SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3647

Length: 1332 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3647

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Xyloglucan endotransglycosylase	-	-	2.604e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At1g65310; At2g18800; At3g23730; At4g03210; At4g14130; At4g25810; At4g25820; At4g30270; At4g30280; At4g30290; At5g13870; At5g48070; At5g57530; At5g57540; At5g57550; At5g57560; At5g65730; EXGT; EXGT-A4; EXGT-A5; EXGT-A6; EXGT-N2; EX

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-
Sma3	primary root development	GO:0080022	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14130.1	XTR7, XTH15 xyloglucan endotransglucosylase/hydrolase 15 chr4:8137161-8138196 REVERSE LENGTH=289	61%
RefSeq	Arabidopsis thaliana	NP_193149.2	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002318936.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg:

Fln protein: MDTPLHLLFLLLASSAARASANFYNDVDITWGNDRAKILDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFNASAIPSFDAAAEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK*

Protein Length: 277

Fln nts: ACTGCTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACACAATGGAAATCAGGTGGCTGCCTCTTCTTCGTCGGATGTTTCCTCCCTCCCTCCATCCCTACCTTCCCTTCCCCACGCGCTGATGCCATAAGCCCTCCCTTTCTACATAAACCCTCACTCACCCCAAACCCATCCATTATCAACATCGACGCTCAAAATATATATATATATTCTCTGCACACATTTATTCTCATTTCTTGAACTGCACCTCTGCATCGCAAACTCTTTTCCCAATCCTTAATCGGC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTAGCCTCCTCGGCAGCTCGTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGCAATGATCGTGCTAAAATCCTTGACAATGGACAACAGTTGCAGCTTACTCTTGACCGCTCTTCAGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGACTTTGAATTTCTGGGCAACCTGTCTGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAGCAGCAATTTTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATTATATTTTCTGTAGACGGGAGTCCTGTTCGAGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCATTATCCCAAAACCCAAGCAATGAGGGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGGGGTGGGCTTGTGAAGACCGACTGGACTAAAGCTCCCTTTGTTGCATCCTTTCGCAATTTCAATGCTTCCGCTATTCCTTCTTTCGATGCCGCGGCAGAGGAGGTGGCGTTGGAATCGAACCAAGAACAGAGGCAGAGGCTCCAGTGGGTACGAAAGAACTACATGATCTACGATTATTGTGCAGACACCAAGAGATTCCCCCAGGGACCGCCTCCCGAATGCAAATAA___AACCTCAATCCTTTGAATTCAGAGAATGAACTCTGAATTCTTTCCTTCCAAGTATTCTCATTCATTTCTATTACATTAATTCTTTCATTCTTTCTCAGACACACATGTAAAATATTAGAGGGTATCAATCATTTCATTTTGGAACTGCTATACAAAAGCAAGATTCTTTTGATGATTCATCAATGGCTACAGCGTTTCCTTTTTGGTTACCGCATGT

Fln Alignment:

Contig3647___NFYNDVDITWGNDRAKILDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFNASAIPSFDAAAEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK
D5AED5______________NFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNFNAATSSSSDSAAEE-ALDSNQE--QRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
742		25		75	0.996473
760	60	20	20		0.99255
772	80		20		0.995493
802		20		80	0.995493
868		16		83	0.994512
910		75		25	1.0
938	62			37	1.0
963		87		12	0.992554
973		12		87	0.992554
997			12	87	0.992554
1005		87	12		0.992554
1102		16		83	0.994512
1213		29		70	1.0
1227	29		70		1.0
1233			70	29	1.0
1260	71			28	1.0
1265		71	28		1.0
1272	88		8		0.999999
1277	68	8	22		1.0
1278	68		31		1.0
1294	10			90	0.90298
1296	85	14			0.993533
1302			60	40	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
83	95	CCTC CCTC CCTC C	13
199	212	AT AT AT AT AT AT AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain