SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3699

Length: 1594 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3699 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] ref\|NP_973621.1\| mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] sp\|Q9SP35.2\|TIM17_ARATH RecName: Full=Mitochondrial import inner mem	-	-	0.0	53%
FL-Next	sp=Mitochondrial import inner membrane translocase subunit Tim17; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Mitochondrial import inner membrane translocase subunit Tim17	-	-	4.31e-13	-

Source	Gene names
Sma3	At1g20350; At1g20350/F14O10_3; At2g37410; At5g11690; CHLREDRAFT_182566; F14O10.5; GSVIVT00016660001; LOC_Os03g30200; MICPUCDRAFT_14281; MICPUN_93255; OJ1123_C12.122; OSJNBb0040H10.15; OSJNBb0059G13.13; OSTLU_7704; Os03g0415500; Os07g0604500; OsI_12043; Os

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane	GO:0005741	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37410.1	ATTIM17-2, TIM17, TIM17-2 translocase inner membrane subunit 17-2 chr2:15698119-15698850 REVERSE LENGTH=243	62%
RefSeq	Arabidopsis thaliana	NP_181277.1	mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002329674.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SP35

Fln msg:

Fln protein: MGTPETSREPCPDRILDDVGGAFGMGAVGGSVFHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLSAQQQFPPMVEDVPNMQGPIPGFQGYGPIPANIGGPGAEPVQAPAQSSSWFGGFTGFFEGKKEESQHSGGGGKAEVLESFDQPSAPVPTFELK*

Protein Length: 232

Fln nts: TGACAGATTTGAGAGACTTTCCGTTTATGCGTATTTGTTGATGTTATTACAGATATAACATACCATCAGGAGCTCCTCCTTCGATACGGAGAAGGTAAGGAGATCCTAAATAGCGGCATAAGTGGGAATTATATACAGAAGGGTTTGTGCTTCCTCTGTTTTATATAAGCAGGTAAAGTCGTTTTAAGTTTGAAACCC_-_ATGGGCACGCCGGAGACATCGCGAGAGCCATGCCCTGATCGAATTCTAGACGATGTCGGTGGCGCCTTCGGCATGGGGGCGGTGGGAGGATCAGTTTTCCATTTGATGAAAGGAATTTACAATTCCCCCAAGGGTGAACGGATTCTTGGCGGCACGCAGGCCGTGAGGCTGAATGCCCCCCGTATTGGCGGAAGCTTCGCAGTGTGGGGCGGTCTTTTCTCGGCTTTCGATTGCTCGATGGTGTACGTCAGGCAAAAAGAGGACCCATGGAATTCTATAATCGCCGGAGCCGCCACCGGAGGGTTTCTGCAAATGCGGCAGGGGCCCAGGGCCGCTACCAGGTCCGCTATATTTGGTGGCGTTTTGCTTGCTTTGATAGAGGGTGCCGGGATTATGCTGAATAGGGTTTTGAGTGCGCAGCAACAGTTTCCGCCCATGGTTGAAGATGTGCCTAATATGCAGGGTCCTATTCCAGGGTTTCAAGGCTATGGACCCATCCCTGCCAATATTGGGGGTCCTGGAGCTGAGCCAGTTCAAGCTCCCGCCCAGAGTAGCTCCTGGTTTGGAGGATTCACTGGATTTTTTGAGGGCAAGAAAGAAGAATCTCAGCATAGTGGTGGTGGTGGAAAGGCTGAGGTTTTGGAGAGTTTTGATCAGCCCAGCGCTCCGGTGCCCACTTTTGAGTTAAAGTGA___TTCGGGAGATTTTGGTCTTTGTCGGCAGCAGCTACCAGGAATCAAAGAGAGTTTTCAGCTATCCATGCTATATGTGACCAGCTAATATAATTATGTAGTTCAAGGACGGGATTGATCCATCATGTCAAATTGACCTTGGTTGATGGAAATTCTCCTAATTTGAGTTCTGTGGCTGTTTACTCTTCAGAGCCGTAAGAAATTTTGTTTATTTATAGAGCTGTTTGGCTACGCATTAATTTATGTGAAGGCTGTGGAAATGAATGTGACAGGTGCGATGTGCTTTTTGCAAAGGGCTGACGAATAAAATGTAGCTGTAGGAGATTAGTGTATTTTTTATGCCAGTGGATGAGGGAAACACGTTTTTTCTTAAATGAACATAGATTATTTGTTTAGGACTTTTAGATAGGCTTATTGATGTTACAAATGTTACTTAGAATTCCTTTCCACAGGTTATCATGTAGTCTTTAGAAATGGTGCCTGGGAACTTACTGTATATATGTTTGTTAGAAGCTTTTATACAATTAGCACTGGTTGCTTCTTTTATTATTGTTGAGGAGTTTTTAAAAACTTTCCCAGAGAATTCATTATGGTGCTCAAGTTTCAAGATTACATTTTCTCAAAATGTGAGGCACTTATTTCAATTAAACTGCAGCTTAAAGTTCTGCTTTAAAATTAGTTTGGAAATCGGATATTGTCAATCCTG

Fln Alignment:

Contig3699___MGTPETSREPCPDRILDDXXXXXXXXXXXXXXFHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLSAQQQF---PPMVEDVPNMQG-----PIPGFQGYXXXXXXXXXXXXXPVQAPAQ-------XXXXXXXXXXXXXXXXXXSQHSGGGGKAEVLESFDQPSAPVPTFELK
Q9SP35______________MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIMLNKVLAQPQNMMMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQIRSESQNQNTASSSSSSSWFGGLFDKKKEEVQPGSESKTEVLESFDAP--PVPSFEFK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
228	33		66		0.997452
283			25	75	0.996473
316	75			25	0.996473
344	75			25	0.996473
347			75	25	0.996473
396	75		25		0.996473
630	75		25		0.996473
677	25	75			0.996473
906		15		84	1.0
996	83		16		1.0
1400			66	33	0.997452
1401			33	66	0.997452
1403		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
771	783	CCA CCA CCA CCA C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain