SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3696

Length: 2482 nt

UniGene Fasta

>sp_v3.0_unigene3696
ACCAGCAGTATATTTTATTGCAGCAGGCTCAAGCATTGTCTGGTCTGCCCAATCCGGTGCTGTCTACAATTGCTGGAAATGGTTCTAACTTGGGCCTCAGACCGCAAGGTCCTATGACAAATTTTCAACAACTTGAACAGCCTCACGGCATCCATCAAAGCGGAACAGCTACTGCAGAAGGAGATTGTGCTAGTCCTATTCCAGGTATGACAGGGACATTGGCTCATAATTACCCAGAGTTTCCTCTGCAAAGTGGAAACATTTCAAGGTATAACAGTCATTGTTTCTGTGGCAGTGGAGAAAGTTGCCCCTTTTCTAATTGTCATATGCAGCCTGTTGCAAGTACGAGGATGTCTCAACCTGGTTCTCTTTCACTCAAGGATCCTCGGATGGTTGCAATTTTGGATCAACAAGAAAAACCTAATTTTCCTGAAAGGATTTTGACTAGAAATGGTTCACGTGGTGTGAATTCCGTTACAACAATCAATTCATCATCTCCAGGGGGACGAAAAAAGGACTTGTTAAGTAATGGGCACGGTAGTGCAAGGCCATATTTAAATGGACAATATCCTTCTTCTTCATTTTCAGGGCCTTTTCAGTTGGATAATCGTGCAAATTCTAAAGGAATACCTTCTCGAATCACAGAACATGAGCTTTCATCCAATGTATTACCTAATCCTCAGCAGCAGCAAGCTAAATACAGTTCATTGGAAGAAGTAGAAGGCCGGATATATCTTATAGCAAAGGACCAACATGGCTGTCGTTTTCTACAGAAGAAGTTCGAGGAGGGGAGTCTTGAGGATGTGCAGAAAATTTTTGTGGAAATTATTGATCACATAATTGAACTCATGACTGATCCGTTTGGGAATTATCTTGTCCAAAAGCTTTTGGAGGTGTGCACTGAAGAACAGAAGATGCAAATACTTCTTGCAGTAACTAGGAAACCAAGCGAGCTTGTCAATATATCTCTTAACATGCATGGGACACGAGCTGTACAGAAATTGATAGAAACTTTAAAGACTGCAGAACAAATTTCTCTGGTTATAGCAGCACTTGAACCGGGTGTTGTTACTTTGATAAAGGACTTGAATGGCAATCATGTTGTACAGCGTTGTTTGCAACGCCTCACCAATGAAGACAATCAGTTCCTTTTTGATGCTGCAGCAAAACATTGTGTTGAGATTGCGACACACCGTCATGGATGCTGTGTTCTTCAACGATGTGTCGATCACTCCTCTGGAGCACAACGAGATTGTTTGGTGGCAGAAATAGCTGCCAATGGGTTTAGGCTATCTCAAGATCCATTTGGAAACTATGTTGTACAATATATTTTGGACTTTGACATCCCATGGGCAACGGGAAAAGTTATTACTCAACTTGAAGGGAACTATGTCTTTCTTTCAATGCAAAAGTTCGGCAGTAATGTGGTGGAAAAATGTTTGAAACTTTGTAAAGAAGAGCATCGTGTCACCATCATTAAGGAACTGTTAAGCAGTTCCCGACTTGGACAGCTTTTGCAGGATCCTTATGGAAACTATGTTGTTCAATCTGCTTTGGCAGTTTCTAAGGGTGCAATTCATGCTGCTTTAGTGGAAGCTATCCGGCCACATGTGCCAGCTTTGCGGAGCAGTCCGTTTGGGAAGCGAATTCTTTCACGTACCAATTTGAAGAAATAATATTTTTATTTGTGCAATTAATATGCGATTTTGAAGGACCTCTTGCTTTTGGCTATAGAGGGAAGCCTTGGTAGCAAAATGTGTTTTACGAGGCTGCAACTGTTTTTTAAGGGAGTATAGGGATTTATTATATTTTAGGATCATTGCTAGGACATGTAAAAATTAAGCCATTTGGCTGTGTAAACTTGCAATAAAACTGTACTGTCAGCTCAGGTCTTGCATCAGGTGGTTAAATTAAATGATAATATGCGGGTCCCCAGCTTACAGTTGTATAACATATTGCTATCATCATTGTTCTAGGGGAAAATGCAATTTTTCTTGACAGTATAGCACCCCCTTTAAGCATTAAAGGATTCTTTTGAAAAGTTTTGGTGGATGATGCAGATCAACAGACGGGTATTCACAAAGTTATCTCAAAAGAGTTTCCCTTGTAAGACACTCGGCATTGGCTGAGAGGCTGTAGGTATTAGCCAAACATTTTGATATTTAGCTTCTGTATGTTAGGAACAATGGCAGTTCCAGGACAAGATTTTATATTATACAAGGAGAAGATTCCTGTGAGACATTTATACTGGCAAGAAATACAAATAGAGATCGACATCCAGGCTTTGTAGTGATCCGATTCCCTGGCTGTGGCAATAAATAGGCTATTTCACAAATTTGTAGCTGATAATTTCCCAGATTTAGCATTTCTGGGACTCTACTGTTGTACCGTAAATATTTGTAATTTTCAATTACAATGGATCCACTTGTTGCACATTTTGACGAGAATAAACTCTTCAATTGTTTCAGTGGATTTTCTTGTA

Ace file of the UniGene sp_v3.0_unigene3696

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO	-	-	0.0	55%
FL-Next	sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	Pumilio-family RNA binding repeat containing protein, expressed	-	-	1.994e-11	-

Source	Gene names
Sma3	AT4g08840; At1g35730; At4g08840; CHLREDRAFT_129834; F14D7.3; F14D7.5; F16L1.3; GSVIVT00000276001; GSVIVT00014923001; GSVIVT00015242001; GSVIVT00024836001; GSVIVT00025478001; LOC_Os03g09150; LOC_Os11g37090; LOC_Os12g30520; LOC_Os12g31000; MICPUCDRAFT_19397

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	PDZ domain	IPR001478	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56510.1	APUM12, PUM12 pumilio 12 chr5:22881721-22883842 FORWARD LENGTH=596	59%
RefSeq	Arabidopsis thaliana	NP_200462.2	pumilio 12 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002297618.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LVC3

Fln msg: your sequence is shorter than subject: 558 - 596

Fln protein: QQYILLQQAQALSGLPNPVLSTIAGNGSNLGLRPQGPMTNFQQLEQPHGIHQSGTATAEGDCASPIPGMTGTLAHNYPEFPLQSGNISRYNSHCFCGSGESCPFSNCHMQPVASTRMSQPGSLSLKDPRMVAILDQQEKPNFPERILTRNGSRGVNSVTTINSSSPGGRKKDLLSNGHGSARPYLNGQYPSSSFSGPFQLDNRANSKGIPSRITEHELSSNVLPNPQQQQAKYSSLEEVEGRIYLIAKDQHGCRFLQKKFEEGSLEDVQKIFVEIIDHIIELMTDPFGNYLVQKLLEVCTEEQKMQILLAVTRKPSELVNISLNMHGTRAVQKLIETLKTAEQISLVIAALEPGVVTLIKDLNGNHVVQRCLQRLTNEDNQFLFDAAAKHCVEIATHRHGCCVLQRCVDHSSGAQRDCLVAEIAANGFRLSQDPFGNYVVQYILDFDIPWATGKVITQLEGNYVFLSMQKFGSNVVEKCLKLCKEEHRVTIIKELLSSSRLGQLLQDPYGNYVVQSALAVSKGAIHAALVEAIRPHVPALRSSPFGKRILSRTNLKK*

Protein Length: 559

Fln nts: ACCAGCAGTATATTTTATTGCAGCAGGCTCAAGCATTGTCTGGTCTGCCCAATCCGGTGCTGTCTACAATTGCTGGAAATGGTTCTAACTTGGGCCTCAGACCGCAAGGTCCTATGACAAATTTTCAACAACTTGAACAGCCTCACGGCATCCATCAAAGCGGAACAGCTACTGCAGAAGGAGATTGTGCTAGTCCTATTCCAGGTATGACAGGGACATTGGCTCATAATTACCCAGAGTTTCCTCTGCAAAGTGGAAACATTTCAAGGTATAACAGTCATTGTTTCTGTGGCAGTGGAGAAAGTTGCCCCTTTTCTAATTGTCATATGCAGCCTGTTGCAAGTACGAGGATGTCTCAACCTGGTTCTCTTTCACTCAAGGATCCTCGGATGGTTGCAATTTTGGATCAACAAGAAAAACCTAATTTTCCTGAAAGGATTTTGACTAGAAATGGTTCACGTGGTGTGAATTCCGTTACAACAATCAATTCATCATCTCCAGGGGGACGAAAAAAGGACTTGTTAAGTAATGGGCACGGTAGTGCAAGGCCATATTTAAATGGACAATATCCTTCTTCTTCATTTTCAGGGCCTTTTCAGTTGGATAATCGTGCAAATTCTAAAGGAATACCTTCTCGAATCACAGAACATGAGCTTTCATCCAATGTATTACCTAATCCTCAGCAGCAGCAAGCTAAATACAGTTCATTGGAAGAAGTAGAAGGCCGGATATATCTTATAGCAAAGGACCAACATGGCTGTCGTTTTCTACAGAAGAAGTTCGAGGAGGGGAGTCTTGAGGATGTGCAGAAAATTTTTGTGGAAATTATTGATCACATAATTGAACTCATGACTGATCCGTTTGGGAATTATCTTGTCCAAAAGCTTTTGGAGGTGTGCACTGAAGAACAGAAGATGCAAATACTTCTTGCAGTAACTAGGAAACCAAGCGAGCTTGTCAATATATCTCTTAACATGCATGGGACACGAGCTGTACAGAAATTGATAGAAACTTTAAAGACTGCAGAACAAATTTCTCTGGTTATAGCAGCACTTGAACCGGGTGTTGTTACTTTGATAAAGGACTTGAATGGCAATCATGTTGTACAGCGTTGTTTGCAACGCCTCACCAATGAAGACAATCAGTTCCTTTTTGATGCTGCAGCAAAACATTGTGTTGAGATTGCGACACACCGTCATGGATGCTGTGTTCTTCAACGATGTGTCGATCACTCCTCTGGAGCACAACGAGATTGTTTGGTGGCAGAAATAGCTGCCAATGGGTTTAGGCTATCTCAAGATCCATTTGGAAACTATGTTGTACAATATATTTTGGACTTTGACATCCCATGGGCAACGGGAAAAGTTATTACTCAACTTGAAGGGAACTATGTCTTTCTTTCAATGCAAAAGTTCGGCAGTAATGTGGTGGAAAAATGTTTGAAACTTTGTAAAGAAGAGCATCGTGTCACCATCATTAAGGAACTGTTAAGCAGTTCCCGACTTGGACAGCTTTTGCAGGATCCTTATGGAAACTATGTTGTTCAATCTGCTTTGGCAGTTTCTAAGGGTGCAATTCATGCTGCTTTAGTGGAAGCTATCCGGCCACATGTGCCAGCTTTGCGGAGCAGTCCGTTTGGGAAGCGAATTCTTTCACGTACCAATTTGAAGAAATAA___TATTTTTATTTGTGCAATTAATATGCGATTTTGAAGGACCTCTTGCTTTTGGCTATAGAGGGAAGCCTTGGTAGCAAAATGTGTTTTACGAGGCTGCAACTGTTTTTTAAGGGAGTATAGGGATTTATTATATTTTAGGATCATTGCTAGGACATGTAAAAATTAAGCCATTTGGCTGTGTAAACTTGCAATAAAACTGTACTGTCAGCTCAGGTCTTGCATCAGGTGGTTAAATTAAATGATAATATGCGGGTCCCCAGCTTACAGTTGTATAACATATTGCTATCATCATTGTTCTAGGGGAAAATGCAATTTTTCTTGACAGTATAGCACCCCCTTTAAGCATTAAAGGATTCTTTTGAAAAGTTTTGGTGGATGATGCAGATCAACAGACGGGTATTCACAAAGTTATCTCAAAAGAGTTTCCCTTGTAAGACACTCGGCATTGGCTGAGAGGCTGTAGGTATTAGCCAAACATTTTGATATTTAGCTTCTGTATGTTAGGAACAATGGCAGTTCCAGGACAAGATTTTATATTATACAAGGAGAAGATTCCTGTGAGACATTTATACTGGCAAGAAATACAAATAGAGATCGACATCCAGGCTTTGTAGTGATCCGATTCCCTGGCTGTGGCAATAAATAGGCTATTTCACAAATTTGTAGCTGATAATTTCCCAGATTTAGCATTTCTGGGACTCTACTGTTGTACCGTAAATATTTGTAATTTTCAATTACAATGGATCCACTTGTTGCACATTTTGACGAGAATAAACTCTTCAATTGTTTCAGTGGATTTTCTTGTA

Fln Alignment:

Contig3696___LPNPQQQQAKYSSLEEVEGRIYLIAKDQHGCRFLQKKFEEGSLEDVQKIFVEIIDHIIELMTDPFGNYLVQKLLEVCTEEQKMQILLAVTRKPSELVNISLNMHGTRAVQKLIETLKTAEQISLVIAALEPGVVTLIKDLNGNHVVQRCLQRLTNEDNQFLFDAAAKHCVEIATHRHGCCVLQRCVDHSSGAQRDCLVAEIAANGFRLSQDPFGNYVVQYILDFDIPWATGKVITQLEGNYVFLSMQKFGSNVVEKCLKLCKEEHRVTIIKEXXXXXXXXXXXXDPYGNYVVQSALAVSKGAIHAALVEAIRPHVPALRSSPFGKRILSRTNLKK
Q9LVC3______________LNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLSALSSKK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2209	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain