SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3687

Length: 1648 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3687

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport SEC13-like protein [Solanum tuberosum]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30050.1	transducin family protein / WD-40 repeat family protein chr2:12825540-12826448 FORWARD LENGTH=302	70%
RefSeq	Arabidopsis thaliana	NP_180566.1	protein transport protein SEC13 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002321555.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQI2

Fln msg:

Fln protein: MSSGVKQTGSQKFESGHQDVVHDVTMDYYGKSIATCSADRTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDGRVIIWREGQQENEWSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITVLTCREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIRKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGKVVIWTQGKEGDKWEGKLLNDFKIPVWRVNWSLTGNILAVADGNNSVTLWKEAVDGDWNQVTTVQ*

Protein Length: 310

Fln nts: AGTTTTAGATCATCTATGCTGCGCATCTCATTCCATCTTCTCAGCAAGGATACAGGCCTCGACCAAATATAATTTTAGTTTTGGACCATCTATACTGCGCATCTCATTCGATCTTCTCAATAAGGATACAAGGATACAGGCCGACGATGGACGGTTGAATAGATAAATTTCTACAGCTCGAAATCATCTGCTTGTTTCTCCTGCGAGCTTGCCTCTTTTTGATCCACCTCAGCTGGGCCAGAGAAAAACACGAGATCCGTGACAAGGGAAGGGCGGCAATTGCAAACTGGATCGAATTTTTACTGCCGAAGCTGCTTTCTTCCAGATTTGCGGATAAGGTTCTAGGGCTTCCATCGCTTGGCAAATACGAAGTGGCTTGGTCTTCCAGTTTGTTCCTTCTCCTCGGGCTGGCAGAAGAAGAAGGACGACAACAAATATACAGAACTCATCGATCAAT_-_ATGTCTTCAGGAGTGAAGCAAACGGGCAGTCAGAAGTTCGAATCCGGCCACCAAGATGTTGTCCATGACGTCACAATGGATTACTACGGGAAAAGCATAGCGACCTGCTCTGCGGATCGGACTATAAAGCTTTTCGGCCTGAACGCCTCCGATACCCCAACCCTTCTGGCCTCGCTTACGGGTCACGAAGGCCCTGTCTGGCAGGTCGCTTGGGCTCACCCAAAGTTCGGGTCCATGCTCGCTTCCTGCTCATATGACGGACGCGTAATAATCTGGCGAGAGGGTCAGCAGGAGAATGAATGGTCGCAGGTTCAAGTCTTCAAAGAGCACGAGGCCTCTGTGAATTCGATCTCATGGGCACCCAATGAATTGGGACTCTGCCTGGCCTGTGGTTCCTCTGACGGGTCCATAACCGTCTTGACATGCCGCGAGGATGGGTCCTGGGACAAAACGAAGATAGATCAAGCCCACCAGGTGGGCGTGACGGCAGTTTCATGGGCGCCCGCTTCCGCTCCCGGTTCCCTTGTGGGTCAGCCCTCAGATCCCATTCGGAAGCTCGTTTCTGGTGGGTGTGATAATACAGCTAAGGTTTGGAAATTTTACAATGGTTCTTGGAAGCTAGATTGTTTTCCTCCTCTTCAAATGCATACGGATTGGGTTCGGGATGTTGCTTGGGCGCCCAATTTAGGGCTTCCCAAGAGTACTATTGCTAGTTGTTCTCAGGATGGGAAGGTTGTTATATGGACACAGGGGAAAGAAGGGGATAAATGGGAAGGAAAACTTTTGAATGATTTTAAGATCCCCGTCTGGAGGGTCAACTGGTCCTTGACTGGAAACATCTTAGCTGTCGCTGATGGGAACAACAGTGTGACTCTTTGGAAGGAGGCAGTAGACGGGGATTGGAATCAGGTGACCACAGTACAGTGA___CAAATGTATGCTTCTTTTTACGATTTTGATTTCTTTCCGTTTTAGATTTTGTATTAATGTGCCAAACAGTGAGAACTCACAGGGTTTGTCGCCATATTTGCTTGCTAAAAGTTATTCATTGTAGTATTAAGTATTGCAAATCCGAATGAATATACCAGGAGGTTCCTTAATCACGGCAGATAATTATCTACTACTGTTGAATTTTTCTTGGATATGTTGTAAAACTGTTCACATATATTACTATGCTATTTAAATTTGGCAGAG

Fln Alignment:

Contig3687___MSSGVKQTGSQKFESGHQDVVHDVTMDYYGKSIATCSADRTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDGRVIIWREGQQENEWSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITVLTCREDGSWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIRKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGKVVIWTQGKEGDKWEGKLLNDFKIPVWRVNWSLTGNILAVADGNNSVTLWKEAVDGDWNQV
A9NQI2______________MSSGVKQMGSQKFESGHQDVVHDVTMDYYGKRIATCSADRTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSILASCSYDRRVIIWQEGQQENAWSQLQVFKEHEASVNSVSWAPHELGLCLACGSSDGSITVFTRREDESWDKTKIDQAHQVGVTAVSWAPASAPGSLVGQPSDPIQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHTDWVRDVAWAPNLGLPKSTIASCSQDGKVAIWTQGKEGDKWEGKILNDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWNQV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1471			11	88	0.923564
1473			11	88	0.923564
1474		77		22	0.999999
1517	93		6		0.999999
1518		6		93	0.999999
1572	6	93			0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain