SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3632

Length: 2659 nt

UniGene Fasta

>sp_v3.0_unigene3632
AGCAGCAGCTGCTGAGGCAAGCCAAGCGAACTCTTGTGGTGTTGGATGATGTCTGGTCTAAGGCAATTTTGGAAAAATTGTTATTTGAAGTTGAAGGTTTAAAGACCCTTGTGACAACCCGAGACCGTTCTATCATCCGCACAACAACCTCTACCAGGCTTTATGAATTGCCATTGCTGGATGATGACGATGCTCTGCCTCTTTTCTGCTTTTGGGCTTTTGGACAGAAATCAATTCCAAGTAATGCGGACGAGCAGCTAGTCATGCAGGTACAAGCGGAATGTAAAGGCCTACCACTTGCTCTAAAGGTGATTGGAAGCTCTTTGCATGGGCAGCCTCATCCGGCGTGGGAGAGTGCCAAAAACAAGCTTTTAAATGGAAAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAGATGCTTGGAAACCAGTGTTGATGTCCTGGATGAGGAAGCACGGGAGTGCTTCTTAGACTTGGGATCATTTCCAGAGGATAGAAAAATCTCAGTGGATGCATTGCTAGATATTTGGGTTTATGTGCGGAAGATAGAGTGGCATGATGCTTTTGTCATCTTATTAGAACTTGCAGGCAGGAATCTGTTGAATTTAACAAGCAATCTGAGATGCAGTAGAAGCCAAGCAATCGATTATGGCAGTGCCTCTGAGCTGTACTTTTATCAACATGATGTAATGAGAGACTTGGCCCTATATTTGGCATCCCGTCGCAGTATAGTTCGTAGGAAGAGTTTGCTTATGGCTAAAAAGGAGGACAGTTTGCCAGCAAAATGGGAGCTGTTCAAGGATCAAGCATTCGATGCTCAAATTGTTTCCATTCACACAGGTGCAATGAAAGACGATCAGTGGTGTGAGATGAATTTTCCTCAAGCAGAGGTTTTGGTCTTACTCTTCTCTGCAAGCACATACTTTCTTCCATCCTTTTTGGCTTCTATGAGAAAACTGAAAGTCCTCATAGTATTCAATTATGGGTCCAAGAGAACTACAGTGAACGGTCTACAGGCCTTATCTTCACTTACTCAGCTTAAGACTATTCACTTGGAGAAGTTGAATGTGCCCCGCCTTCAAGAGCACAATAATGTCTTGGAAAACTTAGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAATATGTCCAGGTTCAACAGCTCCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTAGACCACTGCTGTGATTTAGAAGAGCTGCCCCCTGGCATATGTGACACATCTTCAGTTGAGAAGTGGTCTATCACTAACTGTCACCTTCTTCAAAAGTTGCCTGATGACTTGGGGAAGCTCAGCTCTTTAAGAATGTTAAGGGTATCTGCATGTCTAGGTCTGAAAGAGCTTCCAGCATCTATTGGAAAACTTGGAAAGCTGGAATATCTGGACATTTCGCTATGCGAGTGCCTAAATGAACTTCCGGAGGAAATAGGACAACTAAAGAAACTTGAAGAGCTTGACATGAGAGAATGTTCTCGTGTGAGGAAGCTGCCTAAATCAGTTGCAGGGCTGAGATGTCTAAAGCATGTTATCTGTGATGAGAAGATTGGACAACAATGGATGCGTGTCAAGAGCTCTGCCATCCCGGACCTTAGAGTTGAAATTGTAGATGCACACTTTAGCCTGGATTGGCTGGACGCTTGATATCGTACCTAGACAGCAAGGGATTGAGCCATGCGTTGGCAAGAGATCAAGAAAACATCCTACCTAGACAGCAAAGACAGCAAGGGATTGAGTCATACGCTGCTAGAGATCAAGAAGACCGCCTACCTACAGAGCAAAGATTTAAATCATAAACTGCTTATCACGTGCATTTATGGTGGAGAGATCGTGTTGGACGGGATAAGACGACTCTGCAATCATGTCCCATTTCTTCCAAAAAAATCTGTATACACGGAGTACGTCATTCCAACTAACTACTTGCCTCTGCACGGAGTACATCATTCCAACTAACTAACTACTTGCCGGAGTACATCTAGTCCTCATGGCAACATTTAGGCCTTTGGAAATATCATAAGTGCCGTGTTCATTTTTATATGTGCTGGACTGTATGCGTGGACAAGAGTGAACCAGGTGGAATCATTAAGAAAGACGAGAATTACTTACGCAGACCTGAGTTAAAATGGGAAACATTACAGGTATTGAAAAGTCTCCAAGTTCCAGTTGAGCAGACTGAGATGATGATCTGGCTTCCGCTACTAAATCACTAGTAACATATCTATCTTTCACAAATCCAATGTAGATGGATACTTCTTTTATCCTTATTCCCTTTGAGGATCTTTTGTACATATATCTCATGTAATGACTTTTTTGTATATATATGTATCTCTATCAAGCATCTTGAAGTGAAGTCTATCAGTGTAAATGTAAATAGTGACCTCTCTTACAAAGGATTCTTTTTGTAAATTATCTCCTTTTGTAAAAAGATTTATCTATCAAGAATCCTGAAGTGAAGTCCATGAATGTGAAATGTAAATGGCCAATTCTCTTCCATACAAGAATCCTTTGTTATTTTTATGACAGTAATAAACATGTTTTGCAATGTGAAGTCCTTATTCCAGACAAGGATCCTTTGTAATGTTTTGCTTTATTTTATGCAAATAATAGACATGTTAACTAAC

Ace file of the UniGene sp_v3.0_unigene3632

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Putative CC-NBS-LRR protein	-	-	-

Source	Gene names
Sma3	ADR1; At1g33560; At4g33300; At5g04720; CKD1; CKD10; CKD14; CKD18; CKD24-1; CKD25; CKD29; CKD32; CKD33; CKD38; CKD41; CKD45; CKD69; CKD7; CKD74; CKD86; CKD9; CKF4; F10C21.19; F17M5.60; GDF6-1; GDF6-12; GDF6-16; GDF6-26; GDF6-33; GDF6-56; GDF6-58-27; GDF8-1

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002301203.1	nbs-lrr resistance protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQB7

Fln msg: your sequence is shorter than subject: 560 - 726

Fln protein: QQLLRQAKRTLVVLDDVWSKAILEKLLFEVEGLKTLVTTRDRSIIRTTTSTRLYELPLLDDDDALPLFCFWAFGQKSIPSNADEQLVMQVQAECKGLPLALKVIGSSLHGQPHPAWESAKNKLLNGKSISDYHKEGLLRCLETSVDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWHDAFVILLELAGRNLLNLTSNLRCSRSQAIDYGSASELYFYQHDVMRDLALYLASRRSIVRRKSLLMAKKEDSLPAKWELFKDQAFDAQIVSIHTGAMKDDQWCEMNFPQAEVLVLLFSASTYFLPSFLASMRKLKVLIVFNYGSKRTTVNGLQALSSLTQLKTIHLEKLNVPRLQEHNNVLENLEKLSLSLCEGLGNMSRFNSSQSSLKLPIMLDFNLDHCCDLEELPPGICDTSSVEKWSITNCHLLQKLPDDLGKLSSLRMLRVSACLGLKELPASIGKLGKLEYLDISLCECLNELPEEIGQLKKLEELDMRECSRVRKLPKSVAGLRCLKHVICDEKIGQQWMRVKSSAIPDLRVEIVDAHFSLDWLDA*

Protein Length: 561

Fln nts: AGCAGCAGCTGCTGAGGCAAGCCAAGCGAACTCTTGTGGTGTTGGATGATGTCTGGTCTAAGGCAATTTTGGAAAAATTGTTATTTGAAGTTGAAGGTTTAAAGACCCTTGTGACAACCCGAGACCGTTCTATCATCCGCACAACAACCTCTACCAGGCTTTATGAATTGCCATTGCTGGATGATGACGATGCTCTGCCTCTTTTCTGCTTTTGGGCTTTTGGACAGAAATCAATTCCAAGTAATGCGGACGAGCAGCTAGTCATGCAGGTACAAGCGGAATGTAAAGGCCTACCACTTGCTCTAAAGGTGATTGGAAGCTCTTTGCATGGGCAGCCTCATCCGGCGTGGGAGAGTGCCAAAAACAAGCTTTTAAATGGAAAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAGATGCTTGGAAACCAGTGTTGATGTCCTGGATGAGGAAGCACGGGAGTGCTTCTTAGACTTGGGATCATTTCCAGAGGATAGAAAAATCTCAGTGGATGCATTGCTAGATATTTGGGTTTATGTGCGGAAGATAGAGTGGCATGATGCTTTTGTCATCTTATTAGAACTTGCAGGCAGGAATCTGTTGAATTTAACAAGCAATCTGAGATGCAGTAGAAGCCAAGCAATCGATTATGGCAGTGCCTCTGAGCTGTACTTTTATCAACATGATGTAATGAGAGACTTGGCCCTATATTTGGCATCCCGTCGCAGTATAGTTCGTAGGAAGAGTTTGCTTATGGCTAAAAAGGAGGACAGTTTGCCAGCAAAATGGGAGCTGTTCAAGGATCAAGCATTCGATGCTCAAATTGTTTCCATTCACACAGGTGCAATGAAAGACGATCAGTGGTGTGAGATGAATTTTCCTCAAGCAGAGGTTTTGGTCTTACTCTTCTCTGCAAGCACATACTTTCTTCCATCCTTTTTGGCTTCTATGAGAAAACTGAAAGTCCTCATAGTATTCAATTATGGGTCCAAGAGAACTACAGTGAACGGTCTACAGGCCTTATCTTCACTTACTCAGCTTAAGACTATTCACTTGGAGAAGTTGAATGTGCCCCGCCTTCAAGAGCACAATAATGTCTTGGAAAACTTAGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAATATGTCCAGGTTCAACAGCTCCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTAGACCACTGCTGTGATTTAGAAGAGCTGCCCCCTGGCATATGTGACACATCTTCAGTTGAGAAGTGGTCTATCACTAACTGTCACCTTCTTCAAAAGTTGCCTGATGACTTGGGGAAGCTCAGCTCTTTAAGAATGTTAAGGGTATCTGCATGTCTAGGTCTGAAAGAGCTTCCAGCATCTATTGGAAAACTTGGAAAGCTGGAATATCTGGACATTTCGCTATGCGAGTGCCTAAATGAACTTCCGGAGGAAATAGGACAACTAAAGAAACTTGAAGAGCTTGACATGAGAGAATGTTCTCGTGTGAGGAAGCTGCCTAAATCAGTTGCAGGGCTGAGATGTCTAAAGCATGTTATCTGTGATGAGAAGATTGGACAACAATGGATGCGTGTCAAGAGCTCTGCCATCCCGGACCTTAGAGTTGAAATTGTAGATGCACACTTTAGCCTGGATTGGCTGGACGCTTGA___TATCGTACCTAGACAGCAAGGGATTGAGCCATGCGTTGGCAAGAGATCAAGAAAACATCCTACCTAGACAGCAAAGACAGCAAGGGATTGAGTCATACGCTGCTAGAGATCAAGAAGACCGCCTACCTACAGAGCAAAGATTTAAATCATAAACTGCTTATCACGTGCATTTATGGTGGAGAGATCGTGTTGGACGGGATAAGACGACTCTGCAATCATGTCCCATTTCTTCCAAAAAAATCTGTATACACGGAGTACGTCATTCCAACTAACTACTTGCCTCTGCACGGAGTACATCATTCCAACTAACTAACTACTTGCCGGAGTACATCTAGTCCTCATGGCAACATTTAGGCCTTTGGAAATATCATAAGTGCCGTGTTCATTTTTATATGTGCTGGACTGTATGCGTGGACAAGAGTGAACCAGGTGGAATCATTAAGAAAGACGAGAATTACTTACGCAGACCTGAGTTAAAATGGGAAACATTACAGGTATTGAAAAGTCTCCAAGTTCCAGTTGAGCAGACTGAGATGATGATCTGGCTTCCGCTACTAAATCACTAGTAACATATCTATCTTTCACAAATCCAATGTAGATGGATACTTCTTTTATCCTTATTCCCTTTGAGGATCTTTTGTACATATATCTCATGTAATGACTTTTTTGTATATATATGTATCTCTATCAAGCATCTTGAAGTGAAGTCTATCAGTGTAAATGTAAATAGTGACCTCTCTTACAAAGGATTCTTTTTGTAAATTATCTCCTTTTGTAAAAAGATTTATCTATCAAGAATCCTGAAGTGAAGTCCATGAATGTGAAATGTAAATGGCCAATTCTCTTCCATACAAGAATCCTTTGTTATTTTTATGACAGTAATAAACATGTTTTGCAATGTGAAGTCCTTATTCCAGACAAGGATCCTTTGTAATGTTTTGCTTTATTTTATGCAAATAATAGACATGTTAACTAAC

Fln Alignment:

Contig3632___QQLLRQAKRTLVVLDDVWSKAILEKLLFEVEGLKTLVXXXXXXXXXXXXXXXLYEXXXXXXXXXXXXFCFWAFGQKSIPSNADEQLVMQVQAECKGLPLALKVIGSSLHGQPHPAWESAKNKLLNGKSISDYHKEGLLRCLETSVDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWHDAFVIXXXXXXXXXXXXTSNLRCSRSQAIDYGSASELYFYQHDVMRDLALYLASRRSIVRRKSLLMAKKEDSLPAKWELFKDQAFDAQIVSIHTGAMKDDQWCEMNFPQAEVLVLLFSASTYFLPSFLASMRKLKVLIVFNYGSKRTTVNGLQALSSLTQLKTIHLEKLNVPRLQEHNNVLENLEKLSLSLCEGLGNMSRFNSSQSSLKLPIMLDFNLDHCCDLEELPPGICDTSSVEKWSITNCHLLQKLPDDLGKLSSLRMLRVSACLGLKELPASIGKLGKLEYLDISLCECLNELPEEIGQLKKLEELDMRECSRVRKLPKSVAGLRCLKHVICDEKIGQQWMRVKSSAIPDLRVEIVDAHFSLDWLD
C0PQB7______________QQLLRQAKPTLVVLDDVWSRANLENLLFEGEGYKTLVTTRDRSTIPTTTSIRIYELPVLDDADAMPLFCFWAFGQKSIPSSADEHLVKQVQAECKGLPLALKVIGSSLHGEPRPVWESAKNKLRNGESISDYHKEGLLRRLESSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELARRNLLNLTSNLR---SRAINYGSASELYFSQHDVMRDLALHLASRDRIVQRKRLFMPKKEESLPGKWEVLKDQAFDAQVVSIHTGAMEEDQWCEMNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLLAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQKWLRVKSSVLKELRVEIVDAHFSLDWLD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
2276		10		90	0.90298
2279	88	11			0.923564
2287	88	11			0.923564
2293			14	85	0.993533
2295		14		85	0.993533
2299		85		14	0.993533
2300		14		85	0.993533
2301	14			85	0.993533
2417		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1986	1998	AACT AACT AACT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain