SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3723

Length: 3267 nt

UniGene Fasta

>sp_v3.0_unigene3723
AGAGGATCTCCGGGACTTGAGCAAAGGGATTGGGAAAAGTCTGGTTGATTTCATTGCGCTACTGTATAGATTATGGACGACTACCGCGTCATTACTATAATAAACATAGCATTAGATCTCCAGGTCTTAAAATAGCAGTTTTTTCACCTAGGGCTGTTACAGGTTCTTCCTAACAGCCGGTCACAGGCACAGGGGCGTTTCTTAAACTTTTAGCCAGCAGGGGGATTGAATGTGCAGGTGGGTCAGCTGGGGGATTGAATTTGCATGTGTGCCTTCGTCCTTTTTTATTTCCGAGGATGGGTTCATGATGGTAATTACAGATCGAATCAGCCCATTTATGTATAAATAGTGGCACAGATGATATGATCGCCGCTGATTAGCCAAGGTTGTAATATATGATATGATCACCGCTGATTAGCCAAGGTTGTAATAGAGAAGAACAATTGCAGAGAGGTGCAATGGACGGTGAAGAAGAGGGGTTTAGAGATATTGAGAGCGATGATTACGGTCGTGTGGGAAGTGATCTGCATCGGCCTCTTCTTAAGAAGAAGAAGAGTCGTTTCAGCGGGTCCATGGTCAACAATGGCACATCGCAGCTAGCAATCGTGGGTGCCAATGTTTGTCCTGTTGAGAGTTTAGATTATGAGATTAGTGAGAATACTCTCTTTAAGCAAGATTGGAGAGGCAGGACACGGATGCAAATCTTCCAGTACATTGTTCTCAAGTGGACTTTTGCTTTTCTGATTGGCCTCACAACTGGGCTGGTTGGGTTCTTCAACAATTTAGCTGTAGAAAACATTGCTGGGTACAAGCTGGTCGTCACCTCCAACTATATGTTGCAGCAGAGGTATGGACTAGCCTTTACTGTATTTGCCTGCTCCAATTTCGTTTTGTCTCTACTGTCAGCTTTGCTCTGTGCTTACATTGCGCCAGCTGCTGCTGGGTCTGGTATACCTGAAGTTAAGGCTTACCTCAATGGAGTTGATGCCCCTGTTATTCTGTCGCCTAGCACATTGTTTGTGAAGATATTTGGTAGCATTTTTGCAGTGGCTGGTGGTTTGGATGTAGGTAAGGAGGGGCCAATGGTACACACTGGGGCATGTGTAGCGTCATTACTAGGCCAAGGTGGTTCAAAGCGTTATCATTTAACATGGAGATGGTTAAGGTACTTCAAAAATGACAGAGATAGACGTGATTTGATTACATGTGGTGCTGCTGCTGGAGTTGCTGCTGCATTTCGTGCTCCAGTTGGAGGAGTCCTTTTTGCACTCGAAGAAGCAGCATCATGGTGGCGGAGTGCACTTCTTTGGAGAACCTTTTTCACAACAGCGGTTGTTGCTGTGGTGCTAAGGGCGTTTATAAACTATTGTAACGTTGGAAAATGTGGGCTCTTTGGGAAGGGAGGCTTAATAATGTTTGACGTCAGTGCCGTGTCAATAACGTATCACATTAGTGATCTGCTTCCAGTGATTATTCTTGGAGTGATTGGAGGAGTGTTTGGAGGTCTTTATAACTACCTTCTAGATAAGGTTCTGAGGGTTTATAATCTCATTAATGAGAGGGGTCCTATGTTCAAATTGCTTCTTGCTTCTACCGTGTCTATTTTTACATCTTGTTGCTACTTTGGACTACCATGGATTGCAAAATGTATCCCTTGTCCTGAAGGATTGGATGAAACATGTCCTACAATTGGCCGTTCAGGGAATTTCAAAAAGTTCCAGTGTCCACCTGGTCATTACAATGATCTGGCGAGTTTGTTTTTCAATACGAGTGATGATGCAATTCGAAATCTCTTCAGTTCTGGCACAAAGTCTGAGTTTCATGTGTCATCAATACTTCTGTTCTTTTGTGCAGTATATGTTCTTGCAATCTTTTCATATGGGATTGCAGTACCATCAGGTCTATTCATACCTGTTATTTTAACTGGTGCCTCTTATGGTCGATTTGTTGGCATCTTGCTTGGATCATTTACAGACCTGGATCAAGGACTTTTTGCTGTTCTTGGAGCAGCTTCTTTCCTTGGGGGTTCAATGAGGATGACAGTTTCACTATGTGTAATTCTTTTGGAATTGACAAATAATTTGTTGATGCTTCCTCTTGTTATGCTGGTATTGTTAATATCGAAGACTGTGGCCGATGCATTTAACAGTGGTGTTTATGACCAAATTGTTCGCCTCAAGGGCTTGCCATTCCTTGAACCACATGCGGAACCTTATATGCGGAATTTGAGTGCAGTTGATGTTGTTAGAGGCCCATTGGTGACCTTTTCTGGAATAGAAAAGGTTGATAACATTGTGCAGGTCTTGAAGAGCTGTAAACACAATGGTTTTCCTGTGATAGATGAACCTCCTTTCTCAGAGGCACCTATTTTATATGGTCTTGTGTTGCGTTCGCATTTACTTGTTTTGCTGAAGAAGAAACTATTTCTACCCTCGAGGGATTTGGCTAGTGAAGATTTTGTTAAGCAGTTCTCTTCGGTAGACTTTGCAAAGCCTGGATCAGGTAAAGGCCTCAACATTGAAGCGATAGAGATAAGTGCGGATGAAGCAGAAATGTTTATCGATTTACATCCATTTGCAAATACCTCTCCTTATACTGTTGTGGAGACAATGTCATTGGCAAAGGCACAGATTCTTTTTCGACAAGTTGGATTGCGCCACCTTTGTGTGGTCCCTAAGTCTTCTGGGAGACCTCCTATAGTTGGCATATTGACCCGGCATGACTTTATGCCTGAGTACATTTTGGAAATGTATCCTGACTTGAAACAAAATCGATGGAAGAGGTTACGCATTCGATTATCAGCTTTCACTAGCATTATGAAAACACTTCCAATAGTAAAAAGATGTTTCTAAAGTCTGTTTGAGATCTTTTCTTCATAGGCTTTAGACTAACTAGTGGATTAAAGATCGTTTGTAGGAAGAAATTGGTTTTTTTGGAGGGTTTGTTTTGGATCAGATGTCAACTGGTAATATAATATTCTTATTATTCTTTCGCTGTCCAATCGATTGTTTTGGACATGTCTAAATGCTTATTACTTTTCTGATGTCAAGGCCCTGAGAATTGGTTTATTTGTAGTTATGGAGCCTTGCCACCACTTATTCTGGTTTGCAATGTTAGCATTAACATTTTGACAGCAATCCAGTGAAGTTCTATCCTCACTTTTTGTCCAATGGATCACGAAATTTTCAACAAAGATTATTGGGAACCAAGACCTTTCGAAATGAGAATCATTCATGGAGGGACGTGAATTCCTGGTAAGCATTATAT

Ace file of the UniGene sp_v3.0_unigene3723

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cl-channel clc-7 n=2 Tax=Populus trichocarpa RepID=B9N0H5_POPTR	-	-	0.0	59%
FL-Next	sp=Putative chloride channel-like protein CLC-g; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Cl-channel clc-7	-	-	7.488e-20	-

Source	Gene names
Sma3	At3g27170; At5g26240; At5g33280; At5g40890; At5g49890; C1C-Nt1; CHLREDRAFT_38456; CLC-A; CLC-B; CLC-C; CLC-D; F19N02.1; F9D12.10; GSVIVT00003626001; GSVIVT00006420001; GSVIVT00019950001; GSVIVT00035336001; GSVIVT00037838001; GSVIVT00038745001; H0413E07.11

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	voltage-gated chloride channel activity	GO:0005247	Molecular Function	-
Sma3	chloride ion binding	GO:0031404	Molecular Function	-
Sma3	chloride transport	GO:0006821	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel ClC-plant	IPR002251	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Coatomer, epsilon subunit	IPR006822	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G33280.1	Voltage-gated chloride channel family protein chr5:12549280-12552305 FORWARD LENGTH=765	67%
RefSeq	Arabidopsis thaliana	NP_198313.2	putative chloride channel-like protein CLC-g [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002331119.1	Cl-channel clc-7 [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P60300

Fln msg: your sequence is longer than subject: 798 - 765

Fln protein: MDGEEEGFRDIESDDYGRVGSDLHRPLLKKKKSRFSGSMVNNGTSQLAIVGANVCPVESLDYEISENTLFKQDWRGRTRMQIFQYIVLKWTFAFLIGLTTGLVGFFNNLAVENIAGYKLVVTSNYMLQQRYGLAFTVFACSNFVLSLLSALLCAYIAPAAAGSGIPEVKAYLNGVDAPVILSPSTLFVKIFGSIFAVAGGLDVGKEGPMVHTGACVASLLGQGGSKRYHLTWRWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRAFINYCNVGKCGLFGKGGLIMFDVSAVSITYHISDLLPVIILGVIGGVFGGLYNYLLDKVLRVYNLINERGPMFKLLLASTVSIFTSCCYFGLPWIAKCIPCPEGLDETCPTIGRSGNFKKFQCPPGHYNDLASLFFNTSDDAIRNLFSSGTKSEFHVSSILLFFCAVYVLAIFSYGIAVPSGLFIPVILTGASYGRFVGILLGSFTDLDQGLFAVLGAASFLGGSMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADAFNSGVYDQIVRLKGLPFLEPHAEPYMRNLSAVDVVRGPLVTFSGIEKVDNIVQVLKSCKHNGFPVIDEPPFSEAPILYGLVLRSHLLVLLKKKLFLPSRDLASEDFVKQFSSVDFAKPGSGKGLNIEAIEISADEAEMFIDLHPFANTSPYTVVETMSLAKAQILFRQVGLRHLCVVPKSSGRPPIVGILTRHDFMPEYILEMYPDLKQNRWKRLRIRLSAFTSIMKTLPIVKRCF*

Protein Length: 799

Fln nts: AGAGGATCTCCGGGACTTGAGCAAAGGGATTGGGAAAAGTCTGGTTGATTTCATTGCGCTACTGTATAGATTATGGACGACTACCGCGTCATTACTATAATAAACATAGCATTAGATCTCCAGGTCTTAAAATAGCAGTTTTTTCACCTAGGGCTGTTACAGGTTCTTCCTAACAGCCGGTCACAGGCACAGGGGCGTTTCTTAAACTTTTAGCCAGCAGGGGGATTGAATGTGCAGGTGGGTCAGCTGGGGGATTGAATTTGCATGTGTGCCTTCGTCCTTTTTTATTTCCGAGGATGGGTTCATGATGGTAATTACAGATCGAATCAGCCCATTTATGTATAAATAGTGGCACAGATGATATGATCGCCGCTGATTAGCCAAGGTTGTAATATATGATATGATCACCGCTGATTAGCCAAGGTTGTAATAGAGAAGAACAATTGCAGAGAGGTGCA_-_ATGGACGGTGAAGAAGAGGGGTTTAGAGATATTGAGAGCGATGATTACGGTCGTGTGGGAAGTGATCTGCATCGGCCTCTTCTTAAGAAGAAGAAGAGTCGTTTCAGCGGGTCCATGGTCAACAATGGCACATCGCAGCTAGCAATCGTGGGTGCCAATGTTTGTCCTGTTGAGAGTTTAGATTATGAGATTAGTGAGAATACTCTCTTTAAGCAAGATTGGAGAGGCAGGACACGGATGCAAATCTTCCAGTACATTGTTCTCAAGTGGACTTTTGCTTTTCTGATTGGCCTCACAACTGGGCTGGTTGGGTTCTTCAACAATTTAGCTGTAGAAAACATTGCTGGGTACAAGCTGGTCGTCACCTCCAACTATATGTTGCAGCAGAGGTATGGACTAGCCTTTACTGTATTTGCCTGCTCCAATTTCGTTTTGTCTCTACTGTCAGCTTTGCTCTGTGCTTACATTGCGCCAGCTGCTGCTGGGTCTGGTATACCTGAAGTTAAGGCTTACCTCAATGGAGTTGATGCCCCTGTTATTCTGTCGCCTAGCACATTGTTTGTGAAGATATTTGGTAGCATTTTTGCAGTGGCTGGTGGTTTGGATGTAGGTAAGGAGGGGCCAATGGTACACACTGGGGCATGTGTAGCGTCATTACTAGGCCAAGGTGGTTCAAAGCGTTATCATTTAACATGGAGATGGTTAAGGTACTTCAAAAATGACAGAGATAGACGTGATTTGATTACATGTGGTGCTGCTGCTGGAGTTGCTGCTGCATTTCGTGCTCCAGTTGGAGGAGTCCTTTTTGCACTCGAAGAAGCAGCATCATGGTGGCGGAGTGCACTTCTTTGGAGAACCTTTTTCACAACAGCGGTTGTTGCTGTGGTGCTAAGGGCGTTTATAAACTATTGTAACGTTGGAAAATGTGGGCTCTTTGGGAAGGGAGGCTTAATAATGTTTGACGTCAGTGCCGTGTCAATAACGTATCACATTAGTGATCTGCTTCCAGTGATTATTCTTGGAGTGATTGGAGGAGTGTTTGGAGGTCTTTATAACTACCTTCTAGATAAGGTTCTGAGGGTTTATAATCTCATTAATGAGAGGGGTCCTATGTTCAAATTGCTTCTTGCTTCTACCGTGTCTATTTTTACATCTTGTTGCTACTTTGGACTACCATGGATTGCAAAATGTATCCCTTGTCCTGAAGGATTGGATGAAACATGTCCTACAATTGGCCGTTCAGGGAATTTCAAAAAGTTCCAGTGTCCACCTGGTCATTACAATGATCTGGCGAGTTTGTTTTTCAATACGAGTGATGATGCAATTCGAAATCTCTTCAGTTCTGGCACAAAGTCTGAGTTTCATGTGTCATCAATACTTCTGTTCTTTTGTGCAGTATATGTTCTTGCAATCTTTTCATATGGGATTGCAGTACCATCAGGTCTATTCATACCTGTTATTTTAACTGGTGCCTCTTATGGTCGATTTGTTGGCATCTTGCTTGGATCATTTACAGACCTGGATCAAGGACTTTTTGCTGTTCTTGGAGCAGCTTCTTTCCTTGGGGGTTCAATGAGGATGACAGTTTCACTATGTGTAATTCTTTTGGAATTGACAAATAATTTGTTGATGCTTCCTCTTGTTATGCTGGTATTGTTAATATCGAAGACTGTGGCCGATGCATTTAACAGTGGTGTTTATGACCAAATTGTTCGCCTCAAGGGCTTGCCATTCCTTGAACCACATGCGGAACCTTATATGCGGAATTTGAGTGCAGTTGATGTTGTTAGAGGCCCATTGGTGACCTTTTCTGGAATAGAAAAGGTTGATAACATTGTGCAGGTCTTGAAGAGCTGTAAACACAATGGTTTTCCTGTGATAGATGAACCTCCTTTCTCAGAGGCACCTATTTTATATGGTCTTGTGTTGCGTTCGCATTTACTTGTTTTGCTGAAGAAGAAACTATTTCTACCCTCGAGGGATTTGGCTAGTGAAGATTTTGTTAAGCAGTTCTCTTCGGTAGACTTTGCAAAGCCTGGATCAGGTAAAGGCCTCAACATTGAAGCGATAGAGATAAGTGCGGATGAAGCAGAAATGTTTATCGATTTACATCCATTTGCAAATACCTCTCCTTATACTGTTGTGGAGACAATGTCATTGGCAAAGGCACAGATTCTTTTTCGACAAGTTGGATTGCGCCACCTTTGTGTGGTCCCTAAGTCTTCTGGGAGACCTCCTATAGTTGGCATATTGACCCGGCATGACTTTATGCCTGAGTACATTTTGGAAATGTATCCTGACTTGAAACAAAATCGATGGAAGAGGTTACGCATTCGATTATCAGCTTTCACTAGCATTATGAAAACACTTCCAATAGTAAAAAGATGTTTCTAA___AGTCTGTTTGAGATCTTTTCTTCATAGGCTTTAGACTAACTAGTGGATTAAAGATCGTTTGTAGGAAGAAATTGGTTTTTTTGGAGGGTTTGTTTTGGATCAGATGTCAACTGGTAATATAATATTCTTATTATTCTTTCGCTGTCCAATCGATTGTTTTGGACATGTCTAAATGCTTATTACTTTTCTGATGTCAAGGCCCTGAGAATTGGTTTATTTGTAGTTATGGAGCCTTGCCACCACTTATTCTGGTTTGCAATGTTAGCATTAACATTTTGACAGCAATCCAGTGAAGTTCTATCCTCACTTTTTGTCCAATGGATCACGAAATTTTCAACAAAGATTATTGGGAACCAAGACCTTTCGAAATGAGAATCATTCATGGAGGGACGTGAATTCCTGGTAAGCATTATAT

Fln Alignment:

Contig3723___NGTSQLAIVGANVCPVESLDYEISENTLFKQDWRGRTRMQIFQYIVLKWTFAFLIGLTTGLVGFFNNLAVENIAGYKLVVTSNYMLQQRYGLAFTVFACSNFVLSLLSXXXXXXXXXXXXGSGIPEVKAYLNGVDAPVILSPSTLFVKIFGSIFAVAGGLDVGKEGPMVHTGACVASLLGQGGSKRYHLTWRWLRYFKNDRDRRDLITCXXXXXXXXXXXXXXXXXLFALEEAASWWRSALLWXXXXXXXXXXXXXXXXINYCNVGKCGLFGKGGLIMFDVSAVSITYHISDXXXXXXXXXXXXXXXXXYNYLLDKVLRVYNLINERGPMFKLLLASTVSIFTSCCYFGLPWIAKCIPCPEGLDETCPTIGRSGNFKKFQCPPGHYNDLASLFFNTSDDAIRNLFSSGTKSEFHVSSILLFFCAVYVLAIFSYGIAVPSGLFIPVILTGASYGRFVGILLGSFTDLDQGLFAVLGAASFLGGSMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKTVADAFNSGVYDQIVRLKGLPFLEPHAEPYMRNLSAVDVVRGPLVTFSGIEKVDNIVQVLKSCKHNGFPVIDEPPFSEAPIXXXXXXXXXXXXXXXXXXXXPSRDLASEDFVKQFSSVDFAKPGSGKGLNXXXXXXXXXXXXMFIDLHPFANTSPYTVVETMSLAKAQILFRQVGLRHLCVVPKSSGRPPIVGILTRHDFMPEYILEMYPDLKQNRWKRLRIRLSAFT
P60300______________NSTSQVAIVGANVCPIESLDYEIAENDFFKQDWRGRSKVEIFQYVFMKWLLCFCIGIIVSLIGFANNLAVENLAGVKFVVTSNMMIAGRFAMGFVVFSVTNLILTLFASVITAFVAPAAAGSGIPEVKAYLNGVDAPEIFSLRTLIIKIIGNISAVSASLLIGKAGPMVHTGACVASILGQGGSKRYRLTWRWLRFFKNDRDRRDLVTCGAAAGIAASFRAPVGGVLFALEEMSSWWRSALLWRIFFSTAVVAIVLRALIDVCLSGKCGLFGKGGLIMFDVYSENASYHLGDVLPVLLLGVVGGILGSLYNFLLDKVLRAYNYIYEKGVTWKILLACAISIFTSCLLFGLPFLASCQPCPVDALEECPTIGRSGNFKKYQCPPGHYNDLASLIFNTNDDAIKNLFSKNTDFEFHYFSVLVFFVTCFFLSIFSYGIVAPAGLFVPVIVTGASYGRFVGMLLGSNSNLNHGLFAVLGAASFLGGTMRMTVSTCVILLELTNNLLLLPMMMVVLLISKTVADGFNANIYNLIMKLKGFPYLYSHAEPYMRQLLVGDVVTGPLQVFNGIEKVETIVHVLKTTNHNGFPVVDGPPLAAAPVLHGLILRAHILTLLKKRVFMPSPVACDSNTLSQFKAEEFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRHLLVIPKTSNRPPVVGILTRHDFMPEHILGLHPSVSRSKWKRLRIRLPFFS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1580	33		66		0.997452
2252		66		33	0.997452
3074	90			10	0.90298
3157		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
543	555	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain