SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3755

Length: 2162 nt

UniGene Fasta

>sp_v3.0_unigene3755
CTTGTAAGAGTTACATTTGTTCGTCAAAGAAGCGCTGATTGGGGCATCTTTCGGCGGACGATTCCTTGAATTCAAAATTTCCAGAGCACCTATGGATTATGGTGACTCAGATAGCAGCGGAACAGCTGATGATCTTCCTCCTCATTCAAGTCGAATGCAAAGAGGAGGACGAGTATCTGGAAATGGCAAGTCTGCAGTACAGGAAATTCAGTTTGGAAGACAACACAATGATATGGAATCTCAGATTCATTTTCTTGAGAGGGAGGCCTACAGTGCTGTTTTGCGGGCTTTTAACTCACAGTCTGATGTAATTACCTGGGGTAAAGAGACATTAATGACCGAATTAAGGAAAGAACTAAGGGTTTCTGATGCGGAGCACAGGGAACTTCTAGGGAAAGTTAATGCAGACAGTGTACTTAGACAAATAAGACAATGGAGAGAGTCAGGCTTTCACCAACCAGGATTTACATCCAATGTTGTACCTCCTTCCGGTCCTACACACAGTCCCACTGTTTCAGTATCACAAAAGAAGCAAAAGACTACACATGTAATGTCAAGCATGCATTTACAGCCTCCACCAAATCGCCATCAGTCACCAGCTCCGTCATCATCAGTCCCATTTGCAGCAACATCGAAACAGGGAGATCCTCTGGGAGTTCGAGGCAGGAAATCCAAAGATCACTCGCAGCTGGTTGTGCCTACAGTAGTGAAACGTCGACCTGTTCCAACATCAGTTCCAGCATCTGGGATGGAACAAAATGTACATAAAAGACCACTGGGGAGGCCACCTGGAAAAAGTCATTCTGCGGTAGTAGCCAATGTTGATTCTTTGATAGGTCGAAAAGTGATGACGAGGTGGCCCCAGGACAATAATTTCTATGAGGCTATTATCACAGATTATAATCCTGAAATGGGAACACACGCATTGGTTTATGACTTTGAAACTCCAAAGGAGACATGGGAATGGGTTAATTTGAAAGAGATATCACCTGCAGATATTCGATGGGATGGTGCTCCTCCTGAAGGATTTGGTCAAGGATTTGGAAATGGCAATAAAAACTCAGTTGGTTATGGAGGTATATCACATTCTAATAAGGGGAGAGGTGCTCTCAAGGGCCAGTCTATAATAGACTCTACACCTTCACAAAATGACACAGGTAGAAGAGATCCAGGAGATATTGAGTTACGACAAACAGATAAACTTATAAAGGAGGTGGAAAGGCTCGTTGGAGTAAGTTATCCCGATCCTGCAGATTTCGACAAAGCTAAGAAGGTGTTAAAGGATCATGAATTATCTCTACTTGAAGCAATTGAGAGATTAGCTGAAGTGTCTGATGATGAGTATGACACTGAAGACGATGCCAGGGGAGAAGGCTCAGACAGAGAGCCTTTTGTTGGGGAAGGTGGTGTAGCTTCAGACAACATGCAAGATGGATACGATGCAGATGAATATGGTTGATTATTTGAGATTCAATTTCAAACAAATCTTTAAAGATTTTCTTATGGGAAAGCTCATGATTGATTGGCTACTGGATAACACAACGAAGGCATGGTGATAAGTGCTCGGGTTCTTTTGTTAACAATGCCTGGTCACCTTCAAATTAATTCTGATTTCTCTCTTGAAATAAATTACTCGACATGCTAAAGCACTAGAGCAGGCCTCTTTGAGAAGTTTCAAAATCTTCCAATGTGGCGGGAGGGACGTGCAGAGATTGTCCCTCTTTCCTTGGTACGAAAACAGGAGCTTTCATTTTAGTGCAATTCTTGACTTCTTTGTAAGAAATTGGAGGAATTGTATTTTGATATCTGAATGCTAACCAACATTTAAACTTAATGCTTTGTTACTTCTGGGTGGTTTCGTTGATTGTATCTCTTCGGAGGAGTTACGAAGCCAGTTGTAGGAGGAGAAAACCCCAAATTTTGCTGTGGTGTAATATAACTTGGCATAGAGTACACAGCATGAGTAAGGGTACCATAGCTTTCCCAATATGCAAACTGACTTGTCTCTTTGTATGAGATATTTTTTGCATAGACTGAATTGCACATTTTTTTAAGTTGTCGAATCTTCAACAGTTTGGCTAAACGAAGTAACAGTCGGGAGTCGAGAAGTTGGCGACAATGCATACGTTTATTAATGCGAACCTCTTATGTCGATGCAATAT

Ace file of the UniGene sp_v3.0_unigene3755

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana] gb\|AED91842.1\| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	ENT domain containing protein	-	-	4.413e-12	-

Source	Gene names
Sma3	24K23.15; At3g12140; At5g06780; GSVIVT00003740001; GSVIVT00024705001; GSVIVT00025367001; OSIGBa0132E09-OSIGBa0108L24.15; OSJNBa0011F23.19; OSJNBa0015K02.6; OSJNBa0049I01.19; Os04g0659400; Os08g0328300; Os09g0279000; OsI_17760; OsI_28808; OsI_30674; OsJ_16

Source	GOs	Term	Type	e value	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tudor-like, plant	IPR014002	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein chr5:4129691-4132089 REVERSE LENGTH=397	46%
RefSeq	Arabidopsis thaliana	NP_196806.2	Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002330852.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA46

Fln msg: your sequence is shorter than subject: 456 - 497

Fln protein: MDYGDSDSSGTADDLPPHSSRMQRGGRVSGNGKSAVQEIQFGRQHNDMESQIHFLEREAYSAVLRAFNSQSDVITWGKETLMTELRKELRVSDAEHRELLGKVNADSVLRQIRQWRESGFHQPGFTSNVVPPSGPTHSPTVSVSQKKQKTTHVMSSMHLQPPPNRHQSPAPSSSVPFAATSKQGDPLGVRGRKSKDHSQLVVPTVVKRRPVPTSVPASGMEQNVHKRPLGRPPGKSHSAVVANVDSLIGRKVMTRWPQDNNFYEAIITDYNPEMGTHALVYDFETPKETWEWVNLKEISPADIRWDGAPPEGFGQGFGNGNKNSVGYGGISHSNKGRGALKGQSIIDSTPSQNDTGRRDPGDIELRQTDKLIKEVERLVGVSYPDPADFDKAKKVLKDHELSLLEAIERLAEVSDDEYDTEDDARGEGSDREPFVGEGGVASDNMQDGYDADEYG*

Protein Length: 457

Fln nts: CTTGTAAGAGTTACATTTGTTCGTCAAAGAAGCGCTGATTGGGGCATCTTTCGGCGGACGATTCCTTGAATTCAAAATTTCCAGAGCACCT_-_ATGGATTATGGTGACTCAGATAGCAGCGGAACAGCTGATGATCTTCCTCCTCATTCAAGTCGAATGCAAAGAGGAGGACGAGTATCTGGAAATGGCAAGTCTGCAGTACAGGAAATTCAGTTTGGAAGACAACACAATGATATGGAATCTCAGATTCATTTTCTTGAGAGGGAGGCCTACAGTGCTGTTTTGCGGGCTTTTAACTCACAGTCTGATGTAATTACCTGGGGTAAAGAGACATTAATGACCGAATTAAGGAAAGAACTAAGGGTTTCTGATGCGGAGCACAGGGAACTTCTAGGGAAAGTTAATGCAGACAGTGTACTTAGACAAATAAGACAATGGAGAGAGTCAGGCTTTCACCAACCAGGATTTACATCCAATGTTGTACCTCCTTCCGGTCCTACACACAGTCCCACTGTTTCAGTATCACAAAAGAAGCAAAAGACTACACATGTAATGTCAAGCATGCATTTACAGCCTCCACCAAATCGCCATCAGTCACCAGCTCCGTCATCATCAGTCCCATTTGCAGCAACATCGAAACAGGGAGATCCTCTGGGAGTTCGAGGCAGGAAATCCAAAGATCACTCGCAGCTGGTTGTGCCTACAGTAGTGAAACGTCGACCTGTTCCAACATCAGTTCCAGCATCTGGGATGGAACAAAATGTACATAAAAGACCACTGGGGAGGCCACCTGGAAAAAGTCATTCTGCGGTAGTAGCCAATGTTGATTCTTTGATAGGTCGAAAAGTGATGACGAGGTGGCCCCAGGACAATAATTTCTATGAGGCTATTATCACAGATTATAATCCTGAAATGGGAACACACGCATTGGTTTATGACTTTGAAACTCCAAAGGAGACATGGGAATGGGTTAATTTGAAAGAGATATCACCTGCAGATATTCGATGGGATGGTGCTCCTCCTGAAGGATTTGGTCAAGGATTTGGAAATGGCAATAAAAACTCAGTTGGTTATGGAGGTATATCACATTCTAATAAGGGGAGAGGTGCTCTCAAGGGCCAGTCTATAATAGACTCTACACCTTCACAAAATGACACAGGTAGAAGAGATCCAGGAGATATTGAGTTACGACAAACAGATAAACTTATAAAGGAGGTGGAAAGGCTCGTTGGAGTAAGTTATCCCGATCCTGCAGATTTCGACAAAGCTAAGAAGGTGTTAAAGGATCATGAATTATCTCTACTTGAAGCAATTGAGAGATTAGCTGAAGTGTCTGATGATGAGTATGACACTGAAGACGATGCCAGGGGAGAAGGCTCAGACAGAGAGCCTTTTGTTGGGGAAGGTGGTGTAGCTTCAGACAACATGCAAGATGGATACGATGCAGATGAATATGGTTGA___TTATTTGAGATTCAATTTCAAACAAATCTTTAAAGATTTTCTTATGGGAAAGCTCATGATTGATTGGCTACTGGATAACACAACGAAGGCATGGTGATAAGTGCTCGGGTTCTTTTGTTAACAATGCCTGGTCACCTTCAAATTAATTCTGATTTCTCTCTTGAAATAAATTACTCGACATGCTAAAGCACTAGAGCAGGCCTCTTTGAGAAGTTTCAAAATCTTCCAATGTGGCGGGAGGGACGTGCAGAGATTGTCCCTCTTTCCTTGGTACGAAAACAGGAGCTTTCATTTTAGTGCAATTCTTGACTTCTTTGTAAGAAATTGGAGGAATTGTATTTTGATATCTGAATGCTAACCAACATTTAAACTTAATGCTTTGTTACTTCTGGGTGGTTTCGTTGATTGTATCTCTTCGGAGGAGTTACGAAGCCAGTTGTAGGAGGAGAAAACCCCAAATTTTGCTGTGGTGTAATATAACTTGGCATAGAGTACACAGCATGAGTAAGGGTACCATAGCTTTCCCAATATGCAAACTGACTTGTCTCTTTGTATGAGATATTTTTTGCATAGACTGAATTGCACATTTTTTTAAGTTGTCGAATCTTCAACAGTTTGGCTAAACGAAGTAACAGTCGGGAGTCGAGAAGTTGGCGACAATGCATACGTTTATTAATGCGAACCTCTTATGTCGATGCAATAT

Fln Alignment:

Contig3755___MDYGDSDSSGTADDLPP-HSSRMQRG-GRVSGNGKSAVQEIQFGRQHNDMESQIHFLEREAYSAVLRAFNSQSDVITWGKETLMTELRKELRVSDAEHRELLGKVNADSVLRQIRQWRESGFHQPGFTSNVVPPSGPTHSPTVSVSQKKQKTTHVMSSMHLQPPPNRHQXXXXXXXXXXXXXXKQGDPLGVRGRKSK-DHSQLXXXXXXXXXXXXXXXXASGMEQNVHKRPLGRPPGKSHSAVVANVDSLIGRKVMTRWPQDNNFYEAIITDYNPEMGTHALVYDFETPKETWEWVNLKEISPADIRWDGAPP----EXXXXXXXXXXKNSVGYGG-ISHSNKGRGALKGQSIIDSTPSQNDTGRRDPGDIELRQTDKLIKEVERLVGVSYPDPADFDKAKKVLKDHELSLLEAIERLAEVS------------------------------------DDEYDTEDDARGEGSDREPFVGEGGVASDNMQDGYDADE
D5AA46______________MDYGQSDSSGTDDDLPPSHQNRIARGAGRISGNGRSSAGP-PYARMQNEMERQIHWLEQEAYSSVLRAFKAQSDAITWAKEGLMSELRKELRVSDEEHRELLGRVNADDLLKRIREWRQGGANQGGLMSTAAPDHDPTPSPSVSASRKKQKTAHILPSLPMPSQSTLHPLSVGAPSQPSSSAAKRGTPVGAKNKKPKTNQTMAVVSPPVKPQQFQPAVPVAGRVQIANRGPPG-PSGLSEPPEAATVDPLIGRKVRTRWPEDNNFYEAVITDYNPQQGLHALVYDINTTRETWEWVNLKEITPGDIMWDWEGPAGSGRGSRGAVGRGIKKSSGRGGLVSTTGRGRGISKGQPRKDFAPSQNGIGKKVPGDIEILHTDTLLKEVERIFGGPQPDPADMEKAKKLLKEHEQSLVDAIARLAEASDGESEDGRHPLPSHTHSIDRERGWRNMQYNGNQHTADDEDDTAGDGRAEGSDGEPMIGEGGVASDDQQDGDDGDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain