SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3704

Length: 2303 nt

UniGene Fasta

>sp_v3.0_unigene3704
TCGAAACATGGTGAATGTGGTATTAAATTTCTACCGACTCGGAGGTGAAAAATGAAAAATGCATGATCTGTGATATGATATTGTATTTGACAGTGGTGGGCAATTGCAGGTCCGTGGCCATGGGACCATTTGTTGAGTTGTAGTGTGCTGTTCCTGCGCACTGTGAGTGTTTTGCAATGCGTGATATGTGTGGGCTCACGGATAAGCGCTGAAGGACCAGTTTGCATCGCACACTCATTTGGAGGCCTGAACTTCACTTGTGGAGGACTGCCAGGCATTTGGTGCTGCAAACCTTGTTGTGATCAGTGAAGATCAACTCTCTGTTCAGATCTGTTTACATTCTTGCTTGAAGTGTTCAAAGAAATCCAATGTAAATGGGATTTGATCTACCTCCGTGTATTCTTGTTACCAATTTTACAAATTTGAGAGCAGTGCTATGCATTTTTGGGTCTGAACCTTCCTTGAGAAAATGCAGATATCTACCTCTTTGAATATCTCCTGAGCTTTCTGCCACAGCCTGACTGACTTTCAAGTAGAACTCATTTTCAAGATGGGGCATTCAGTTTTACTGCATATTTTGATTCTGAGTCTCTCTCTTTTTAACAAACTTGAGACTGCAAAGGGACGTTCTTTACTCGGGCCTACCTCTGCGCCAGTTTCTTTGCATTTCGCACTGTCATCGGCTTCCCTACTTGATGATCCCCTGGCAAAAAGAAATGCATCAACTAAACCAGAAAATTCAACCGGTTCTCCAATGCAGATAGACAAAGAATCTCATCACATCAACAAAGGACTGCTATTGGCAATTATCATACTGCCAATATTTGTTGGATGTATCATGATTTCTTCAGTTTGTACTTGGTTGTATAGAAAGACTTACAACTCTGATCCTTCTTCACCTCAACCTCATGCATTCAAGCGAAATTTAGATCCAGACGCCTCAGATGCCTATAGGGGTATTCCACTCATGCCTCTCCTGAGTCGTTTGAACTCCCGTGTTTCTAAGAAGAAGGGATGTGCAACCGCAATTGAATATTCTAAGCTGCTAACAGCTACAAATAACTTCAACAACAATAACATACGTGGAGAGGGTGGATTTGGGTGTGTATACAAGGCAATGTTTGATGATGATTCCTTTGCTGCTGTGAAGAAGCTAGATGAGGGTAGTAGACAGGCTGAGCATGAATTTCAGAATGAAGTGGAGCTAATGAGCAAAATCCGACATCCAAACCTTGTTTCTTTGCTTGGGTTCTGCACTCATGAAAATACACGGTTTTTAGTATACGATCTGATGCAGAATGGCTCTTTGGAAGACCAATTACATGGACCATCTCACGGATCTGCACTTACATGGTTTTTGCGGATGAAAATAGCCCTTGATTCAGCAAGGGGTCTAGAACACTTGCACGAGCACTGCAACCCTGCAGTGATTCACCGAGATTTCAAATCATCAAATATTCTTCTTGATGCAAGCTTCAACGCCAAGCTTTCAGATTTTGGTCTTGCAGTAAAAAGTGCAGGATGTGCTGGTAACACAAATATTGATCTAGTAGGGACATTGGGATATGTAGCTCCAGAATACATGCTTGATGGTAAATTGACAGAGAAAAGTGATGTCTATGCATATGGAGTTGTTTTGTTAGAGCTACTTTTTGGAAGAAAGCCAATTGATAAATCTCTACCAAGTGAATGCCAATCTCTCATTTCTTGGGCAATGCCACAGCTAACAGATAGAGAAAAGCTCCCGACTATAATAGATCCCATGATCAAAGGCGCAATGAACTTGAAACACCTATATCAAGTGGCAGCTGTTGCAGTGCTATGTGTGCAGCCAGAACCCAGTTACAGGCCATTAATAGCTGACGTTGTGCACTCTCTCATTCCTCTCGTACCAGTAGAACTTGGGGGAACATTAAAGTCATCACCCACTGAGATGAAGTCATTTGCTTCTTCCCAATGCAGTGCCAACGTTGCTTCCAACTCAAAATTGTGATTTGTAAATAATTAATTTCCCATCTCTGGATGGGGTTTGTCATATGCTTAAGAACACGTCATGTGACAATTATATTTTAAAATTTGTGGGCATATAGATTTATGTCCTTCTGTACACAGGGCGGCGGCTTAGGGTGACAACGTGGGCTGTAATTTATAGGTTGAATTTCACATCTGAGATAAAAGGAACATATTGGTCTCATTTCAAGGTCAGAGCTCTGATTGACCTAAGCTTTTTCAGTCAGGCGACATTTAAATGATTCATCTTGTTTAATGTTAATGGTGGTGGATTGGCTGTTTGAAGTTCCCCA

Ace file of the UniGene sp_v3.0_unigene3704

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase 2 [Oryza sativa Japonica Group]	-	-	0.0	56%
FL-Next	sp=Probable receptor-like protein kinase At1g80640; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	Receptor serine-threonine protein kinase, putative	-	-	1.097e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.106e-15	-
Sma3		EC:2.7.11.3-	-	2.825e-07	-

Source	Gene names
Sma3	673I14.2; AT4g02010; At1g07870; At1g20650; At1g26150; At1g68690; At1g76370; At1g80640; At2g20300; At2g25220; At2g28590; At3g20530; At3g58690/T20N10_40; At4g02010; At4g13190; At5g02800; B1130E07.8; B1331F11.28; F14C21.40; F15M4.13; F24B9.4; F24J5.8; F28B23

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25220.2	Protein kinase superfamily protein chr2:10742918-10745540 REVERSE LENGTH=437	55%
RefSeq	Arabidopsis thaliana	NP_180094.5	protein kinase domain-containing protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002299270.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q0V7T5

Fln msg: your sequence is longer than subject: 481 - 427

Fln protein: MGHSVLLHILILSLSLFNKLETAKGRSLLGPTSAPVSLHFALSSASLLDDPLAKRNASTKPENSTGSPMQIDKESHHINKGLLLAIIILPIFVGCIMISSVCTWLYRKTYNSDPSSPQPHAFKRNLDPDASDAYRGIPLMPLLSRLNSRVSKKKGCATAIEYSKLLTATNNFNNNNIRGEGGFGCVYKAMFDDDSFAAVKKLDEGSRQAEHEFQNEVELMSKIRHPNLVSLLGFCTHENTRFLVYDLMQNGSLEDQLHGPSHGSALTWFLRMKIALDSARGLEHLHEHCNPAVIHRDFKSSNILLDASFNAKLSDFGLAVKSAGCAGNTNIDLVGTLGYVAPEYMLDGKLTEKSDVYAYGVVLLELLFGRKPIDKSLPSECQSLISWAMPQLTDREKLPTIIDPMIKGAMNLKHLYQVAAVAVLCVQPEPSYRPLIADVVHSLIPLVPVELGGTLKSSPTEMKSFASSQCSANVASNSKL*

Protein Length: 482

Fln nts: TCGAAACATGGTGAATGTGGTATTAAATTTCTACCGACTCGGAGGTGAAAAATGAAAAATGCATGATCTGTGATATGATATTGTATTTGACAGTGGTGGGCAATTGCAGGTCCGTGGCCATGGGACCATTTGTTGAGTTGTAGTGTGCTGTTCCTGCGCACTGTGAGTGTTTTGCAATGCGTGATATGTGTGGGCTCACGGATAAGCGCTGAAGGACCAGTTTGCATCGCACACTCATTTGGAGGCCTGAACTTCACTTGTGGAGGACTGCCAGGCATTTGGTGCTGCAAACCTTGTTGTGATCAGTGAAGATCAACTCTCTGTTCAGATCTGTTTACATTCTTGCTTGAAGTGTTCAAAGAAATCCAATGTAAATGGGATTTGATCTACCTCCGTGTATTCTTGTTACCAATTTTACAAATTTGAGAGCAGTGCTATGCATTTTTGGGTCTGAACCTTCCTTGAGAAAATGCAGATATCTACCTCTTTGAATATCTCCTGAGCTTTCTGCCACAGCCTGACTGACTTTCAAGTAGAACTCATTTTCAAG_-_ATGGGGCATTCAGTTTTACTGCATATTTTGATTCTGAGTCTCTCTCTTTTTAACAAACTTGAGACTGCAAAGGGACGTTCTTTACTCGGGCCTACCTCTGCGCCAGTTTCTTTGCATTTCGCACTGTCATCGGCTTCCCTACTTGATGATCCCCTGGCAAAAAGAAATGCATCAACTAAACCAGAAAATTCAACCGGTTCTCCAATGCAGATAGACAAAGAATCTCATCACATCAACAAAGGACTGCTATTGGCAATTATCATACTGCCAATATTTGTTGGATGTATCATGATTTCTTCAGTTTGTACTTGGTTGTATAGAAAGACTTACAACTCTGATCCTTCTTCACCTCAACCTCATGCATTCAAGCGAAATTTAGATCCAGACGCCTCAGATGCCTATAGGGGTATTCCACTCATGCCTCTCCTGAGTCGTTTGAACTCCCGTGTTTCTAAGAAGAAGGGATGTGCAACCGCAATTGAATATTCTAAGCTGCTAACAGCTACAAATAACTTCAACAACAATAACATACGTGGAGAGGGTGGATTTGGGTGTGTATACAAGGCAATGTTTGATGATGATTCCTTTGCTGCTGTGAAGAAGCTAGATGAGGGTAGTAGACAGGCTGAGCATGAATTTCAGAATGAAGTGGAGCTAATGAGCAAAATCCGACATCCAAACCTTGTTTCTTTGCTTGGGTTCTGCACTCATGAAAATACACGGTTTTTAGTATACGATCTGATGCAGAATGGCTCTTTGGAAGACCAATTACATGGACCATCTCACGGATCTGCACTTACATGGTTTTTGCGGATGAAAATAGCCCTTGATTCAGCAAGGGGTCTAGAACACTTGCACGAGCACTGCAACCCTGCAGTGATTCACCGAGATTTCAAATCATCAAATATTCTTCTTGATGCAAGCTTCAACGCCAAGCTTTCAGATTTTGGTCTTGCAGTAAAAAGTGCAGGATGTGCTGGTAACACAAATATTGATCTAGTAGGGACATTGGGATATGTAGCTCCAGAATACATGCTTGATGGTAAATTGACAGAGAAAAGTGATGTCTATGCATATGGAGTTGTTTTGTTAGAGCTACTTTTTGGAAGAAAGCCAATTGATAAATCTCTACCAAGTGAATGCCAATCTCTCATTTCTTGGGCAATGCCACAGCTAACAGATAGAGAAAAGCTCCCGACTATAATAGATCCCATGATCAAAGGCGCAATGAACTTGAAACACCTATATCAAGTGGCAGCTGTTGCAGTGCTATGTGTGCAGCCAGAACCCAGTTACAGGCCATTAATAGCTGACGTTGTGCACTCTCTCATTCCTCTCGTACCAGTAGAACTTGGGGGAACATTAAAGTCATCACCCACTGAGATGAAGTCATTTGCTTCTTCCCAATGCAGTGCCAACGTTGCTTCCAACTCAAAATTGTGA___TTTGTAAATAATTAATTTCCCATCTCTGGATGGGGTTTGTCATATGCTTAAGAACACGTCATGTGACAATTATATTTTAAAATTTGTGGGCATATAGATTTATGTCCTTCTGTACACAGGGCGGCGGCTTAGGGTGACAACGTGGGCTGTAATTTATAGGTTGAATTTCACATCTGAGATAAAAGGAACATATTGGTCTCATTTCAAGGTCAGAGCTCTGATTGACCTAAGCTTTTTCAGTCAGGCGACATTTAAATGATTCATCTTGTTTAATGTTAATGGTGGTGGATTGGCTGTTTGAAGTTCCCCA

Fln Alignment:

Contig3704___STGSPMQIDKESHHINKGLLLAIIILP--IFVGCIMISSVCTWLYRKTYNSDPSSPQPHAFKRNLDPDASDAYRGIPLMPLLSRLNSRVSKKKGCATAIEYSKLLTATXXXXXXXIRGEGGFGCVYKAMFDDDSFAAVKKLDEGSR-QAEHEFQNEVELMSKIRHPNLVSLLGFCTHENTRFLVYDLMQNGSLEDQLHGPSHGSALTWFLRMKIALDSARGLEHLHEHCNPAVIHRDFKSSNILLDASFNAKLSDFGLAVKSAGCAGNTNIDLVGTLGYVAPEYMLDGKLTEKSDVYAYGVVLLELLFGRKPIDKSLPSECQSLISWAMPQLTDREKLPTIIDPMIKGAMNLKHLYQVAAVAVLCVQPEPSYRPLIADVVHSLIPLVPVELGGTLK
Q0V7T5______________SPGPPIVKVVLRQDLNKKILIALIVSSSLLCVTVMFLVYLLLWRYRNMKNSFTG------IKRK-----SDSVKSVTTKPTVHKIDS---VRKGTIPVYEYQLLESATNKFSDSNVLSRGGRGCLYRACLDEKSSVTVKKLDGGGETDIEKQFETEVDWLAKIRHQNIVSLLGFCVYRQTSCIVYELMQNGSLESQLHGPSQGSGLTWQLRMKIAVDIARGLEYLHEHCHPPVVHRDLKSSSILLDSDFNAKISDFGFAT----VLTTQNKNLI----HKASEDLLDGKVTDKNDVYSFGVILLELLLGKKSVEKP-SSEPESIVTWAVPKLSDRANLPNILDPAIKGTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLLPVELGGSLR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2020	10	90			0.999898
2100		41		58	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain