SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3578

Length: 2569 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3578
ATGGGGGTCAGGGTGCGTTCGGGGAAGAATCCGCAGGTAACGACAGCCATTTGCCAGGGCCGACCCCATGTCAATCGAAACTTTGATTAAAAAATTGCCCCGTCGGCTCTCTATCCCTGACAACATCATCCAATGGGGAATCTCCATGTGACCATGAATGAGTAGTAGGGAGAGTTTAGCTCTATATAATGAGCCGGAGGCAGCCGCCCATCCCAACATGTGTGGAGAAGCATTTGTTGAAGTGGGTTGCGAGTAGAAATTAGCTGAGCCTCATGTCATCTTGTTTCGCTAACAGTCTTCTGAATTTTGGTTGTGTATTATCAGGCCGTATTATCTGAAATCCTTGTTTCGAGATTGGGGTGTAATTAATTCACCTTGTGAAGAAATTGGGGGTGGGATTCGATCTCTTTTCTCATGTTGCATATTGGATTGTGAATTTTGTTGATAATTCTCAGGCTGTATGATCTGAGATCCCTGTGTGAGGGCGATTGAGATATAATTGATTTATTTTCAGAAGAAATAAGGGCTGCGATTCAATCTGCTGCAACAGCTGTGGAGGAAATTTGGAGGGTTTCTTCGTTGAGAGTGCGGAGAGACGAAAATAAGTCCAATCAAGGAGAAGCAAGGTCTGTCAAGTTGTAGCAACACGGCTATTACCAGAAGTCATTTCCTTCTCCATCTCCATGACACCAGGAGAAGATTTTTGCGGAGTAGGAACGCTATCAGTGCACTAGAGACGACTACGTCGCCGCACGGAGGGAGAGGAGCTTTGCCCTCGGAAGGCGGAAGCCCTTCTGATCTCCAGTTTCTTGCAGGAGGCGGCTGTGGGCTTGCCCTTTTCTGCCTCGCCCATCCATTTCTTCTGAGCAAAGGAGAAGTTTGGGAGAGGGAGGGGTAGTTTAGTTTAGTTTAGGCGTCCATCAATCACTCGTATTACTTGTCGTTAACAACCATGTTGACCATAAAGAGATGCCCTACTATTGTGTCTAACTACCAGGAGGGTTCGGAAGGGGTTGGCTGCGGTCGTAACTGTTTAGGCCAATGCTGTGTTCCAGTCTCGAAGTTGCCTTTGTACACCTTCAGGAGAAGGCACACCATTGTTGAAGAGAAACACTTCGATAAAGATGTTGAGAGGGCAGACACTCCTTTCCTTGACAGTCTGCTTATTGGGCAGTGGGAGGAAAGGATGCAGAGGGGTCTGTTCCGCTATGATGTTACTACATGTGAAACCAAGGTCATCCCTGGTAATTATGGTTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAGAAACGTCCCACTGAATTTCGAGTGGACAAGGTGCAGCAGGACTTTGACCCCAGCAAATTCAACTTCACCAAAGTAGGCCAGGAAGAGGTGCTCTTTCGTTTTGAAGAAAGCGAGGAAGACAAAGTTCAGTACTTGGAGAAGGCCCCTGTCTTGGATAGTCCAAACGTGATTGCCATCAATGTGAGTCCAATTGAATATGGGCATGTGCTTCTCGTGCCAAGAGTATTGGACTGCTTGCCCCAACGCATTGACCATGATAGTTTACTATTAGCTTTGCATTTGGCTGCTGAGGCTGGCAACCCATCTTTTCGTCTTGGGTACAATAGCCTCGGAGCTTTTGCAACTATAAACCATCTACACTTTCAAGCTTATTATTTGGCACTTCCTTTCCCTGTTGAAAAAGCACCCACGAAAAGAGTACCATTGAAGTCTGAGAAAGGCGGGGTCAAAATCTCCAAGCTCTGCAACTATCCTGTGAGAGGCCTTGTTTTTGAAGGGGGTAATACTTTGGAGGACCTCTGCAATGCCGTTGGCAGTTCTTGCATCTGCCTTCAAGATAACAACATACCATACAATGTGCTCATTGCAGATTGTGGCAAAAGAGTTTTTCTGTTTCCTCAGTGCTATGCAGAAAAACAGGCTTTGGGAGAAGTGGATCAAGAGATATTAGACACTCAAGTGAATCCTGCTGTGTGGGAAATTAGTGGACACATCGTTTTGAAGAGAAAGCAGGATTTTGACAGGGCTTCTGAGGACTATGCATGGAAATTACTTGCTGAAGTCTCTTTGTCAGAGGAAAGATTTGAAGAAGTCGAAGCCTATATTTTGGAAGCAGTAGCTATTGCTGAAGTGCAGACTAAAGAAGAGGAAGAAGCTTCTGTTGTGGAAGATGAGGATCCTCTTCATCATTCCTTGAAGAATAACCATGATGCCCCTGTGCATTTGAATGAAGGATGCCTTGTGCTCCCGTGATCGAACTATTTACTGTCTGTTTTCATTCCTCGAAGAATAACCATAATGCCTCTGTGCATATGGATGAAGGACGCCCTATGTTCTTGTGATCAAACTATTTACTTTGTTTTTGAAAACTATTATCTGAGCAGGACCTATCTATATGCTATATATTGCATATAAAATGGTGGTTGGACATAAAATATCTATATTCACATGCTTTCTGCTTGTTATTTTTATGTAGAAGGGTACAACAATTCAGTACTTTTTTGCTGCTTTATTTTCTGGTTGGAAAATTAAACTATTTGCAGTGCTGCCATGTTACTG

Ace file of the UniGene sp_v3.0_unigene3578 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-L-galactose phosphorylase [Arabidopsis thaliana] sp\|Q8RWE8.1\|GGAP1_ARATH RecName: Full=GDP-L-galactose phosphorylase 1; AltName: Full=Protein VITAMIN C DEFECTIVE 2 gb\|AAM13137.1\| putative protein [Arabidopsis thaliana] gb\|AAP31933.1\| At4g26850 [Arabid	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G26850.1	" VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltra	67%
RefSeq	Arabidopsis thaliana	NP_567759.1	GDP-L-galactose phosphorylase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002298816.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM04

Fln msg:

Fln protein: MLTIKRCPTIVSNYQEGSEGVGCGRNCLGQCCVPVSKLPLYTFRRRHTIVEEKHFDKDVERADTPFLDSLLIGQWEERMQRGLFRYDVTTCETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVQQDFDPSKFNFTKVGQEEVLFRFEESEEDKVQYLEKAPVLDSPNVIAINVSPIEYGHVLLVPRVLDCLPQRIDHDSLLLALHLAAEAGNPSFRLGYNSLGAFATINHLHFQAYYLALPFPVEKAPTKRVPLKSEKGGVKISKLCNYPVRGLVFEGGNTLEDLCNAVGSSCICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVDQEILDTQVNPAVWEISGHIVLKRKQDFDRASEDYAWKLLAEVSLSEERFEEVEAYILEAVAIAEVQTKEEEEASVVEDEDPLHHSLKNNHDAPVHLNEGCLVLP*

Protein Length: 438

Fln nts: ATGGGGGTCAGGGTGCGTTCGGGGAAGAATCCGCAGGTAACGACAGCCATTTGCCAGGGCCGACCCCATGTCAATCGAAACTTTGATTAAAAAATTGCCCCGTCGGCTCTCTATCCCTGACAACATCATCCAATGGGGAATCTCCATGTGACCATGAATGAGTAGTAGGGAGAGTTTAGCTCTATATAATGAGCCGGAGGCAGCCGCCCATCCCAACATGTGTGGAGAAGCATTTGTTGAAGTGGGTTGCGAGTAGAAATTAGCTGAGCCTCATGTCATCTTGTTTCGCTAACAGTCTTCTGAATTTTGGTTGTGTATTATCAGGCCGTATTATCTGAAATCCTTGTTTCGAGATTGGGGTGTAATTAATTCACCTTGTGAAGAAATTGGGGGTGGGATTCGATCTCTTTTCTCATGTTGCATATTGGATTGTGAATTTTGTTGATAATTCTCAGGCTGTATGATCTGAGATCCCTGTGTGAGGGCGATTGAGATATAATTGATTTATTTTCAGAAGAAATAAGGGCTGCGATTCAATCTGCTGCAACAGCTGTGGAGGAAATTTGGAGGGTTTCTTCGTTGAGAGTGCGGAGAGACGAAAATAAGTCCAATCAAGGAGAAGCAAGGTCTGTCAAGTTGTAGCAACACGGCTATTACCAGAAGTCATTTCCTTCTCCATCTCCATGACACCAGGAGAAGATTTTTGCGGAGTAGGAACGCTATCAGTGCACTAGAGACGACTACGTCGCCGCACGGAGGGAGAGGAGCTTTGCCCTCGGAAGGCGGAAGCCCTTCTGATCTCCAGTTTCTTGCAGGAGGCGGCTGTGGGCTTGCCCTTTTCTGCCTCGCCCATCCATTTCTTCTGAGCAAAGGAGAAGTTTGGGAGAGGGAGGGGTAGTTTAGTTTAGTTTAGGCGTCCATCAATCACTCGTATTACTTGTCGTTAACAACC_-_ATGTTGACCATAAAGAGATGCCCTACTATTGTGTCTAACTACCAGGAGGGTTCGGAAGGGGTTGGCTGCGGTCGTAACTGTTTAGGCCAATGCTGTGTTCCAGTCTCGAAGTTGCCTTTGTACACCTTCAGGAGAAGGCACACCATTGTTGAAGAGAAACACTTCGATAAAGATGTTGAGAGGGCAGACACTCCTTTCCTTGACAGTCTGCTTATTGGGCAGTGGGAGGAAAGGATGCAGAGGGGTCTGTTCCGCTATGATGTTACTACATGTGAAACCAAGGTCATCCCTGGTAATTATGGTTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAGAAACGTCCCACTGAATTTCGAGTGGACAAGGTGCAGCAGGACTTTGACCCCAGCAAATTCAACTTCACCAAAGTAGGCCAGGAAGAGGTGCTCTTTCGTTTTGAAGAAAGCGAGGAAGACAAAGTTCAGTACTTGGAGAAGGCCCCTGTCTTGGATAGTCCAAACGTGATTGCCATCAATGTGAGTCCAATTGAATATGGGCATGTGCTTCTCGTGCCAAGAGTATTGGACTGCTTGCCCCAACGCATTGACCATGATAGTTTACTATTAGCTTTGCATTTGGCTGCTGAGGCTGGCAACCCATCTTTTCGTCTTGGGTACAATAGCCTCGGAGCTTTTGCAACTATAAACCATCTACACTTTCAAGCTTATTATTTGGCACTTCCTTTCCCTGTTGAAAAAGCACCCACGAAAAGAGTACCATTGAAGTCTGAGAAAGGCGGGGTCAAAATCTCCAAGCTCTGCAACTATCCTGTGAGAGGCCTTGTTTTTGAAGGGGGTAATACTTTGGAGGACCTCTGCAATGCCGTTGGCAGTTCTTGCATCTGCCTTCAAGATAACAACATACCATACAATGTGCTCATTGCAGATTGTGGCAAAAGAGTTTTTCTGTTTCCTCAGTGCTATGCAGAAAAACAGGCTTTGGGAGAAGTGGATCAAGAGATATTAGACACTCAAGTGAATCCTGCTGTGTGGGAAATTAGTGGACACATCGTTTTGAAGAGAAAGCAGGATTTTGACAGGGCTTCTGAGGACTATGCATGGAAATTACTTGCTGAAGTCTCTTTGTCAGAGGAAAGATTTGAAGAAGTCGAAGCCTATATTTTGGAAGCAGTAGCTATTGCTGAAGTGCAGACTAAAGAAGAGGAAGAAGCTTCTGTTGTGGAAGATGAGGATCCTCTTCATCATTCCTTGAAGAATAACCATGATGCCCCTGTGCATTTGAATGAAGGATGCCTTGTGCTCCCGTGA___TCGAACTATTTACTGTCTGTTTTCATTCCTCGAAGAATAACCATAATGCCTCTGTGCATATGGATGAAGGACGCCCTATGTTCTTGTGATCAAACTATTTACTTTGTTTTTGAAAACTATTATCTGAGCAGGACCTATCTATATGCTATATATTGCATATAAAATGGTGGTTGGACATAAAATATCTATATTCACATGCTTTCTGCTTGTTATTTTTATGTAGAAGGGTACAACAATTCAGTACTTTTTTGCTGCTTTATTTTCTGGTTGGAAAATTAAACTATTTGCAGTGCTGCCATGTTACTG

Fln Alignment:

Contig3578___MLTIKRCPTIVSNYQEGSEGVGCGRNCLGQCCVPVSKLPLYTFRRRHTIVEEKHFDKDVERADTPFLDSLLIGQWEERMQRGLFRYDVTTCETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVQQDFDPSKFNFTKVGQXXXXXXXXXXXEDKVQYLEKAPVLDSPNVIAINVSPIEYGHVLLVPRVLDCLPQRIDHDSXXXXXXXXXXAGNPSFRLGYNSLGAFATINHLHFQAYYLALPFPVEKAPTKRVPLKSEKGGVKISKLCNYPVRGLVFEGGNTLEDLCNAVGSSCICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVDQEILDTQVNPAVWEISGHIVLKRKQDFDRASEDYAWKLLAEVSLSEERFEEVEAYILEAVAIAEVQTKXXXXXXXXXXXDPLHHSLKNNHDAPVHLNEGCLVLP
B8LM04______________MLTIKRCPTIVSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRRHTIVGVEHVDKDVEMADTPFLDTLLIGQWEERMQRGLFRYDVTTCETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVQQDFDRSKFNFTKVGQEEVLFRFEESEEGKVQYLEKAPVLDSPNVIAINVSPIEYGHVLLVPRVLDCLPQRIDHDSLLLALHLAAEAGNPSFRLGYNSLGAFATINHLHFQAYYLALPFPVEKALTKRVPWRSEKGGVKIFELCNYPVRGLVFEGGNTLEDLCNAVGSSCICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVNQGILDTQVNPAVWEISGHIVLKRKQDFDRASEDYAWKLLAEVSLSEERFEEVKAYIFEAVASGEVQTEEEEQADVVEDEDPL-HSLKNNHDAPMHLNEGCLVLP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2343	14			85	0.993533
2494		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1657	1674	CTAAA CTAAA CTAAA CTA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain