SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3615

Length: 2490 nt

UniGene Fasta

>sp_v3.0_unigene3615
TGTCTCGAACCCTAGTTATTGCTTGCAATTTTCAAATTTAAGTTTGGAACCTCTATCCGGGATGGGGTGAACACTAGTAAGATTTGAAGAAAAAGGAAAACAGGGGTAAAAAATGGCTTCTCCCGAGGAGGACGATACAGTGGGAAACATTGTTGAAACCCTAGCCGATGATATGCACCGCGTTTTTTCTAAGTTGGATGGCCGGTTTCCCCGTATTGATGGGACAAACAATAGGAAAAATGATGAATTTGCCTTGCCTGTAAACCTGGAAGAGGAACTGAGTTCTTTGGAGGATACGATCAGGAAATGGGAAGGTTCAGGGTTCAAGGTTGCTGGGGAAGGTTCGAATTGGAGCGAGGAGCTGGAACAAGTTTATTCATACCTACGGGCAGTTGATGACATTCAGAGTTTAGTTGATGGGCTCAGCCAGTTACCGGATGATGTGAAAGATTTGACGGTTCTGCAGCGCTTGGAAAATATTCACCATCAGGCTATGGATTGCCTCGAGGAAGAGTTTAGGGCACTTCTGGAGAAACATAGTAATGCTGTGGATCCAGATTGTGCGTTCGATTCAGCGTCCAGGGCTTCCTTTAACTCGAGTTGTGATGAGAGGGCATTTCGGAATTTGGCAGATGATGAGAAGGAGGAGGATGTGCCTGTTGCACAGCCGGTTGGTGACTTGAATTTCACGATCGATTCTCTGCCTTCTGAGATAGTTAATCAGCTAAGCGAAATTGCGGTGCGCATGGTGCGTGCCGGATACAGTACAGAGTGTTGCCAAGTTTATTGTATGATCAGGAAAATGTTTTTGGAAGAAAGCGTGATTAGGCTTGGATTTGAGAAAATGAGTATTGAGGAGGTACAAAGGATTCAATGGGAGCTACTAGAGGTCGAGATCTCGAAATGGATGCAGACTTTAAAAGTGGCAGTGAATGTCTTCATGTCCAGTGAACGAATACTCTGTGACAGAGTCTTTGTCGATTTTCCTTCGGTTTCCGAGACCTGCTTTGGGGAACTCGCGAGAGGGGTTATGATCCAATTCCTCAATTTCGGTGAAGCTGTTGCAATTAGTCGGAGGTCTCCTGAAAAGCTCTTCAAAATTCTGGACATGTATGAGACTTTATGGGATCTTATTCCCAAAATAAATCCTATATTTTCTGGTGAAGTCTGTTCAACATTGAGGTCGGAAGCTTCTGCAGTCTGGTTGCGACTTGGGGAAGCAGCACGAGGGACGTTTTCAGAACTTGAGAATGCCATCCAGGGGGATTTGGCCAAGAATCCTGTACCTGGAGGGGCAATCCATCCTCTTACTCGGTATGTTATGAATTACATGAGGCTTGCATGTGATTATAGAGATACGCTTGAGCAGGTCTTTAAACAAGATGGTGGAGCTGAAATGAATGGTGTATCGGCCAGTGCTATAGATCACTCGGATGTTCTTGAATGTCGAAATGGCACCAATAGGACAAATTTGTCACCGTTGTCTATGAAGACAATTGCAATTATGAATCTTTTAGAAAGCAATTTAAATGCAAAGTCAAAGTTATACAAAGATCCGGCCTTGAGCTATGTGTTTCTTATGAACAATGGGCGGTATATTGTTCAAAAAGTAAAAGATTCAGAGCTTCACAGTTTGTTAGGTGATGCTTGGGTGCGTCAGCATTCATCAAACGTCCGACAGTATCATAAAAGCTATCAAAGGGTTGCTTGGGGCAAGGTCCTTTCTTGTTTGAGAGACGAGGGCATCCATGTTGGTGGAAACTTCTCCAGTGGTGTCTCTAAACCTGTGCTGAAAGAAAGATTCAAAAACTTCAATGCTTTGTTTGAAGAGATTCAGAAGGCACAGTCGACTTGGATTGTTGCAGATGATCAACTTCAAACAGAGCTACGGATTTCAGTTGCCGAGATGGTTATTCCAGCGTATCGTCAATTTCTGGGCCGGTTTCAATATTACCTAGAAAATGACAGACATCCAGAAAGATATATCAAATATGGGCCTGAAGAGGTAGAGGCTTTGATCAATGAATTATTTGAAGGGGCACCAAGTTCAATGACTCGCAGAAAATCTTCAACTAACTGACACGTGTATTCATTGGTTCTTTGCAAAAATCTGATGTCTTGTGTGTGTTTTGTCTGCGATTTCCATAGTTCACATGTACCTGTAACAATTAGCCCTTGGCGGAGTCTTTGCAAGTGGTTATATTAAGGTTGTTCCTGGGTGAAGGGGCCGAGAAAGGACTCTTCCTGCCACATTAATATTTATTGTGGTTTAAATAGTCAATGCATTCACATATGAAAAACTTATGAACTATTTCTTATCCTGTATTGCAAAATTATGTAACCAAATAGCAATTTATTCATTGCATTCTGTTGCGAATGAGCACTTTAGTGAAGGGCATTATAATTTTGTGCTCATGCCTTTTTGTAAATTTTAAATGTTTATATAGTAAATTTTGAATGTTACTGTATAGTGAACTGCTTCCTATTCGA

Ace file of the UniGene sp_v3.0_unigene3615

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exocyst subunit exo70 family protein B1 [Arabidopsis thaliana] dbj\|BAB10258.1\| leucine zipper protein [Arabidopsis thaliana] gb\|AAM19847.1\| AT5g58430/mqj2_20 [Arabidopsis thaliana] gb\|AAN33202.1\| At5g58430/mqj2_20 [Arabidopsis thaliana] gb\|AED97052.1\| exo	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQZ8

Fln msg: your sequence is longer than subject: 656 - 346

Fln protein: MASPEEDDTVGNIVETLADDMHRVFSKLDGRFPRIDGTNNRKNDEFALPVNLEEELSSLEDTIRKWEGSGFKVAGEGSNWSEELEQVYSYLRAVDDIQSLVDGLSQLPDDVKDLTVLQRLENIHHQAMDCLEEEFRALLEKHSNAVDPDCAFDSASRASFNSSCDERAFRNLADDEKEEDVPVAQPVGDLNFTIDSLPSEIVNQLSEIAVRMVRAGYSTECCQVYCMIRKMFLEESVIRLGFEKMSIEEVQRIQWELLEVEISKWMQTLKVAVNVFMSSERILCDRVFVDFPSVSETCFGELARGVMIQFLNFGEAVAISRRSPEKLFKILDMYETLWDLIPKINPIFSGEVCSTLRSEASAVWLRLGEAARGTFSELENAIQGDLAKNPVPGGAIHPLTRYVMNYMRLACDYRDTLEQVFKQDGGAEMNGVSASAIDHSDVLECRNGTNRTNLSPLSMKTIAIMNLLESNLNAKSKLYKDPALSYVFLMNNGRYIVQKVKDSELHSLLGDAWVRQHSSNVRQYHKSYQRVAWGKVLSCLRDEGIHVGGNFSSGVSKPVLKERFKNFNALFEEIQKAQSTWIVADDQLQTELRISVAEMVIPAYRQFLGRFQYYLENDRHPERYIKYGPEEVEALINELFEGAPSSMTRRKSSTN*

Protein Length: 657

Fln nts: TGTCTCGAACCCTAGTTATTGCTTGCAATTTTCAAATTTAAGTTTGGAACCTCTATCCGGGATGGGGTGAACACTAGTAAGATTTGAAGAAAAAGGAAAACAGGGGTAAAAA_-_ATGGCTTCTCCCGAGGAGGACGATACAGTGGGAAACATTGTTGAAACCCTAGCCGATGATATGCACCGCGTTTTTTCTAAGTTGGATGGCCGGTTTCCCCGTATTGATGGGACAAACAATAGGAAAAATGATGAATTTGCCTTGCCTGTAAACCTGGAAGAGGAACTGAGTTCTTTGGAGGATACGATCAGGAAATGGGAAGGTTCAGGGTTCAAGGTTGCTGGGGAAGGTTCGAATTGGAGCGAGGAGCTGGAACAAGTTTATTCATACCTACGGGCAGTTGATGACATTCAGAGTTTAGTTGATGGGCTCAGCCAGTTACCGGATGATGTGAAAGATTTGACGGTTCTGCAGCGCTTGGAAAATATTCACCATCAGGCTATGGATTGCCTCGAGGAAGAGTTTAGGGCACTTCTGGAGAAACATAGTAATGCTGTGGATCCAGATTGTGCGTTCGATTCAGCGTCCAGGGCTTCCTTTAACTCGAGTTGTGATGAGAGGGCATTTCGGAATTTGGCAGATGATGAGAAGGAGGAGGATGTGCCTGTTGCACAGCCGGTTGGTGACTTGAATTTCACGATCGATTCTCTGCCTTCTGAGATAGTTAATCAGCTAAGCGAAATTGCGGTGCGCATGGTGCGTGCCGGATACAGTACAGAGTGTTGCCAAGTTTATTGTATGATCAGGAAAATGTTTTTGGAAGAAAGCGTGATTAGGCTTGGATTTGAGAAAATGAGTATTGAGGAGGTACAAAGGATTCAATGGGAGCTACTAGAGGTCGAGATCTCGAAATGGATGCAGACTTTAAAAGTGGCAGTGAATGTCTTCATGTCCAGTGAACGAATACTCTGTGACAGAGTCTTTGTCGATTTTCCTTCGGTTTCCGAGACCTGCTTTGGGGAACTCGCGAGAGGGGTTATGATCCAATTCCTCAATTTCGGTGAAGCTGTTGCAATTAGTCGGAGGTCTCCTGAAAAGCTCTTCAAAATTCTGGACATGTATGAGACTTTATGGGATCTTATTCCCAAAATAAATCCTATATTTTCTGGTGAAGTCTGTTCAACATTGAGGTCGGAAGCTTCTGCAGTCTGGTTGCGACTTGGGGAAGCAGCACGAGGGACGTTTTCAGAACTTGAGAATGCCATCCAGGGGGATTTGGCCAAGAATCCTGTACCTGGAGGGGCAATCCATCCTCTTACTCGGTATGTTATGAATTACATGAGGCTTGCATGTGATTATAGAGATACGCTTGAGCAGGTCTTTAAACAAGATGGTGGAGCTGAAATGAATGGTGTATCGGCCAGTGCTATAGATCACTCGGATGTTCTTGAATGTCGAAATGGCACCAATAGGACAAATTTGTCACCGTTGTCTATGAAGACAATTGCAATTATGAATCTTTTAGAAAGCAATTTAAATGCAAAGTCAAAGTTATACAAAGATCCGGCCTTGAGCTATGTGTTTCTTATGAACAATGGGCGGTATATTGTTCAAAAAGTAAAAGATTCAGAGCTTCACAGTTTGTTAGGTGATGCTTGGGTGCGTCAGCATTCATCAAACGTCCGACAGTATCATAAAAGCTATCAAAGGGTTGCTTGGGGCAAGGTCCTTTCTTGTTTGAGAGACGAGGGCATCCATGTTGGTGGAAACTTCTCCAGTGGTGTCTCTAAACCTGTGCTGAAAGAAAGATTCAAAAACTTCAATGCTTTGTTTGAAGAGATTCAGAAGGCACAGTCGACTTGGATTGTTGCAGATGATCAACTTCAAACAGAGCTACGGATTTCAGTTGCCGAGATGGTTATTCCAGCGTATCGTCAATTTCTGGGCCGGTTTCAATATTACCTAGAAAATGACAGACATCCAGAAAGATATATCAAATATGGGCCTGAAGAGGTAGAGGCTTTGATCAATGAATTATTTGAAGGGGCACCAAGTTCAATGACTCGCAGAAAATCTTCAACTAACTGA___CACGTGTATTCATTGGTTCTTTGCAAAAATCTGATGTCTTGTGTGTGTTTTGTCTGCGATTTCCATAGTTCACATGTACCTGTAACAATTAGCCCTTGGCGGAGTCTTTGCAAGTGGTTATATTAAGGTTGTTCCTGGGTGAAGGGGCCGAGAAAGGACTCTTCCTGCCACATTAATATTTATTGTGGTTTAAATAGTCAATGCATTCACATATGAAAAACTTATGAACTATTTCTTATCCTGTATTGCAAAATTATGTAACCAAATAGCAATTTATTCATTGCATTCTGTTGCGAATGAGCACTTTAGTGAAGGGCATTATAATTTTGTGCTCATGCCTTTTTGTAAATTTTAAATGTTTATATAGTAAATTTTGAATGTTACTGTATAGTGAACTGCTTCCTATTCGA

Fln Alignment:

Contig3615___MIQFLNFGEAVAISRRSPEKLFKILDMYETLWDLIPKINPIFSGEVCSTLRSEASAVWLRLGEAARGTFSELENAIQGDLAKNPVPGGAIHPLTRYVMNYMRLACDYRDTLEQVFKQDGGAEMNGVSASAIDHSDVLECRNGTNRTNLSPLSMKTIAIMNLLESNLNAKSKLYKDPALSYVFLMNNGRYIVQKVKDSELHSLLGDAWVRQHSSNVRQYHKSYQRVAWGKVLSCLRDEGIHVGGNFSSGVSKPVLKERFKNFNALFEEIQKAQSTWIVADDQLQTELRISVAEMVIPAYRQFLGRFQYYLENDRHPERYIKYGPEEVEALINELFEGAPSSMTRRKS
B8LQZ8______________MIQFLNFGEAVAISRRSPEKLFKILDMYETLWELIPKINSIFSGEVCSTLRSEAFAVWLRLGEAARGTFLELENAIKGDLAKNPVPGGAIHPLTRYVMNYMRLACDYRDTLEQVFKEDGGAEMNGVSARALDPSDVLEFRNGTNTTDSSPLSTKTIAIMELLESNLNAKSKLYKDPALSYVFLMNNGRYIVQKVKDSEIHSLLGDVWVRQHSSNVRRYHKSYQRVAWGKVLSCLRDEGIHVGGNFSSGVSKPVLKERFKNFNALFEELQKTQSTWIVADDQLQTELRISVAEMVIPAYRQFLGRFQYYLENDRHPERYIKYGPEEVEALINELFEGAPSSMTRRKS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
184		33		66	0.997452
503	11	88			0.923564
505		77		11	0.968132
773	33	66			0.997452
774	66			33	0.997452
776	66			33	0.997452
873			83	16	0.994512
1096	18	81			0.999994
1097		18		81	0.999994
1098	18	81			0.999994
1153		75	25		1.0
1191	71		28		1.0
1273	16			83	0.994512
1277		87	12		0.992554
1301		87		12	0.992554
1306		87	12		0.992554
1309	12	87			0.992554
1482	87		12		0.992554
1626	83	16			0.994512
1796		14		85	0.993533
2197	93		6		0.999453
2410		6		87	0.993531
2478			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain