SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3656

Length: 1488 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3656 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative 9-cis-epoxycarotenoid dioxygenase n=9 Tax=Cupressaceae RepID=Q0EEH1_TAXDI	-	-	0.0	62%
FL-Next	tr=Putative 9-cis-epoxycarotenoid dioxygenase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	62%
Sma3	9-cis-epoxycarotenoid dioxygenase	-	-	1.09596e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on single donors with incorporation of molecular oxygen, With incorporation of two atoms of oxygen.	EC:1.13.11.-	-	3.235e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Benzoate degradation	00362		3.235e-06	%
Sma3	Tryptophan metabolism	00380		3.235e-06	%
Sma3	Arachidonic acid metabolism	00590		3.235e-06	%
Sma3	Xylene degradation	00622		3.235e-06	%
Sma3	Toluene degradation	00623		3.235e-06	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		3.235e-06	%
Sma3	Naphthalene degradation	00626		3.235e-06	%
Sma3	Aminobenzoate degradation	00627		3.235e-06	%
Sma3	Nitrotoluene degradation	00633		3.235e-06	%
Sma3	Betalain biosynthesis	00965		3.235e-06	%
Sma3	Metabolic pathways	01100		3.235e-06	%
Sma3	9-cis-epoxycarotenoid dioxygenase.	EC:1.13.11.51	-	2.123e-25	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Carotenoid biosynthesis	00906		2.123e-25	%
Sma3	Biosynthesis of terpenoids and steroids	01062		2.123e-25	%
Sma3	Biosynthesis of plant hormones	01070		2.123e-25	%
Sma3	Metabolic pathways	01100		2.123e-25	%
Sma3	Biosynthesis of secondary metabolites	01110		2.123e-25	%
Sma3	Beta-carotene 15,15'-monooxygenase.	EC:1.14.99.36	-	5.381e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		5.381e-10	%
Sma3	Metabolic pathways	01100		5.381e-10	%

Source	Gene names
Sma3	AT4G19170; At1g30100; At1g78390; At3g14440; At3g24220; At4g18350; At4g19170; CCD4; CCD4a; CCD4b; CPRD65; CitNCED2; CitNCED3; CmCCD4b; CmNCED3a; CmNCED3b; DNCED1; F28J12.10; F3F9.10; GSVIVT00000988001; GSVIVT00001161001; GSVIVT00001163001; GSVIVT0001394100

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chromoplast	GO:0009509	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	9-cis-epoxycarotenoid dioxygenase activity	GO:0045549	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	abscisic acid biosynthetic process	GO:0009688	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protamine P1	IPR000221	-	0.0	-
Sma3	Carotenoid oxygenase	IPR004294	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14440.1	NCED3, ATNCED3, STO1, SIS7 nine-cis-epoxycarotenoid dioxygenase 3 chr3:4831678-4833477 REVERSE LENGTH=599	55%
RefSeq	Arabidopsis thaliana	NP_188062.1	9-cis-epoxycarotenoid dioxygenase NCED3 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002316871.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q0EF51

Fln msg: your sequence is shorter than subject: 391 - 625

Fln protein: DLHGHGGLVRLLLHGARGLCGLVNTGKGMGVANAGLAFFNGRLLAMSEDDLPYAVRVTGDGDLVTLGRFDFDGQLHGSSSVIAHPSIDPDTGELFVLSYNVVRRPHLRYFHFNRDGTTFGPPVDIYIRHPTMVHDFAITKRHIIVPDQQMIFNIFRMFVGGSPVSCDREKIPRFGVMPRNDTDDGRMTWIDVPGCFCFHPVECRGREPDTNEVVVVGSCMTPPDGIFNEYPDKRSLRSILSEIRLNLTTGASVRIEIFPGLNLEAGQINRSYVGRRSRYAYMAIAEPWPRVSGIAKVNLESREIVAKFLFSEGCYGGEPYFVARSPASAEDDGYVVTFVNNENTGKSEFVILDARTPGLDVVASVKLPSRVPYGFHGTFINGDELARQGV*

Protein Length: 392

Fln nts: GACCTCCACGGCCACGGCGGGCTGGTGCGCCTGCTGCTGCACGGTGCCCGGGGACTCTGCGGGCTGGTCAACACCGGGAAGGGCATGGGCGTGGCCAATGCCGGGCTGGCCTTCTTTAACGGCCGTCTGCTCGCCATGTCCGAGGACGATCTCCCGTACGCCGTCAGGGTGACGGGCGACGGCGATCTGGTGACGTTGGGCAGGTTCGATTTCGACGGGCAGCTTCACGGGTCCTCATCGGTCATCGCGCACCCCAGCATCGACCCCGACACGGGCGAGCTTTTCGTCCTCAGCTACAACGTCGTCCGACGGCCGCACCTACGCTACTTCCACTTCAACCGCGATGGTACGACCTTCGGCCCGCCCGTCGACATCTACATCCGACATCCGACAATGGTGCACGACTTCGCTATTACGAAGCGCCACATCATCGTTCCAGATCAGCAAATGATCTTCAACATCTTCCGCATGTTCGTCGGAGGATCGCCGGTTTCGTGTGACAGGGAAAAGATCCCGCGCTTCGGCGTCATGCCGAGAAACGACACGGACGACGGAAGGATGACGTGGATTGACGTCCCCGGCTGCTTCTGCTTCCATCCTGTGGAATGCCGTGGGAGGGAGCCCGACACCAACGAGGTTGTCGTTGTCGGATCCTGCATGACGCCACCCGACGGAATCTTCAACGAATATCCCGACAAACGGTCCCTGAGAAGCATCTTGTCGGAAATAAGACTGAACCTGACAACCGGCGCCTCCGTCAGAATTGAGATTTTTCCGGGCCTAAACCTGGAGGCTGGGCAGATCAACAGAAGCTACGTCGGTCGACGCTCACGCTACGCTTATATGGCCATCGCGGAGCCGTGGCCCAGGGTATCCGGAATCGCCAAGGTCAACTTGGAGTCTAGGGAAATCGTGGCCAAGTTTCTCTTCTCCGAAGGTTGCTACGGAGGGGAGCCATACTTCGTCGCTCGCTCTCCTGCTTCCGCAGAGGACGACGGCTACGTGGTCACGTTCGTGAACAACGAGAATACGGGAAAATCGGAGTTCGTGATCCTGGACGCCAGGACCCCGGGCCTCGACGTCGTGGCCTCCGTCAAACTGCCCTCCCGGGTGCCCTACGGCTTCCATGGTACGTTTATAAATGGCGACGAGCTCGCTCGGCAAGGTGTGTAG___GACCTCACATTTTCCGTTGGACATATAAACAGTGCCCGATTATAAAGTTTGAATACAAGCTTGTAAATATTTGATGTAAGGATTGCCTCTATGTTTTCTGTAATTTAAATTGAGGTCCGTAGCGGCGGCAGAAGTAAAACCGTTTTTGTTTTTCTCAGATGTATGGACAAGTACTAAAACCAACTAGTTTTATTGTCTGAGATGTCTGCAAAAGTAAAACTAGTTTTGTTATTCTGACATGTGTGCAGAAGTAAAACCAGTTTTATTTTCTGAGATGCCTGTAGAAGTAAAGCCAGTTTTGTTTTTCGCCTGCAG

Fln Alignment:

Contig3656___GLVNTGKGMGVANAGLAFFNGRLLAMSEDDLPYAVRVTGDGDLVTLGRFDFDGQLHGSSSVIAHPSIDPDTGELFVLSYNVVRRPHLRYFHFNRDGTTFGPPVDIYIRHPTMVHDFAITKRHIIVPDQQMIFNIFRMFVGGSPVSCDREKIPRFGVMPRNDTDDGRMTWIDVPGCFCFHPVECRGREPDTNEVVVVGSCMTPPDGIFNEYPDKRSLRSILSEIRLNLTTGASVRIEIFPGLNLEAGQINRSYVGRRSRYAYMAIAEPWPRVSGIAKVNLES---REIVAKFLFSEGCYGGEPYFVAR--SPASAEDDGYVVTFVNNENTGKSEFVILDARTPGLDVVASVKLPSRVPYGFHGTFINGDELARQ
Q0EF51______________GLVDRSKGMGVANAGLIYFNGRLLAMSEDDLPYAVRVTEDGDLATLGRFDFDGQLQ--SAMIAHPKIDPETKELFALSYNVIKKPYLKYFMFSPDGRK-GPDVTISVKEPTMMHDFAITDKYVVVPDQQLVFKLQEMVAGGSPVIYDKEKVPRFGILPKYDSDESRMKWIEVPDCFCFH--LWNAWEENEDEVVVIGSCMTPPDSIFNE--SDAALRSVLSEIRLNLKTGKSSRRQLAP-MNLEAGQVNRNKLGRKARYVYLAIAEPWPKVSGIAKVDLEAESPERVVGKIEYKKGCYGGEPFFVPRTSNPEAPEDDGYVLTFMHNEETWQSELLILDAKSPTLEPVASVKLPSRVPYGFHGTFITSQELDQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain