SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3685

Length: 1198 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3685

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-galactonate transporter, putative n=1 Tax=Ricinus communis RepID=B9SVU4_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Major Facilitator Superfamily protein, expressed	-	-	1.564e-08	-

Source	Gene names
Sma3	ANTR5; At5g44370; CHLREDRAFT_130307; GSVIVT00036281001; K9L2.16; LOC_Os11g08370; LOC_Os12g07970; Os11g0186800; Os12g0180100; OsI_35403; OsJ_33231; OsJ_35427; PHYPADRAFT_173040; POPTRDRAFT_766974; RCOM_0127370; VITISV_043725;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G44370.1	" PHT4;6 phosphate transporter 4;6 chr5:17875147-17876445 REVERSE LENGTH=432"	65%
RefSeq	Arabidopsis thaliana	NP_199250.1	putative anion transporter 5 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002313576.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKH1

Fln msg: your sequence is shorter than subject: 379 - 671

Fln protein: LWSLTCALVPPDPRKVKTLVIARLLVGVAQGFIFPSIHTVLAQWVPPHERSRSVSLTMSGMYFGAAAGMLILPSLVQFKGPQAVFLAEATLGGMWALIWFKYASDPPHSDRTKASAVGFGKSTTYGNNKSLLPVITEKELVNSLLKDDIHRKKVEDGIETSHMTSIPWKSIMLSWSVWAIVVNNFTFHYALYVLMNWLPTYFEKGLQLSLQKMGSSKMLPYLNMFLFSNIGGVIADHLITRRLLSVTKTRKVLNTGGFVVAAFALMIMPSLRTSWGAVICSSVSLGFLALGRAGFAVNHLDIAPRYAGIVMGISNTAGTLAGVVGVGLTGQILESAKAAGMDLSNPNTWTQVFYVPALLCIFSAVIFLLFSTGERIFD*

Protein Length: 380

Fln nts: TGTTATGGTCCCTGACATGTGCATTGGTTCCACCCGATCCTAGGAAGGTTAAAACCCTGGTAATTGCTCGCCTTCTTGTAGGTGTAGCACAAGGTTTTATTTTTCCTTCAATTCACACTGTTTTGGCACAATGGGTTCCACCTCATGAACGATCTCGGTCTGTTTCCCTTACAATGTCAGGCATGTATTTTGGAGCAGCAGCAGGCATGCTTATTCTGCCTAGCTTGGTGCAATTCAAGGGTCCTCAAGCAGTTTTCTTAGCTGAAGCAACTTTGGGTGGCATGTGGGCATTGATCTGGTTTAAATATGCAAGTGACCCACCACATTCAGATCGTACAAAAGCCTCTGCAGTTGGCTTTGGAAAATCCACTACGTACGGAAACAATAAAAGTTTGCTGCCAGTTATAACAGAGAAAGAACTTGTAAATTCTCTGTTGAAAGATGATATACACAGAAAAAAGGTTGAAGATGGGATAGAGACCAGCCATATGACATCAATCCCTTGGAAAAGCATAATGTTAAGCTGGTCTGTTTGGGCCATTGTTGTGAACAATTTTACCTTCCATTATGCACTTTATGTCCTGATGAACTGGTTGCCAACATATTTTGAAAAGGGGTTGCAGCTGAGCCTTCAGAAAATGGGTTCTTCAAAGATGCTTCCCTACTTGAATATGTTCCTATTTTCTAATATAGGTGGAGTGATAGCTGATCATTTAATCACTAGGAGGTTACTGTCTGTGACAAAGACGAGGAAGGTTTTGAATACTGGGGGCTTTGTTGTTGCAGCTTTTGCGCTCATGATAATGCCTAGCTTACGAACTTCCTGGGGGGCTGTGATCTGCTCCTCTGTTTCTCTTGGGTTTCTTGCACTTGGAAGAGCAGGGTTTGCTGTTAACCACTTGGACATTGCCCCAAGGTATGCAGGGATAGTAATGGGAATTTCTAATACAGCAGGGACTTTGGCTGGTGTAGTTGGTGTAGGATTAACAGGTCAAATTCTTGAGTCTGCCAAAGCTGCAGGAATGGATCTCTCAAATCCAAACACCTGGACTCAGGTTTTTTATGTCCCGGCTTTGCTTTGCATATTTAGTGCTGTCATATTCTTACTGTTCTCAACAGGTGAGAGAATTTTTGATTAG___TCTCTTGGAAGGCTGAACGAAAGCTTAATGTCAAAATCCAAAGCTGAGAAATATTTAAT

Fln Alignment:

Contig3685___WSLTCALVPPDPRK-VKTLVIARLLVGVAQGFIFPSIHTVLAQWVPPHERSRSVSLTMSGMYFGAAAGMLILPSLVQFKGPQAVFLAEATLGGMWALIWFKYASDPPHSD---------------------RTKASAVGFGKSTTYG-------NNKSLLPVIT-----EKELVNSLLKD-DIHRKKVEDGIETSHMT----SIPWKSIMLSWSVWAIVVNNFTFHYALYVLMNWLPTYFEKGLQLSLQKMGSSKMLPYLNMFLFSNIGGVIADHLITRRLLSVTKTRKVLNTGGFVVAAFALMIMPSLRTSWGAVICSSVSLGFLALGRAGFAVNHLDIAPRYAGIVMGISNXXXXXXXXXXXXXXXQILESAKAAGMDLSNPNTWTQVFYVPALLCIFSAVIFLLFSTGERIFD
B8LKH1______________WSIATILTPIAARVGLPFLLLVRAFMGIGEGVAMPAMNNILSRWIPAKERSRSLALVYSGMYLGSVAGLAFSPFLIQKFSWPSVFYSFGSLGTIWFATWQRNAQSSPLEDLEIRPEEKEFILRNSELKEPVKTIPWKLLLSKAPVWALIVCHFCHNWGTFILLTWMPTYYNQAQSSPLEDLEIRPEEKEFILRNSELKEPVKTIPWKLLLSKAPVWALIVCHFCHNWGTFILLTWMPTYYNQVLKFNLTESGIFCVLPWLTMALSANLGGWIADTLVSRG-VSITTVRKVMQSIGFLGPAFFLTQLSHVRSPAMAVLCMTCSQGCDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQN-----------GSWDDVFKVAVGLYLVGTVVWNLFATGERVFD

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
199	25	75			0.996473
202		75		25	0.996473
347	25			75	0.996473
373		50		50	1.0
409		83		16	0.994512
410	83		16		0.994512
411			83	16	0.994512
648	25			75	0.996473
651	80			20	0.995493
652	80			20	0.995493
653	16		83		0.994512
797	14	85			0.993533
834		10		90	0.90298
837		25	75		1.0
838	83		16		0.999991
842		16	83		0.999991
852		16		83	0.999991
1068		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain