SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3735

Length: 3987 nt

UniGene Fasta

>sp_v3.0_unigene3735
GAATTTTTGAGTATTTCGTTGTATGCGGGCTGGGCCCCGAGCTTCGATCTCTGGACGGCGCCAAGGGTTTCCAAGGGACACATGCCATGTACATGCCTTCTGTTTTGGACCAGTTCCCTTCTTCCAAGGACTCTGATTGTCCGCCTCCTCCTCCTCAGCTTTCAACTTGCGTGATGCCAGCAGGAGTGGCGTTCTATTCCTCAGGCTTCAGCGCCAGCGATAAATCCAGCCATCCCCACAGTTATCCGATAGTATTGACAGAGGGAGATGGAACTAAAATCTATGTCAGCTGTGTTGCTTTTCGGAATCCAGTCAGTGATGATATTGCTGAGGCCTATCGAATTCCTCCAAATTCTTTTGTGGACAAATGTATCTGCCTGGTTTCACATTCACCTAGTTTTCATGTCCTTCGAGAAGCTGCAGAGGAACTGTTCCGTTTATCTTTCTCACCTTCTGGTTGCAGCAAGCCAATATGGGAAATTGTGATGCATTTGGTTCTTAACGTTCCTCTACCAAGTCCAGGAAAGAACTGCATTTTATTTTCTATAGAGAATACTCTTCTCTCCGTGGAGGTACCGCCCAAGGATGGACTTCCTCATGCTGATATTCCTTTTCATCCACTGGTGCAGTGCTTGGATGTTGACAACCTAATTCGACTTTTTACTGCTGTTCTTCTTGAAAGGCGAATTCTACTTCGTGCAAACAAGTACTCATTACTAACTCTTGTATCAGAAGCTATTTGCCATTTAATCTATCCATTTAAGTGGCAGCATAATGACATTCCACTGCTGTTTTTTAGTGGAGTCGACTATATTGATGCTCCAACACCATATATGATGGGTCTTCCCTCAGGAGTTGACACATCTGATCTTACTATGGATGGTGTGGTTGTTGTGGACCTTGATTACAATCGTATAACAACATCAGAGGATATTCCCTCAATACCTGACCCAGAATTGGGTCATCTACGAACAGAATTAATGCACTTGCTGTACCCAAATCTTATGGATTTAGATCATATGCAAACGACTGCTGGAGGGCTTTTTGGAGATTTCCATAGACGCAATAATAAGTCTTGGGGGGAGCAACACGACTTGGAACTCAGAATGATATTCCTGAAGTTTTTCGCATCAATCCTTAGTGGTTATCGCAACTTTGTGGAGAATACAGCAGCACGGGTGTTCAATACACAGGCTTTCCTGAAAAAGCGATCTCGCACTACGAACCGCCCACCTGAGTCCATGGTAGTCCAGTTTTTAGATTCACAGGGTTTCTTTGAATTCCTGGAGAGAAGCCATGGATCAGAGGAGTCTGGGCATAATCTCCTAGACAAGCTACAAGATGCAATAGCTAGAGGCCAAAACCCTTATTCTGTGCTACCAGATACCACAAGCGAGCTAGAGATTATTACTATAGCAGACCCATCTGGTGGAACTGCAGTTTCAGGTGCTCCATACTATTATGATCGTTTCCCTGCCAATGCTAGGTCTCAAGATCAAGAAGATAAACGGAAAGCAATTCTGGCTGCTGCAAGTGCAGCGTTGGAACATCCCAACAGGCATATCCTAAGTCCAAGATTGGATATAACAGGACAGAATTTTGCCAGAGCAGGAAGTTTGAGCCCAAGGGAGAGAGCTGCAGAAAGAGAACGCATGGTTCTTGACATAAAGGTCAAGTTACAGGGACTTTGGATGCGCCTGCTTAAGCTGGGTGCAACTGACGATCCGCTTTCTTCATTCGAGTATGGGACAATTCTTGCTCTAATTGAGTCAGATGCAGAAGGTATTGGCGGAAGTGGATTTGTTGAATGCATCAGGGAGCATATTCACTCGGGATGGCATTGCCAATTGACAGAGGAGCAGTTCATTGCAGTGAAGGAGTTGCTTAAGACAGCAATAAGCCGTGCCGTTGCCAGAGACGACATGGTTACTGTCAGAGATGCCTTGGAAACTTCTGCTGAAATATATAAGAGAGATGGTAATAATGTACCAGATTACGTTCAACGCCATTTGAGTACTCTTCATGCCTGGTGGGAACTGCGATTTTGGGAAGGATATTTTGAGAGCATCATGGAGAAAGCCTCAGACAAGTTGGCCAACTATGCTACATTAGTCACTGAACAACTTGTTATAATTGTGTCTCATCTGGCTGGTTTAGGAATACCTGATGAAGAGGCCTGGTTCATAGTGGAATCAATTGCACAAAAGAACAATCTTGGATACAAGCAACTTATTAAGCTGAGGGGCTTATTGTGTTATTTGCAACAAGTGCGACAAGACTATTATGGTATCCTACAAGGACGGATACAATCATTGTCATCCTCTGTGCACAACCTACCCACTCAGCAACCACATGATGCCGCAGATGAAACTCAACAGCCAGCTGAAGCATCTGGTCTAGGACGGAGTTGGGTACAAAGCATGTTCAGTCGAGATCCAGCTACCCGTAGACCGCCTGCTGCTCGTGTGCAAAGAGGAGCATCTGACAGTGGTGTTCTAGTTGCCAATGAGAACATTCAGAATGCTGTACCACCACGGAAAGTAGAGATACCCCCCATTGGGCCAAAAAGGGGCTATTCAGGTGTGCGTATACTTAGGGGTCATAAGGGTTCTATTACTGCTCTCCATGCAGTGACAAGACGTGAAGTATATGATCTCACAAGTGATCAAGAGGATGCTGGATATTTCATTAGTGGGAGTGCTGATTGCACAGTCAAATTATGGGATCCAAGCCATCGTGGATCAGAACTTAAAGCAACCTTAATAGGGCATACCAGGGCAATTCGCGCCATTAGCTCTGACAAAAGTCGAGTTGTCTCTGGCTCTGATGATCAGTGTGTGTTTGTTTGGGATAAACAAACTTCTGGAGTTTTGGAAGAACTCAAGGGACATGACGCTCAGGTCAGCTGTGTAAAAATGCTTTCAGGAGAGCGTGTGCTTACTGCTTCTCATGATGGAAGTGTTAAGATGTGGGATGTTAGAACTGATACTTGTGTAGCAACAGTTGGCCGTGCTTCAAGTGCAATTCTATGTATGGAGTATGATGACAACACTGGAATTTTAGCTGCTGGTGGAAGGGATGCGGTTGGGAATATATGGGACATTCGAGCTGGAAGACAAATGCAGAAGCTTGTAGGGCACACAAAATGGATCCGAACCTTGAGAATGGTTGGAGACACGATTATCACTGGGAGCGATGATTGGACTGCTAGAGTATGGTCTGTATCTGATGGACATTGTGATGCTGTGCTTGCATGCCATGCTGGCCCAATAACTAGTGTTGAATACTGTGCATCTGACAATGGAATAATCACAGGTTCCGAAGATGGTATGGTGCGTTTATGGAACATTGGAGATGGATCATTGCAATGTGTGAAAAATGTCAGCATACATTCATCGGCTATACTGTCAATCAAGACTGCAGATCAGTGGTTAGCTATTGGTGCTGCAGATAATTCTATGTCTCTCTTCCATCGACATGAACAGAGACAAGGTGTTCTTGCTGGTACAGGTGATAGGATGGCTGGCTGGCAATTGTATCGAACTCCACAACGCAGTGCTGCTGTGGTCCGATGTGTAGCTTCTGATATTGACAGGGGCAGAATCTGCAGCGGTGGTCGCAATGGAATTCTTCGGCTTTGGGAACCAATGGTGCAAACATGACAGTTGTACCATAAACTCATTTGCAATATTAGTCTGCAAACAAGCAAGAAAACACCATTCTATTTCTTGTGAGGTATAAGGGACATATTTTGGCATGCATGAAGAGACCATCATGACATGTATGATTATTGTATTGTATGAAGTGAAAAGGCATAGCTTATTGAGTTTGCATTTGCAATTTTGAAATGTAGCTGTATAATATATAACCAAAATGATATGATTCTAAATTTTAGCATATTTTGGATGAACTTAAGCAGCTGCATGCTTATTTTTGTATGGAAGTTTGCTTCTTGTAGATTTATGTTCATTACACTTTCATAGCTAC

Ace file of the UniGene sp_v3.0_unigene3735

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	9.0e-34	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Source	Gene names
Sma3	At1g49040; GSVIVT00017648001; Os01g0575500; OsI_02530; OsJ_02315; PHYPADRAFT_65344; POPTRDRAFT_580285; POPTRDRAFT_823307; POPTRDRAFT_835082; RCOM_1617450; VITISV_022618;

Source	GOs	Term	Type	e value	Identity
Sma3	multidimensional cell growth	GO:0009825	Biological Process	0.0	-
Sma3	guard mother cell cytokinesis	GO:0010235	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	DENN	IPR001194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	dDENN	IPR005112	-	-
Sma3	uDENN	IPR005113	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G49040.1	SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) chr1:18139419-18148826 REVERSE LENGTH=1187	63%
RefSeq	Arabidopsis thaliana	NP_850959.1	stomatal cytokinesis defective / SCD1 protein (SCD1) [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002322040.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 1192 - 314

Fln protein: MYMPSVLDQFPSSKDSDCPPPPPQLSTCVMPAGVAFYSSGFSASDKSSHPHSYPIVLTEGDGTKIYVSCVAFRNPVSDDIAEAYRIPPNSFVDKCICLVSHSPSFHVLREAAEELFRLSFSPSGCSKPIWEIVMHLVLNVPLPSPGKNCILFSIENTLLSVEVPPKDGLPHADIPFHPLVQCLDVDNLIRLFTAVLLERRILLRANKYSLLTLVSEAICHLIYPFKWQHNDIPLLFFSGVDYIDAPTPYMMGLPSGVDTSDLTMDGVVVVDLDYNRITTSEDIPSIPDPELGHLRTELMHLLYPNLMDLDHMQTTAGGLFGDFHRRNNKSWGEQHDLELRMIFLKFFASILSGYRNFVENTAARVFNTQAFLKKRSRTTNRPPESMVVQFLDSQGFFEFLERSHGSEESGHNLLDKLQDAIARGQNPYSVLPDTTSELEIITIADPSGGTAVSGAPYYYDRFPANARSQDQEDKRKAILAAASAALEHPNRHILSPRLDITGQNFARAGSLSPRERAAERERMVLDIKVKLQGLWMRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWHCQLTEEQFIAVKELLKTAISRAVARDDMVTVRDALETSAEIYKRDGNNVPDYVQRHLSTLHAWWELRFWEGYFESIMEKASDKLANYATLVTEQLVIIVSHLAGLGIPDEEAWFIVESIAQKNNLGYKQLIKLRGLLCYLQQVRQDYYGILQGRIQSLSSSVHNLPTQQPHDAADETQQPAEASGLGRSWVQSMFSRDPATRRPPAARVQRGASDSGVLVANENIQNAVPPRKVEIPPIGPKRGYSGVRILRGHKGSITALHAVTRREVYDLTSDQEDAGYFISGSADCTVKLWDPSHRGSELKATLIGHTRAIRAISSDKSRVVSGSDDQCVFVWDKQTSGVLEELKGHDAQVSCVKMLSGERVLTASHDGSVKMWDVRTDTCVATVGRASSAILCMEYDDNTGILAAGGRDAVGNIWDIRAGRQMQKLVGHTKWIRTLRMVGDTIITGSDDWTARVWSVSDGHCDAVLACHAGPITSVEYCASDNGIITGSEDGMVRLWNIGDGSLQCVKNVSIHSSAILSIKTADQWLAIGAADNSMSLFHRHEQRQGVLAGTGDRMAGWQLYRTPQRSAAVVRCVASDIDRGRICSGGRNGILRLWEPMVQT*

Protein Length: 1193

Fln nts: GAATTTTTGAGTATTTCGTTGTATGCGGGCTGGGCCCCGAGCTTCGATCTCTGGACGGCGCCAAGGGTTTCCAAGGGACACATGCC_-_ATGTACATGCCTTCTGTTTTGGACCAGTTCCCTTCTTCCAAGGACTCTGATTGTCCGCCTCCTCCTCCTCAGCTTTCAACTTGCGTGATGCCAGCAGGAGTGGCGTTCTATTCCTCAGGCTTCAGCGCCAGCGATAAATCCAGCCATCCCCACAGTTATCCGATAGTATTGACAGAGGGAGATGGAACTAAAATCTATGTCAGCTGTGTTGCTTTTCGGAATCCAGTCAGTGATGATATTGCTGAGGCCTATCGAATTCCTCCAAATTCTTTTGTGGACAAATGTATCTGCCTGGTTTCACATTCACCTAGTTTTCATGTCCTTCGAGAAGCTGCAGAGGAACTGTTCCGTTTATCTTTCTCACCTTCTGGTTGCAGCAAGCCAATATGGGAAATTGTGATGCATTTGGTTCTTAACGTTCCTCTACCAAGTCCAGGAAAGAACTGCATTTTATTTTCTATAGAGAATACTCTTCTCTCCGTGGAGGTACCGCCCAAGGATGGACTTCCTCATGCTGATATTCCTTTTCATCCACTGGTGCAGTGCTTGGATGTTGACAACCTAATTCGACTTTTTACTGCTGTTCTTCTTGAAAGGCGAATTCTACTTCGTGCAAACAAGTACTCATTACTAACTCTTGTATCAGAAGCTATTTGCCATTTAATCTATCCATTTAAGTGGCAGCATAATGACATTCCACTGCTGTTTTTTAGTGGAGTCGACTATATTGATGCTCCAACACCATATATGATGGGTCTTCCCTCAGGAGTTGACACATCTGATCTTACTATGGATGGTGTGGTTGTTGTGGACCTTGATTACAATCGTATAACAACATCAGAGGATATTCCCTCAATACCTGACCCAGAATTGGGTCATCTACGAACAGAATTAATGCACTTGCTGTACCCAAATCTTATGGATTTAGATCATATGCAAACGACTGCTGGAGGGCTTTTTGGAGATTTCCATAGACGCAATAATAAGTCTTGGGGGGAGCAACACGACTTGGAACTCAGAATGATATTCCTGAAGTTTTTCGCATCAATCCTTAGTGGTTATCGCAACTTTGTGGAGAATACAGCAGCACGGGTGTTCAATACACAGGCTTTCCTGAAAAAGCGATCTCGCACTACGAACCGCCCACCTGAGTCCATGGTAGTCCAGTTTTTAGATTCACAGGGTTTCTTTGAATTCCTGGAGAGAAGCCATGGATCAGAGGAGTCTGGGCATAATCTCCTAGACAAGCTACAAGATGCAATAGCTAGAGGCCAAAACCCTTATTCTGTGCTACCAGATACCACAAGCGAGCTAGAGATTATTACTATAGCAGACCCATCTGGTGGAACTGCAGTTTCAGGTGCTCCATACTATTATGATCGTTTCCCTGCCAATGCTAGGTCTCAAGATCAAGAAGATAAACGGAAAGCAATTCTGGCTGCTGCAAGTGCAGCGTTGGAACATCCCAACAGGCATATCCTAAGTCCAAGATTGGATATAACAGGACAGAATTTTGCCAGAGCAGGAAGTTTGAGCCCAAGGGAGAGAGCTGCAGAAAGAGAACGCATGGTTCTTGACATAAAGGTCAAGTTACAGGGACTTTGGATGCGCCTGCTTAAGCTGGGTGCAACTGACGATCCGCTTTCTTCATTCGAGTATGGGACAATTCTTGCTCTAATTGAGTCAGATGCAGAAGGTATTGGCGGAAGTGGATTTGTTGAATGCATCAGGGAGCATATTCACTCGGGATGGCATTGCCAATTGACAGAGGAGCAGTTCATTGCAGTGAAGGAGTTGCTTAAGACAGCAATAAGCCGTGCCGTTGCCAGAGACGACATGGTTACTGTCAGAGATGCCTTGGAAACTTCTGCTGAAATATATAAGAGAGATGGTAATAATGTACCAGATTACGTTCAACGCCATTTGAGTACTCTTCATGCCTGGTGGGAACTGCGATTTTGGGAAGGATATTTTGAGAGCATCATGGAGAAAGCCTCAGACAAGTTGGCCAACTATGCTACATTAGTCACTGAACAACTTGTTATAATTGTGTCTCATCTGGCTGGTTTAGGAATACCTGATGAAGAGGCCTGGTTCATAGTGGAATCAATTGCACAAAAGAACAATCTTGGATACAAGCAACTTATTAAGCTGAGGGGCTTATTGTGTTATTTGCAACAAGTGCGACAAGACTATTATGGTATCCTACAAGGACGGATACAATCATTGTCATCCTCTGTGCACAACCTACCCACTCAGCAACCACATGATGCCGCAGATGAAACTCAACAGCCAGCTGAAGCATCTGGTCTAGGACGGAGTTGGGTACAAAGCATGTTCAGTCGAGATCCAGCTACCCGTAGACCGCCTGCTGCTCGTGTGCAAAGAGGAGCATCTGACAGTGGTGTTCTAGTTGCCAATGAGAACATTCAGAATGCTGTACCACCACGGAAAGTAGAGATACCCCCCATTGGGCCAAAAAGGGGCTATTCAGGTGTGCGTATACTTAGGGGTCATAAGGGTTCTATTACTGCTCTCCATGCAGTGACAAGACGTGAAGTATATGATCTCACAAGTGATCAAGAGGATGCTGGATATTTCATTAGTGGGAGTGCTGATTGCACAGTCAAATTATGGGATCCAAGCCATCGTGGATCAGAACTTAAAGCAACCTTAATAGGGCATACCAGGGCAATTCGCGCCATTAGCTCTGACAAAAGTCGAGTTGTCTCTGGCTCTGATGATCAGTGTGTGTTTGTTTGGGATAAACAAACTTCTGGAGTTTTGGAAGAACTCAAGGGACATGACGCTCAGGTCAGCTGTGTAAAAATGCTTTCAGGAGAGCGTGTGCTTACTGCTTCTCATGATGGAAGTGTTAAGATGTGGGATGTTAGAACTGATACTTGTGTAGCAACAGTTGGCCGTGCTTCAAGTGCAATTCTATGTATGGAGTATGATGACAACACTGGAATTTTAGCTGCTGGTGGAAGGGATGCGGTTGGGAATATATGGGACATTCGAGCTGGAAGACAAATGCAGAAGCTTGTAGGGCACACAAAATGGATCCGAACCTTGAGAATGGTTGGAGACACGATTATCACTGGGAGCGATGATTGGACTGCTAGAGTATGGTCTGTATCTGATGGACATTGTGATGCTGTGCTTGCATGCCATGCTGGCCCAATAACTAGTGTTGAATACTGTGCATCTGACAATGGAATAATCACAGGTTCCGAAGATGGTATGGTGCGTTTATGGAACATTGGAGATGGATCATTGCAATGTGTGAAAAATGTCAGCATACATTCATCGGCTATACTGTCAATCAAGACTGCAGATCAGTGGTTAGCTATTGGTGCTGCAGATAATTCTATGTCTCTCTTCCATCGACATGAACAGAGACAAGGTGTTCTTGCTGGTACAGGTGATAGGATGGCTGGCTGGCAATTGTATCGAACTCCACAACGCAGTGCTGCTGTGGTCCGATGTGTAGCTTCTGATATTGACAGGGGCAGAATCTGCAGCGGTGGTCGCAATGGAATTCTTCGGCTTTGGGAACCAATGGTGCAAACATGACAGTTGTACCATAAACTCATTTGCAATATTAGTCTGCAAACAAGCAAGAAAACACCATTCTATTTCTTGTGAGGTATAAGGGACATATTTTGGCATGCATGAAGAGACCATCATGACATGTATGATTATTGTATTGTATGAAGTGAAAAGGCATAGCTTATTGAGTTTGCATTTGCAATTTTGAAATGTAGCTGTATAATATATAACCAAAATGATATGATTCTAAATTTTAGCATATTTTGGATGAACTTAAGCAGCTGCATGCTTATTTTTGTATGGAAGTTTGCTTCTTGTAGATTTATGTTCATTACACTTTCATAGCTAC

Fln Alignment:

Contig3735___NAVPPRKVEIPPIGPKRGYSGVRILRGHK--GSITALHAVTRREVYDLTSDQE---------------DAGYFISGSADCTVKLWDPSHRGSELKATLIGHTRAIRAISSD--KSRVVSGSDDQCVFVWDKQTSGVLEELKGHDAQVSCVKM-LSGERVLTASHDGSVKMWDVRTDTCVAT-VGRASSAILCMEYDDNTGILAAGGRDAVGNIWDIRAGRQMQKLVGHTKWIRTLRMV-----GDTIITGSDDWTARVWSVSDGHCDAVLACHAGPITSVEYCASDNGIITGS--EDGMVRLW
A9NPC1______________NSFKPYKLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDV-HTGDCIK-TLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 3)

Position	C %	G %	T %	Probability
3466	83	16		0.994512
3467		16	83	0.994512
3834		62	37	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
144	156	CCT CCT CCT CCT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain