SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3703

Length: 2623 nt

UniGene Fasta

>sp_v3.0_unigene3703
TGCGAAAAAGAAAGAGGAGGAGAAACCAAAGGAGCGAGAAAAGCAGAAAACCCGTAATATAGATCATTTCATGGAAGAATTAAAGCTAGAGCAAGAGATGAGGGAAAAACGAAATCAAGAGCGTGAAAATCGGCGAGATGGAAGGCAAAGTGAAAGCTTGATGCCGATAAGTCGGTTTGATGAGCTGCCAGATGAGTTTGATCCAAGTGGAAGGCTGATTGGATCGTTTGATGATGGAGATCCTCAGACAACTAATCTTTATGTAGGAAATCTGTCACCTCAGGTGGATGAGAATTTTCTCCTGCGGACATTTGGTCGGTTTGGCCCTATTGCCAGTGTTAAAATAATGTGGCCAAGAACAGAAGAAGAACGAAGGAGGCAACGGAACTGTGGTTTTGTTGCTTTTATGAACAGAGCAGATGGTGAGGCAGCGAAAGATGAAATGCAAGGGGTCATTGTTTATGAGTATGAACTAAAGATTGGCTGGGGTAAATCTGTTACACTTCCTTCTCAAGCTCTCCCAGCACCACCACCAGGTCAAATGGCTGTCAGGAAGAAAGAGGGTACTATAATTACTTGGTCAGGGCCAGGCGGTCCACCACCTCATGCTGTAACTAGTCAGGCTTCTGAATTGATTTTAACTCCAAATGTTCCCGACATTGAGGTTATTCCTCCAGAAGATGAACATCTAAGACACGTGATTGACACTATGGCAATGTATGTGCTTGACGATGGTTGTGCATTTGAACAAGAAATAATGGAAAGGGGACGTGGCAATCCACTGTTCAATTTCCTATTTGACCTTGGATCAAAGGAACATACATACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGAGATACACTTCAAAGATGGCGGACAGAGCCTTTCATCATGATAACTGGAAGTGGGCGATGGATACCCCCACCTTTATCACAACAGCCAGGCATGAGAAGTCCAGAAAAGGAGAAGGATTCTGGTACAACTTATGCTGCTGGAAGGAGCAAGCGGGTTGATCTTGAGCGCTCCTTAACTGACAGTCAGAGAGATGAGTTTGAAGACATGCTGCGAGCTTTGACCTTGGAAAGAAGTCAGATAAAAGAAGCTATGGGTTTTGCCTTGGATAATGCTGATGCAGCAGGAGAGGTAGTTGAGGTTCTTACTGAATCACTGACCCTGAAGGAGACCCCAATTCCAACCAAAGTGGCCAGGCTTATGCTAGTTTCCGACATTCTTCATAACAGTAGTGCTCCAGTCAGGAATGCATCTGCTTATCGTACAAAATTTGAAGCCAGCTTACCTGATATTATGGAAAGTTTTAATGACCTATATCGAAATATCACTGGCCGGATTACTGCTGAAGCTTTGAAGGAAAGAGTTTTGAAAGTTCTCCAGGCTTGGGCAGACTGGTTTGTCTTTTCAGATGTTTATGTGAATGGACTGAGAGCTACTTTTCTTCGCCCTGGAAATTCAGGTGTTCCTCCTTTTCATACAATTTGCGGAGATGCACCACCAGTAAAGGACATTGACAATTCAGAGGATATTAGCAACAGCAAGTCAGAAGGAACCAGAGAAAGTCAAGATGCTGCATTGGCTATTGGAAAGGGAGCAGCAGCTAGAGAACTGTCGAGCCTTCCTCTTGCAGAACTTGAGAGGCGTTGTAGACATACAGGGCTTTCCATTCGTGGAGGTAGAGATCTGATGGTTGCACGGTTGCTTAGCTTAGAGGAGGCAGAGAAACAAAAGTCCCAAGATCAAGATGATTCCCTTCGATATGGGCCAGGGCAGAGCTATGCAGGGAAACATGGAAGGGAAATTAACAGTTCTAGATCAGAAGGACGTTGGAGCACTGGTAATGGTGGATGGAAAGAAGTCAACCATGGTGCTGGTAGGGAGTATAGGCTAGAATCAAGGCACAATGTCTTAGAAGAGTCAGCTCTTTGGCCACAATATGAAGACCATGACACAGATAATACGGTGGAAGGCACTCCCAGAGGAGCTGTGGACCAGTCTACTGTTACATTGGCTCCCAAATTGATGATTCCACAGCCAGACTTAAAACCATTTGCTAAAAAGTCTGGGAGAATGGATCCTGTTTTACCTGTTTCCAAATGGGCTCGAGAGGATGATGGAAGTGATGCTGAAGACAAGCAGGATCCTCGAGGTCTTGGTTTGAGTTATTCTTCCTCAAGTGAGGATAGTCTTTCTGGCAAGGGAAAAGGTGAAGAACAAGAAATGGCTGTGGAGAATAGCTTTCCTGCAGTCATCGATACTGGAATGAATGAAGAACACAGGCAAAAGTTACGGAGATTGGAAGTTGCAGTAATGGAGTATCGTGAGTCTCTTGAAGAATGTGGCATAAACAATGCAGAAGAAATTGAAAGGAAAGTATCTGCTCACAGAAGCAAACTGAAAGCTGAATTTGGTTTAATGGATGAAGCAGCTGACAATGACAAAAATAATAGTCGCATCTCAGAGAGCAGCTCCCCTGATCGAAAGGAACGGTGGGACGGGCATAGGCATTCATCTTCAAAGAAGCATATTCACAGCCACAGCTGCAGCAGGAGCCCTCATAAATCCAGTAGAGAGAGGGAGAGAGAGAGGGACAAGGATGGTGAGAGA

Ace file of the UniGene sp_v3.0_unigene3703

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative U2-associated SR140 protein [Oryza sativa Japonica Group]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	Gene names
Sma3	At5g25060; GSVIVT00032794001; MICPUN_63212; Os02g0179900; OsI_06097; OsJ_05621; P0544B02.29-1; P0544B02.29-2; PHYPADRAFT_193248; PHYPADRAFT_234486; POPTRDRAFT_819630; POPTRDRAFT_825788; RCOM_0920760; T30N20_70; VITISV_025939; VITISV_041624;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	3-phosphoshikimate 1-carboxyvinyltransferase activity	GO:0003866	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	mRNA splicing factor, Cwf21	IPR013170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G25060.1	RNA recognition motif (RRM)-containing protein chr5:8634219-8639984 REVERSE LENGTH=946	62%
RefSeq	Arabidopsis thaliana	NP_568464.1	U2-associated protein SR140 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002308714.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWA0

Fln msg: STOP codon was not found. Distance to subject end: 651 aas, your sequence is longer than subject: 874 - 397

Fln protein: AKKKEEEKPKEREKQKTRNIDHFMEELKLEQEMREKRNQERENRRDGRQSESLMPISRFDELPDEFDPSGRLIGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGEAAKDEMQGVIVYEYELKIGWGKSVTLPSQALPAPPPGQMAVRKKEGTIITWSGPGGPPPHAVTSQASELILTPNVPDIEVIPPEDEHLRHVIDTMAMYVLDDGCAFEQEIMERGRGNPLFNFLFDLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLSQQPGMRSPEKEKDSGTTYAAGRSKRVDLERSLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEVVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVRNASAYRTKFEASLPDIMESFNDLYRNITGRITAEALKERVLKVLQAWADWFVFSDVYVNGLRATFLRPGNSGVPPFHTICGDAPPVKDIDNSEDISNSKSEGTRESQDAALAIGKGAAARELSSLPLAELERRCRHTGLSIRGGRDLMVARLLSLEEAEKQKSQDQDDSLRYGPGQSYAGKHGREINSSRSEGRWSTGNGGWKEVNHGAGREYRLESRHNVLEESALWPQYEDHDTDNTVEGTPRGAVDQSTVTLAPKLMIPQPDLKPFAKKSGRMDPVLPVSKWAREDDGSDAEDKQDPRGLGLSYSSSSEDSLSGKGKGEEQEMAVENSFPAVIDTGMNEEHRQKLRRLEVAVMEYRESLEECGINNAEEIERKVSAHRSKLKAEFGLMDEAADNDKNNSRISESSSPDRKERWDGHRHSSSKKHIHSHSCSRSPHKSSRERERERDKDGER

Protein Length: 875

Fln nts: TGCGAAAAAGAAAGAGGAGGAGAAACCAAAGGAGCGAGAAAAGCAGAAAACCCGTAATATAGATCATTTCATGGAAGAATTAAAGCTAGAGCAAGAGATGAGGGAAAAACGAAATCAAGAGCGTGAAAATCGGCGAGATGGAAGGCAAAGTGAAAGCTTGATGCCGATAAGTCGGTTTGATGAGCTGCCAGATGAGTTTGATCCAAGTGGAAGGCTGATTGGATCGTTTGATGATGGAGATCCTCAGACAACTAATCTTTATGTAGGAAATCTGTCACCTCAGGTGGATGAGAATTTTCTCCTGCGGACATTTGGTCGGTTTGGCCCTATTGCCAGTGTTAAAATAATGTGGCCAAGAACAGAAGAAGAACGAAGGAGGCAACGGAACTGTGGTTTTGTTGCTTTTATGAACAGAGCAGATGGTGAGGCAGCGAAAGATGAAATGCAAGGGGTCATTGTTTATGAGTATGAACTAAAGATTGGCTGGGGTAAATCTGTTACACTTCCTTCTCAAGCTCTCCCAGCACCACCACCAGGTCAAATGGCTGTCAGGAAGAAAGAGGGTACTATAATTACTTGGTCAGGGCCAGGCGGTCCACCACCTCATGCTGTAACTAGTCAGGCTTCTGAATTGATTTTAACTCCAAATGTTCCCGACATTGAGGTTATTCCTCCAGAAGATGAACATCTAAGACACGTGATTGACACTATGGCAATGTATGTGCTTGACGATGGTTGTGCATTTGAACAAGAAATAATGGAAAGGGGACGTGGCAATCCACTGTTCAATTTCCTATTTGACCTTGGATCAAAGGAACATACATACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGAGATACACTTCAAAGATGGCGGACAGAGCCTTTCATCATGATAACTGGAAGTGGGCGATGGATACCCCCACCTTTATCACAACAGCCAGGCATGAGAAGTCCAGAAAAGGAGAAGGATTCTGGTACAACTTATGCTGCTGGAAGGAGCAAGCGGGTTGATCTTGAGCGCTCCTTAACTGACAGTCAGAGAGATGAGTTTGAAGACATGCTGCGAGCTTTGACCTTGGAAAGAAGTCAGATAAAAGAAGCTATGGGTTTTGCCTTGGATAATGCTGATGCAGCAGGAGAGGTAGTTGAGGTTCTTACTGAATCACTGACCCTGAAGGAGACCCCAATTCCAACCAAAGTGGCCAGGCTTATGCTAGTTTCCGACATTCTTCATAACAGTAGTGCTCCAGTCAGGAATGCATCTGCTTATCGTACAAAATTTGAAGCCAGCTTACCTGATATTATGGAAAGTTTTAATGACCTATATCGAAATATCACTGGCCGGATTACTGCTGAAGCTTTGAAGGAAAGAGTTTTGAAAGTTCTCCAGGCTTGGGCAGACTGGTTTGTCTTTTCAGATGTTTATGTGAATGGACTGAGAGCTACTTTTCTTCGCCCTGGAAATTCAGGTGTTCCTCCTTTTCATACAATTTGCGGAGATGCACCACCAGTAAAGGACATTGACAATTCAGAGGATATTAGCAACAGCAAGTCAGAAGGAACCAGAGAAAGTCAAGATGCTGCATTGGCTATTGGAAAGGGAGCAGCAGCTAGAGAACTGTCGAGCCTTCCTCTTGCAGAACTTGAGAGGCGTTGTAGACATACAGGGCTTTCCATTCGTGGAGGTAGAGATCTGATGGTTGCACGGTTGCTTAGCTTAGAGGAGGCAGAGAAACAAAAGTCCCAAGATCAAGATGATTCCCTTCGATATGGGCCAGGGCAGAGCTATGCAGGGAAACATGGAAGGGAAATTAACAGTTCTAGATCAGAAGGACGTTGGAGCACTGGTAATGGTGGATGGAAAGAAGTCAACCATGGTGCTGGTAGGGAGTATAGGCTAGAATCAAGGCACAATGTCTTAGAAGAGTCAGCTCTTTGGCCACAATATGAAGACCATGACACAGATAATACGGTGGAAGGCACTCCCAGAGGAGCTGTGGACCAGTCTACTGTTACATTGGCTCCCAAATTGATGATTCCACAGCCAGACTTAAAACCATTTGCTAAAAAGTCTGGGAGAATGGATCCTGTTTTACCTGTTTCCAAATGGGCTCGAGAGGATGATGGAAGTGATGCTGAAGACAAGCAGGATCCTCGAGGTCTTGGTTTGAGTTATTCTTCCTCAAGTGAGGATAGTCTTTCTGGCAAGGGAAAAGGTGAAGAACAAGAAATGGCTGTGGAGAATAGCTTTCCTGCAGTCATCGATACTGGAATGAATGAAGAACACAGGCAAAAGTTACGGAGATTGGAAGTTGCAGTAATGGAGTATCGTGAGTCTCTTGAAGAATGTGGCATAAACAATGCAGAAGAAATTGAAAGGAAAGTATCTGCTCACAGAAGCAAACTGAAAGCTGAATTTGGTTTAATGGATGAAGCAGCTGACAATGACAAAAATAATAGTCGCATCTCAGAGAGCAGCTCCCCTGATCGAAAGGAACGGTGGGACGGGCATAGGCATTCATCTTCAAAGAAGCATATTCACAGCCACAGCTGCAGCAGGAGCCCTCATAAATCCAGTAGAGAGAGGGAGAGAGAGAGGGACAAGGATGGTGAGAGA

Fln Alignment:

Contig3703___GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGEAAKDEMQGVIVYEYELKIGWGKSVTLPSQA----LPAPPPGQ
A9NWA0______________GFQSDNDPNNTTIFVGGLDPNATDEDLRQVFGPFGEIVYVKIPVGK---------GCGFVQFTNRSSAEEALQKLHGTIIGQQSIRLSWGRSPANKQTASWGVQPQPDPNQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2252	12		87		0.992554
2449	71	28			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain