SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3708

Length: 1801 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3708 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9SY40_RICCO	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	White-brown-complex ABC transporter family	-	-	8.282e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	4.304e-07	-

Source	Gene names
Sma3	At1g53270; At2g13610; At4g25750; At5g19410; At5g52860; F12M16.17; F14M19.30; F7K24.160; GSVIVT00004139001; GSVIVT00017859001; GSVIVT00018716001; GSVIVT00019293001; GSVIVT00022267001; GSVIVT00027796001; GSVIVT00033423001; GSVIVT00037777001; MXC20.8; NtWBC1

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19410.1	ABC-2 type transporter family protein chr5:6545237-6547111 REVERSE LENGTH=624	53%
RefSeq	Arabidopsis thaliana	NP_197442.1	ABC transporter G family member 23 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002313260.1	white-brown-complex ABC transporter family, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: your sequence is shorter than subject: 565 - 819

Fln protein: EILAIVGPSGAGKSTLLEILAGRIRPERAKNSILVNERPVNPSQFRRISGYVTQEDALLPFLTVKETLMYSARFRLPASVSRLEKEAKVEALISELGLAHVSSTRIGDESIRGVSGGERRRVSIGVDVIHDPAVLFLDEPTSGLDSAAALHVVEMLHAMAKKPQSRTVILTIHQPSYRILNLISSLLILTKGSVAYHGSLKSLHESLESAGRKIPPQLNALEYAMEIISETAGNFDHDSSGNVFTEQGLPQRNLQGPFAGLASVVNPEPIGLDDDGDDRVEYANSRCCEIYTLSCRFCKIIYRTQQLFVARTMQAIVAGVGLGTVYLKVGYNQRGLDERLGFFAFTLTFLLSSTTEALPIFLQERQILMRETSRGAYRVSSYVISNTLVFLPFLMIIAILFAVPVYWLVGLSSTSDAFLFFLLIVWLIVVMANSLVVFLSALAPDFITGNSLIFTILGAFFLFSGYFISKDNIPKYWLFMHYISLYKYPLDSLLINEYSSLATKCFSWYPELNVCAATGEDILQQRGLQKGRLWMNVEIMVAFAIFYRILCYVILKRRACRAKR*

Protein Length: 566

Fln nts: GCGAAATTTTAGCCATAGTAGGGCCTAGCGGTGCTGGTAAATCTACTTTGCTCGAGATTCTTGCCGGTAGGATAAGGCCTGAGCGGGCTAAAAACAGCATTTTGGTTAATGAAAGACCAGTGAATCCTTCACAGTTCAGAAGGATTTCTGGCTATGTCACACAGGAAGATGCCCTGCTCCCGTTCCTTACTGTGAAGGAAACGCTCATGTACAGTGCCCGGTTTAGGCTCCCGGCTTCGGTATCCAGGCTAGAAAAGGAAGCCAAGGTTGAAGCTCTTATATCTGAGCTGGGTCTTGCGCATGTTTCAAGCACTCGTATTGGGGATGAAAGCATCAGAGGAGTCTCAGGGGGTGAAAGAAGAAGGGTTTCAATCGGGGTAGACGTCATACATGACCCGGCTGTGTTGTTTCTAGATGAACCCACTTCTGGTCTGGACAGTGCAGCAGCTCTGCATGTAGTAGAGATGCTACATGCAATGGCCAAAAAACCCCAGAGCCGAACGGTTATCTTAACAATTCATCAACCCAGCTACAGGATTCTGAATCTGATAAGCTCTTTATTGATCCTTACGAAGGGCTCAGTAGCATACCATGGGTCTTTGAAGTCACTGCATGAGTCACTTGAATCTGCAGGCAGAAAAATCCCCCCACAGCTTAATGCATTGGAGTATGCAATGGAAATCATCAGTGAAACCGCCGGAAATTTTGATCATGATTCTTCTGGGAATGTTTTCACAGAGCAGGGGTTGCCACAGAGAAACTTGCAAGGCCCATTTGCAGGTCTGGCTAGTGTTGTTAATCCTGAGCCAATTGGTCTTGATGATGATGGAGATGACAGAGTTGAATATGCCAATTCCAGATGCTGTGAAATCTATACTCTGTCATGCAGGTTTTGCAAGATAATCTACAGAACACAGCAGTTATTCGTTGCAAGAACTATGCAGGCAATAGTTGCAGGGGTAGGCCTTGGAACTGTGTACTTGAAGGTTGGTTATAACCAACGTGGTCTGGATGAACGCTTGGGGTTTTTCGCATTTACCTTAACATTTCTGCTATCATCTACTACCGAAGCTCTTCCCATTTTCCTTCAGGAGCGCCAGATTCTGATGCGAGAGACATCCAGAGGTGCTTATAGAGTTTCATCATATGTCATCTCTAATACCCTTGTCTTCCTTCCTTTCTTGATGATAATTGCAATTCTGTTTGCGGTTCCTGTTTATTGGCTTGTTGGTCTCAGCAGCACATCGGATGCGTTTCTCTTCTTTTTGCTCATAGTTTGGCTTATTGTTGTCATGGCAAACTCATTAGTAGTATTTCTCAGTGCTCTGGCACCTGATTTTATCACAGGAAACTCTCTCATATTCACCATACTGGGAGCCTTTTTTCTCTTCTCTGGGTATTTTATATCCAAGGATAACATCCCCAAGTATTGGCTGTTTATGCACTATATATCTCTTTACAAGTATCCTCTGGATTCTCTTCTGATAAACGAGTACTCAAGCCTGGCAACCAAATGCTTCTCATGGTATCCTGAGCTCAATGTATGTGCAGCTACTGGTGAAGATATATTGCAACAGCGAGGATTGCAGAAAGGTAGACTGTGGATGAATGTGGAGATCATGGTGGCCTTTGCCATTTTCTACCGAATCCTTTGTTATGTTATCCTCAAGAGAAGAGCTTGCAGAGCAAAACGTTAA___ATCAATATGATCCGGAAACGAAGTGAAATAAGCTTGAGGATTATCACGTGAAGCAATGAGCAGGTTTTGATGACATTTTTCTTTCTTTCTGTATGTTCATTTCT

Fln Alignment:

Contig3708___EILAIVGPSGAGKSTLLEILAGRIRPERAKNSILVNERPVNPSQFRRISGYVTQEDALLPFLTVKETLMYSARFRLPASVSRLEKEAKVEALISELGLAHVSSTRIGDXXXXXXXXXXXXXXXXXVDVIHDPAVLFLDEPTSGLDSAAALHVVEMLHAMAKKPQSRTVILTIHQPSYRXXXXXXXXXXLTKGSVAYHGSLKSLHESLESAGRKIPPQLNALEYAMEI-------------ISETAGNFDHDSSGNVF----TEQGLPQRNLQGPFAGLASVVNPEPIGLDDDGDD-------RVEYANSRCCEIYTLSCRFCKIIYRTQQLFVARTMQAIVAGVGLGTVYLKVGYN-QRGLDERLGXXXXXXXXXXXXXXXXLPI-FLQERQILMRETSRGAYRVSSYVISNTLVFLPFLMIIAILFAVPVYWLVGLSSTSDAXXXXXXXXXXXXVMANSLVVFLSALAPDFITGNSLIFTILGAFFLFSGYFISKDNIPKYWLFMHYISLYKYPLDSLLINEY-SSLATKCFSWYPELNVCAATGEDILQQRGLQKGRLWMNVEIMVAFAIFYRILCYVILKRRACR
B8LNF9______________EMLAMMGPSGSGKTTLINLLGGRIQ-QNVSGSITYNDQPYSKALKRRI-GFVTQDDVLFPHLTVRETLTYTALLRLPRTLTKHQREQRAQEVVRELGLERCQDTIIGGNFVRGISGGERKRVCIGCEILIDPSLLFLDEPTSGLDSTTALRIVQMLHDIAR--AGRTVVSTIHQPSSRLFHKFDKLILLGEGHSIYFGKASDAMEYFSSVGFSPFLAMNPADFLLDLANGNIHDISVPAELENTSHAEAEDNHGDKFPRSLSSHDVLEYLIEAYETNVAPMEKAKLITLNEVTDDLKSSVSAKREWGATWWDQFSILFVRGLK-ERRHEYLSFLRIAQVFLTALILGLLWWQSNIDTPKGLQDQIGLIFFIAVFWGFFPVFTAIFTFPQERAMLSKERAVDMYRLSAYFMARILSDLPLDLFLPIGFLLIVYFMAHLRMTVTAFLLTMLTTFLSIVASQGLGLAIGAAFMDLKKATTLASVTMMAFMLAGGFFVQR--VHPFIKWIRYLSFNYYTYKILLKIQYDADQLYDCSS--PSGCKSIATSSSL---RGIPLDGGIKEATVMLIMVFGYRLLAYFSLLRMKLR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
532	33			66	1.0
537			66	33	1.0
593			88	11	0.923564
596	88		11		0.923564
597		88		11	0.923564
598		88	11		0.923564
599	11		88		0.923564
602	88		11		0.923564
603	88	11			0.923564
606	11		88		0.923564
607	88		11		0.923564
608	88		11		0.923564
610		11		88	0.923564
611	11		88		0.923564
613	88		11		0.923564
615		11		88	0.923564
616			11	88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
15	27	AGAA AGAA AGAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain