SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3618

Length: 1760 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3618

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	actin-related protein 7 [Arabidopsis thaliana] sp\|Q8L4Y5.1\|ARP7_ARATH RecName: Full=Actin-related protein 7 gb\|AAM53247.1\|AF507915_1 actin-related protein 7 [Arabidopsis thaliana] gb\|AAM20512.1\| actin -like protein [Arabidopsis thaliana] tpg\|DAA00028.1\| T	-	-	0.0	67%
FL-Next	sp=Actin-related protein 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Actin-related protein ARP7	-	-	1.539e-09	-

Source	Gene names
Sma3	AC100; ARP1503; ARP1510; ARP7; ARP902; ARP903; At3g60830; GSVIVT00010436001; GSVIVT00028776001; OsI_13767; OsJ_12834; PHYPADRAFT_112296; PHYPADRAFT_60323; POPTRDRAFT_706403; POPTRDRAFT_833195; RCOM_0968110; T4C21.240;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	anatomical structure morphogenesis	GO:0009653	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Actin, conserved site	IPR004001	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60830.1	ATARP7, ARP7 actin-related protein 7 chr3:22474298-22476000 FORWARD LENGTH=363	67%
RefSeq	Arabidopsis thaliana	NP_567105.1	actin-related protein 7 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002298428.1	actin related protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8L4Y5

Fln msg:

Fln protein: MEAVVIDAGSSLLKAGYAVPDRNPAMVIPIKMRGIVEDDQSADVEVLQDISVDPIVRGVIKNWDAMEDLLQYVFYTGLGWEVGNEGQVLFADPLLTPKGVREQLVQLMFEAFNVSGYYASEQAVLSIYAAGRISGCAVDVGHGKIDIAPVWEGAVLHNASKKLEIGGMDLTELFARELGKSNPKVSLDLSIVENLKETYACTAEDEKVYEEKSNTFQEEKHTLPDGQVIAIGKERYTVGEALFQPSILGIEEYSIVEQLIRCSSCLPYENQRQILENIVLCGGTPSMSGFEDRFQKEAILASSVRPALVKPPEYMSENMLRNSAWIGGAILAKAVFLQNQHITKAEYDESGPTIIHRKCF*

Protein Length: 362

Fln nts: GTGATAGTGAGATCCATGATTTGAAAACCGTTCCTTCTGTAAATATTTCTTCAATTCCTTTGGAATTCCCTCCCGACCTTCGCCGTCACTCATGTTAATTTTGAAAAAAGGATAGTAGGAGAATCCCTTTTTAAGTCTGATAGCCCCCAACCCAAGAAGGTATAAACAGAAGAATCCATGTTCCTCCTGTTCATAATATCGATTCAGCTGAGTCATATATTTTGAACAGGTTGATAAACCCAGCAGATTGCTGTGAAACCTTTGTTTTAGACACTTCTGTGTATTTTTCCGGTAGCACGTGGAGAGTACCGTAGAGTTAGGATCAGGCAAGGAAAATAGTGAAAATCAGAGCGTTGAACG_-_ATGGAAGCAGTGGTCATCGATGCAGGTTCGAGTCTTCTCAAGGCAGGCTATGCTGTACCCGACAGGAACCCAGCCATGGTAATTCCTATTAAAATGCGAGGCATCGTTGAGGATGATCAATCAGCAGATGTAGAAGTGTTGCAAGATATTAGTGTTGATCCAATTGTCAGGGGTGTTATAAAAAATTGGGATGCTATGGAAGATTTGTTGCAATATGTATTTTATACCGGACTTGGTTGGGAAGTTGGCAATGAAGGGCAAGTTCTATTTGCAGATCCTCTTCTTACTCCAAAGGGCGTGAGAGAGCAGCTGGTTCAACTCATGTTTGAAGCTTTTAATGTGTCGGGATATTATGCATCTGAACAAGCAGTTTTATCAATTTATGCTGCTGGAAGGATATCTGGTTGTGCTGTTGATGTTGGTCATGGAAAGATAGATATTGCACCTGTCTGGGAAGGCGCTGTCTTGCATAATGCTTCGAAGAAATTGGAGATTGGAGGCATGGATTTAACTGAGCTGTTTGCTCGGGAACTTGGCAAATCAAATCCCAAAGTTAGTCTTGATCTATCGATTGTTGAGAATTTGAAGGAGACGTATGCATGCACTGCTGAGGATGAGAAGGTATACGAGGAAAAAAGCAATACATTCCAGGAAGAGAAACATACTCTGCCAGATGGGCAGGTTATAGCAATTGGCAAGGAACGATACACAGTAGGAGAAGCTTTATTTCAACCTTCCATATTGGGAATTGAAGAGTATAGTATTGTTGAGCAACTAATTCGTTGTTCCTCGTGTCTGCCTTACGAGAATCAGAGGCAAATCCTAGAAAATATTGTTCTATGTGGTGGCACACCAAGTATGTCTGGTTTTGAAGATCGTTTTCAAAAGGAAGCAATTCTAGCATCATCAGTCCGTCCTGCACTTGTAAAGCCTCCTGAATATATGTCAGAGAACATGTTGAGGAATTCAGCTTGGATTGGAGGTGCTATCTTGGCCAAAGCGGTCTTCCTCCAGAATCAACATATCACAAAGGCAGAGTATGACGAATCTGGGCCAACTATCATTCATAGGAAATGCTTCTAA___AATATCAATTTATCACTCTTATGCATACAAAAGTTGTTATTTTTCATTGTGTTGGATATCATGTTGAGGAATTTGTTTTAGATTAGAGGTGGGGTCTTGGTGAATGCCATCTTTCCTCATCAGTGTATCACAAACACAATGGATGATGAATCTGGGTCATCTATGATTCATGTGAAATGCTAATAATGACATTTGCAATAAGTGAAGGATGAAGCATCACGAACTTAGAAATTTTCTTACGAATGAAGATTTTTGTGCACTATGACCCTTTTCTTTTCTCTTAATTATGACAATATGTGTTCTTTTTTACAGCTCCA

Fln Alignment:

Contig3618___MEAVVIDAGSSLLKAGYAVPDRNPAMVIPIKMRGIVEDDQSA---DVEVLQDISVDPIVRGVIKNWDAMEDLLQYVFYTGLGWEVGNEGQVLFADPLLTPKGVREQLVQLMFEAFNVSGYYASEQAVLSIYAAGRISGCAVDVGHGKIDIAPVWEGAVLHNASKKLEIGGMDLTELFARELGKSNPKVSLDLSIVENLKETYACTAEDEKVYEEKSNTFQEEKHTLPDGQVIAIGKERYTVGEALFQPSILGIEEYSIVEQLIRCSSCLPYENQRQILENIVLCGGTPSMSGFEDRFQKEAILASS-VRPALVKPPEYMSENMLRNSAWIGGAILAKAVFLQNQHITKAEYDESGPTIIHRKCF
Q8L4Y5______________MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQELGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQNC-EIEQHTLPDGQVISIGRERYSVGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKEANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
780			11	88	0.923564
781			11	88	0.923564
790	90			10	0.90298
960		71	28		1.0
1182	83			16	0.999991
1183	50	33	8	8	1.0
1191	83	16			0.999991
1276		90		10	0.90298
1278	10			90	0.90298
1282			90	10	0.90298
1283		90	10		0.90298
1284	90		10		0.90298
1290	90	10			0.90298
1292	90	10			0.90298
1293			90	10	0.90298
1383	70		30		1.0
1413			10	90	0.90298
1414			88	11	0.923564
1416	11		88		0.923564
1419	88			11	0.923564
1420	88			11	0.923564
1423	88		11		0.923564
1427		11		88	0.923564
1491		50		33	1.0
1539			42	57	1.0
1577		57		42	1.0
1579	57		42		1.0
1581		42		57	1.0
1582	42		57		1.0
1626		42		57	1.0
1628	42		57		1.0
1629	42		57		1.0
1634		28	57		1.0
1644	66		33		1.0
1658	60		40		1.0
1666		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain