	75		25		0.996473
2883	25		75		0.996473
2913	75	25			0.996473
2915	75	25			0.996473
2953		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain