SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3738

Length: 2866 nt

UniGene Fasta

>sp_v3.0_unigene3738
GCAATGCTCGGTCAACATTTGAGCAAGCTCGCTTCAATCTAGTGAGTGCACTTTCAAGTATCGAGTCCAAGAAAAGGTTTGAATTCTTGGAAGCTGTAAGTGGGACAATGGATGCCCATCTCCGTTATTTTAAGCAGGGTTATGAGTTGCTGCACCAGATGGAACCATACATTCACCAGGTATTAACATATGCACAACAGTCGAGAGAAAGGACAAACTATGAGCAAGCAGCACTTGCAGAGAGGATGCAGGAATTTAAAAGGCAGATAGATCGGGAAAGTCGGTGGTCTTTTAGTGGTGCACAAAATTCCCCAACTGGGGATGGGATCCAGGCTGTTGGAAGGAGTTCACATAAAATGATTGAAGCAGCCATGCAGTCAACTGTAAAAGGAAAGGTCCAGACAATCAGGCAAGGTTATCTATCAAAGCGTTCCTCAAATTTGAGAGGTGATTGGAAGAGGAGATTCTTTGTTCTTGATAGCCGTGGACTTTTGTACTATTACCGTAAACAATGGGGAAAACCAATGGGAACCACAAGTCAGCACTCTGCTCAAAGGGGACATCATGCAACTGATCATGTATCTGGCTTATTTGGTCGTTTGCTTTCATCTCACCACCATGGGACATCATCTCACCACCACGGGACATCGCAAGATGAGAAGTCCATTCCATATCATGCTGTTAATCTGCTTACGTCAACTATTAAGGTGGATGCAGAACAGACAGATTTGCGGTTTTGTTTCAGAATAATTTCACCATCAAAACACTATACTTTGCAGGCAGAGAGTGCAATAGATCGTATGGATTGGATTGAGAAAATAACAGGAGTAATTGCTTCACTTCTGTGTTCTCAAATGCCAGAGCAGAAGCTGCCTTGCAGTCCAATGAGCAGTGGACATCAACGTACAGCCAGTGAGAGCAGCTCATTGGGCAGCTCTTCTGATTTTGATCACACAATACCTGAAGACAATGCATTACAGAATTTTAATCTTATAGGACATCGTGACCATTCGGGCAGAGGTTTGCAGGGTTTCAGGACACATGGCAAGCTGGAGAGCCCCCTTGAGCTTTTTAGAAAGGTTCCCGGAAATAATGTTTGTGCAGATTGTGGTTCACCTGAACCAGACTGGGCCTCACTGAACCTTGGTGTGTTACTTTGCATCGAATGTTCAGGGGTTCACCGCAACCTTGGTGTACATATATCAAAGGTCAGGTCTTTAACCCTTGATGTTAAGGTTTGGGAGCCTTCTGTTATCAACTTGTTCCAATCTCTTGGTAATACTTATGCGAACTCAGTATGGGAGGAGCTTCTAGAATCTGAGAGGAATTTGAGAGAAGATGGTACCTGTGGCAGGCGAGTCACGCTTGAAGAAGAAATATATCATGTACCTATTACCAAACCAGATGATAGAGATAGCCTTTCAACAAAGGAGAAGTTCATCCAGGCAAAGTATGCTGGAAAACGTTTTGTACACAAACCAAAGCCAGATCCTCGGGCACCATCAATTGCTTGTCAAATATGGGATGCTGTCCTTGAAAATAACAAGCAGTTAGCATACCGTCTTATAGTGAATTCCAATGCTGATGTTAATACAACATATGAGCAGGCAAAGGCCAATTGTTCCTTGCTTTTAGCAAAAGCAGTAATCACTAGAAGGAATCGAAACACAATGCAAAACGATTCTGGTTGTAGTGGGCACATACAACTATCTGATTCGGCAACATCTAGCCCAAGCTCCATGACTGACAGTGAGGATTTAAGCGAAGTAGAGGAGGGTCTACAACGATGCTCATTGTTACATCTAGCATGCTATACTGGTGATCTAGGCATGGTAGAGCTACTGCTGCAGTATGGTGCCATTCTGAATGCTCCTGACTATTGTGGAAGAACTCCACTTCATCTTTGTATCTCTAGGAGGATGATCCCATTTGCAAAATTGCTGATTTCTAGGGGTGCCAGTACAGCAGTTTTCGATGGAGATGGTAAAACCCCACTACAAAGATTAAAAGAAATGGGTATTACTGCAGATGACGAACTATTTGGTCTCTTGTCTGAACCGAACAGATAGGTTCAGATAATCTTAGCTGTGGTACGATCATTGTGTATGTGAGAAGCAGGGCTTTCCATTTCTTTGATGTATTATAGTACCCATTCTTGGTCGAGTACGGGTTGTCCAGTTCTTCCAAGAATGCTCATCGAGAATCAGTTGGGTGATGGTCTTATGATGAGCTTATTATAATATTTTCCTTGTTTTATCCTTAAATCTGTTCATACGGCTATAGAGAAAGTTATAGAGCTGAAAAGCATGTTCTCCAGCATGTATAATCCAATTTTTCATCTCAATCCTCTTCATTTGTTTGGTTGGTCAGGCATTGCTCAATGCCTCCTCCCTTTATATCCCAACTTTCTTTCACATTAGAATTTGTGATTCGTTTGTTTCTGCACACAACATTCTACATTATTTGTGTGCCACAAAATTAGAGTTCTGTTTGTTTCTATTTGTAATTTTATGCCCTACTGTGCAGTCCTTTTCTATAAAGGAATTACAGTTGCGAGGATACAAAATGTTGAAAATCGTAAAGGATATATTGTGCTTGAAAAAAGGGGTTCGCATCCTTTCAGTAATATTGTATCTCAATTTTGCTAGTATTGAAGCCATGTCTCTAAATATTTGTTTGTGCCCAAGTTTGTCTGCTCAGAGGGCTGGTTCATACACAGGAATGATTGGTCCTTTGAGTATTTAAGGGTCCAATGCAGGGTTCGCATTGGTCGAATTCCGCACAATCGTTGGTCAGCATTTTTGTGTAATTGACAAAGCGAGCTTCATTTGCTTTTACTGAAAAGCATCGTTAGATACTTCATGTG

Ace file of the UniGene sp_v3.0_unigene3738

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor GTPase-activating protein AGD3 [Arabidopsis thaliana] sp\|Q5W7F2.1\|AGD3_ARATH RecName: Full=ADP-ribosylation factor GTPase-activating protein AGD3; Short=ARF GAP AGD3; AltName: Full=Protein ARF-GAP DOMAIN 3; Short=AtAGD3; AltName: F	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Gcn4-complementing protein, putative	-	-	3.385e-08	-

Source	Gene names
Sma3	AGD1; AGD2; AGD3; AGD4; At1g10870; At1g60860; At5g13300; At5g61980; B1250G12.27; F23C21.2; GCP1; GSVIVT00006190001; GSVIVT00018032001; GSVIVT00018033001; GSVIVT00021248001; GSVIVT00037052001; K22G18.9; MICPUCDRAFT_12116; MICPUN_87402; OJ1643_A10.2; Os02g0

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	trans-Golgi network transport vesicle	GO:0030140	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ARF GTPase activator activity	GO:0008060	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	phosphatidylinositol binding	GO:0035091	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	regulation of ARF GTPase activity	GO:0032312	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	BAR domain	IPR004148	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13300.1	SFC, VAN3, AGD3 ARF GTPase-activating protein chr5:4255923-4262018 REVERSE LENGTH=827	59%
RefSeq	Arabidopsis thaliana	NP_196834.3	ADP-ribosylation factor GTPase-activating protein AGD3 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002303749.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 40 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is longer than subject: 654 - 370

Fln protein: MDAHLRYFKQGYELLHQMEPYIHQVLTYAQQSRERTNYEQAALAERMQEFKRQIDRESRWSFSGAQNSPTGDGIQAVGRSSHKMIEAAMQSTVKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQWGKPMGTTSQHSAQRGHHATDHVSGLFGRLLSSHHHGTSSHHHGTSQDEKSIPYHAVNLLTSTIKVDAEQTDLRFCFRIISPSKHYTLQAESAIDRMDWIEKITGVIASLLCSQMPEQKLPCSPMSSGHQRTASESSSLGSSSDFDHTIPEDNALQNFNLIGHRDHSGRGLQGFRTHGKLESPLELFRKVPGNNVCADCGSPEPDWASLNLGVLLCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVINLFQSLGNTYANSVWEELLESERNLREDGTCGRRVTLEEEIYHVPITKPDDRDSLSTKEKFIQAKYAGKRFVHKPKPDPRAPSIACQIWDAVLENNKQLAYRLIVNSNADVNTTYEQAKANCSLLLAKAVITRRNRNTMQNDSGCSGHIQLSDSATSSPSSMTDSEDLSEVEEGLQRCSLLHLACYTGDLGMVELLLQYGAILNAPDYCGRTPLHLCISRRMIPFAKLLISRGASTAVFDGDGKTPLQRLKEMGITADDELFGLLSEPNR*

Protein Length: 655

Fln nts: GCAATGCTCGGTCAACATTTGAGCAAGCTCGCTTCAATCTAGTGAGTGCACTTTCAAGTATCGAGTCCAAGAAAAGGTTTGAATTCTTGGAAGCTGTAAGTGGGACA_-_ATGGATGCCCATCTCCGTTATTTTAAGCAGGGTTATGAGTTGCTGCACCAGATGGAACCATACATTCACCAGGTATTAACATATGCACAACAGTCGAGAGAAAGGACAAACTATGAGCAAGCAGCACTTGCAGAGAGGATGCAGGAATTTAAAAGGCAGATAGATCGGGAAAGTCGGTGGTCTTTTAGTGGTGCACAAAATTCCCCAACTGGGGATGGGATCCAGGCTGTTGGAAGGAGTTCACATAAAATGATTGAAGCAGCCATGCAGTCAACTGTAAAAGGAAAGGTCCAGACAATCAGGCAAGGTTATCTATCAAAGCGTTCCTCAAATTTGAGAGGTGATTGGAAGAGGAGATTCTTTGTTCTTGATAGCCGTGGACTTTTGTACTATTACCGTAAACAATGGGGAAAACCAATGGGAACCACAAGTCAGCACTCTGCTCAAAGGGGACATCATGCAACTGATCATGTATCTGGCTTATTTGGTCGTTTGCTTTCATCTCACCACCATGGGACATCATCTCACCACCACGGGACATCGCAAGATGAGAAGTCCATTCCATATCATGCTGTTAATCTGCTTACGTCAACTATTAAGGTGGATGCAGAACAGACAGATTTGCGGTTTTGTTTCAGAATAATTTCACCATCAAAACACTATACTTTGCAGGCAGAGAGTGCAATAGATCGTATGGATTGGATTGAGAAAATAACAGGAGTAATTGCTTCACTTCTGTGTTCTCAAATGCCAGAGCAGAAGCTGCCTTGCAGTCCAATGAGCAGTGGACATCAACGTACAGCCAGTGAGAGCAGCTCATTGGGCAGCTCTTCTGATTTTGATCACACAATACCTGAAGACAATGCATTACAGAATTTTAATCTTATAGGACATCGTGACCATTCGGGCAGAGGTTTGCAGGGTTTCAGGACACATGGCAAGCTGGAGAGCCCCCTTGAGCTTTTTAGAAAGGTTCCCGGAAATAATGTTTGTGCAGATTGTGGTTCACCTGAACCAGACTGGGCCTCACTGAACCTTGGTGTGTTACTTTGCATCGAATGTTCAGGGGTTCACCGCAACCTTGGTGTACATATATCAAAGGTCAGGTCTTTAACCCTTGATGTTAAGGTTTGGGAGCCTTCTGTTATCAACTTGTTCCAATCTCTTGGTAATACTTATGCGAACTCAGTATGGGAGGAGCTTCTAGAATCTGAGAGGAATTTGAGAGAAGATGGTACCTGTGGCAGGCGAGTCACGCTTGAAGAAGAAATATATCATGTACCTATTACCAAACCAGATGATAGAGATAGCCTTTCAACAAAGGAGAAGTTCATCCAGGCAAAGTATGCTGGAAAACGTTTTGTACACAAACCAAAGCCAGATCCTCGGGCACCATCAATTGCTTGTCAAATATGGGATGCTGTCCTTGAAAATAACAAGCAGTTAGCATACCGTCTTATAGTGAATTCCAATGCTGATGTTAATACAACATATGAGCAGGCAAAGGCCAATTGTTCCTTGCTTTTAGCAAAAGCAGTAATCACTAGAAGGAATCGAAACACAATGCAAAACGATTCTGGTTGTAGTGGGCACATACAACTATCTGATTCGGCAACATCTAGCCCAAGCTCCATGACTGACAGTGAGGATTTAAGCGAAGTAGAGGAGGGTCTACAACGATGCTCATTGTTACATCTAGCATGCTATACTGGTGATCTAGGCATGGTAGAGCTACTGCTGCAGTATGGTGCCATTCTGAATGCTCCTGACTATTGTGGAAGAACTCCACTTCATCTTTGTATCTCTAGGAGGATGATCCCATTTGCAAAATTGCTGATTTCTAGGGGTGCCAGTACAGCAGTTTTCGATGGAGATGGTAAAACCCCACTACAAAGATTAAAAGAAATGGGTATTACTGCAGATGACGAACTATTTGGTCTCTTGTCTGAACCGAACAGATAGGTTCAGATAATCTTAGCTGTGGTACGATCATTGTGTATGTGAGAAGCAGGGCTTTCCATTTCTTTGATGTATTATAGTACCCATTCTTGGTCGAGTACGGGTTGTCCAGTTCTTCCAAGAATGCTCATCGAGAATCAGTTGGGTGATGGTCTTATGATGAGCTTATTATAATATTTTCCTTGTTTTATCCTTAAATCTGTTCATACGGCTATAGAGAAAGTTATAGAGCTGAAAAGCATGTTCTCCAGCATGTATAATCCAATTTTTCATCTCAATCCTCTTCATTTGTTTGGTTGGTCAGGCATTGCTCAATGCCTCCTCCCTTTATATCCCAACTTTCTTTCACATTAGAATTTGTGATTCGTTTGTTTCTGCACACAACATTCTACATTATTTGTGTGCCACAAAATTAGAGTTCTGTTTGTTTCTATTTGTAATTTTATGCCCTACTGTGCAGTCCTTTTCTATAAAGGAATTACAGTTGCGAGGATACAAAATGTTGAAAATCGTAAAGGATATATTGTGCTTGAAAAAAGGGGTTCGCATCCTTTCAGTAATATTGTATCTCAATTTTGCTAGTATTGAAGCCATGTCTCTAAATATTTGTTTGTGCCCAAGTTTGTCTGCTCAGAGGGCTGGTTCATACACAGGAATGATTGGTCCTTTGAGTATTTAAGGGTCCAATGCAGGGTTCGCATTGGTCGAATTCCGCACAATCGTTGGTCAGCATTTTTGTGTAATTGACAAAGCGAGCTTCATTTGCTTTTACTGAAAAGCATCGTTAGATACTTCATGTG

Fln Alignment:

Contig3738___GFRTHGKLESPLELFRKVPGNNVCADCGSPEPDWASLNLGVLLCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVINLFQSL-GNTYANSVWXXXXXXXXXXXXDGTCGRRVTLEEEIYHVPITKPDDRDSLSTKEKFIQAKYAGKRFVHKPKPDPRAPS
B8LLJ7______________GYKSSGSMRRLKDLLAQ-PDNQVCADCCSPDPRWASTSIGVFICIKCSGVHRSLGVHISKVLSVTLD--EWTGDQVDAMIDVGGNASANAIY-----------------------ESLLPENFEKPGPEASSEERSNFIRHKYELQEFV---KPSLRTVS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
866		11	88		0.923564
868	88			11	0.923564
869			88	11	0.923564
1399	85			14	0.993533
1400	85			14	0.993533
1408	71		28		1.0
1446			88	11	0.923564
1448	88			11	0.923564
1449	88			11	0.923564
1453	88			11	0.923564
1455		11	88		0.923564
1456		88		11	0.923564
1461	88		11		0.923564
1946	16			83	0.994512
1948			16	83	0.994512
1949		83	16		0.994512
1950			20	80	0.995493
1994	16	83			0.994512
1996		66	16		0.988813
2063	90			10	0.90298
2064		90	10		0.90298
2065	90		10		0.90298
2177		77		22	0.999999
2201	77		22		0.999999
2345	90			10	0.90298
2484	87		12		0.992554
2567	85		14		0.993533
2683		80		20	0.995493
2706		57		28	1.0
2708			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain