SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3576

Length: 2118 nt

UniGene Fasta

>sp_v3.0_unigene3576
GAGACAAGTTGTGCTCGAAGATCCGTACTGGTCCGCAAAATAGTTGCCTTGAAGATTCATACTACTGCGAAAGGATCTGAGATGTCTCAACTGCTGTTACGAAGGCTCAGGGTCTCCAAATATCGTAGTGTAACAGGATTCAGTCCCTCTTTTCCAGGGCCTTGTCCAAATGGGCTTCCAATCCTTACAAAATTGGCGGATAAGCCTGAATCTACCTCCAAATTTGATCGGGGTTGGGTATGCAGTAATACTTGGGAGTGCAGAAGGATAACTACTGCCACAATAAACAGAGGCCTGAATGTCATCCCCGATACTCTCGATAAAAATAGCGAAATTTATATTCAAAATTACGAGGCGACGGAAAAGCTTTTAGCCGAGCTTCACCAGAATATTGATAAGGTGCTGAAAGGAGGGGGTCCTAAAGCAGTAGAAAGGAACCGTGCGAGGAAGAAGCTGCTGGCTAGGGAGCGCATTGACCGTGTACTGGATCCTGGATCCTCATTCCTTGAACTGTCTCAGCTTGCAGGACATGAGTTATATGAGGAGCCGTTACCCTCTGGAGGGATTGTGACAGGAATAGGGCCCGTTAATAGGAAGTTGTGTTTGTTTGTAGCCAATGACCCTACTGTCAAAGGTGGGACTTATTATCCTATCACCATTAAGAAGCATCTTCGTGCACAAGAAATTGCTGCACAGTGCAATCTACCTTGCATATATCTTGTTGATAGTGGTGGTGTTAATCTTCCAAGACAGGCAGATGTCTTTCCTGACAAAGAACATTTTGGAAGAATATTTTACAATCAGGCACAGATGTCAGCTGCAGGAATTCCACAGATTGCTTTGGTATTAGGTTCTTGCACTGCTGGAGGGGCTTATATTCCTGCAATGGCCGATGAAAATGTTCTTGTCAAAGGCAACGGCACTATTTTTTTAGCTGGACCTCCTCTTGTCAAGGCTGCAACTGGAGAAGAAGTGTCTGCAGAGGATTTAGGAGGTGCTTCAGTGCATTGTAAAATCTCTGGAGTTTCTGATTATTATGCCAATGATGAACTGCACGCACTTGACATTGGAAGGAGAATAGTGAAAAACTTGCATATGGCTGGAAATGAGGAGAAAATCAAAGGTTGGACATGTCCTATTTCTGAAGATGAGGAACCTTTATATGATGCAAAGGAGCTTCGTGGCATTGTGTCTGCAGATCGTAAACAGTCATTTGATGTCCGTTCTATAATTGCTCGCATAGTTGATGGAAGTGTATTTGATGAATTCAAGAAGCTATATGGCACAACTCTTGTTACAGGTTTTGCAAGAATCTATGGACAGCCTGTAGGCATAATTGGAAACAATGGCATTTTATTCACAGAATCTGCTCTAAAAGGTGCTCACTTCATACAGCTATGTACACAGCGCCAGATTCCCTTGATATTTCTTCAGAATATCACAGGATTTATGGTTGGCTCAAGATCAGAAGCAAGCGGTATTGCCAAGGCAGGAGCGAAGATGGTGATGGCAGTTTCCTGTGCAAAGGTTCCAAAGATTACAATTATAGTTGGAGGCAGCTTTGGGGCTGGGAATTATGGAATGTGTGGACGTGCATACAATCCCAATTTTTTGTTTCTTTGGCCCACAGCCCGAATTTCAGTCATGGGAGGTGCCCAGGCTGCTGGAGTTCTTGCTCAAATTGAAAGGGACAATCGCAAGCGACAGGGTATTCAGTGGAGCACAGAGGAGGAAGAAGCCTTAAAAGCCAAGGTGACAGAGTCTTATGAAAGAGAAGGAAATCCATATTATGCAACTGCAAGACTCTGGGATGATGGCATTATTGATCCTGCAGATACAAGAACGGTTTTAGGTTTGGCTTTATCTGCTTCAAAACAAGACGCTTCTGTTAAAACAACATACGGTGTTTTTAGGATGTAAGTGGAAAAGCACTGTGGTGCCAAGAAAGTTGTTGTAAGGCATCAATAAAAGTTCAAAACTTCAAAATTTGTAAATACATTGTTTGAACTAATGGTAAAATTTTCCAGCAATTCCATAAAGTTTTTCAGAAACAAATACCTTTCATGGAAAGTCTTAAGACAGTCAAAGTCGTAATATTTGTTCTTTCAAAAGTACACA

Ace file of the UniGene sp_v3.0_unigene3576

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor [Oryza sativa Japonica Group]	-	-	0.0	76%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
Sma3	Propionyl-CoA carboxylase.	EC:6.4.1.3	-	6.498e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Valine, leucine and isoleucine degradation	00280	6.498e-09	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	6.498e-09	%
Sma3	Propanoate metabolism	00640	6.498e-09	%
Sma3	Carbon fixation pathways in prokaryotes	00720	6.498e-09	%
Sma3	Metabolic pathways	01100	6.498e-09	%

Source	Gene names
Sma3	05K17.1; At4g34030; CHLREDRAFT_24506; F17I5.220; F28A23.210; GSVIVT00036606001; MCCB; OSJNBa0056L09.27; Os08g0424200; OsI_29286; OsJ_27365; PCB1; PHATRDRAFT_19329; PHYPADRAFT_208593; POPTRDRAFT_267877; POPTRDRAFT_557395; RCOM_0813260; THAPSDRAFT_269328; V

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	leucine catabolic process	GO:0006552	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34030.1	MCCB 3-methylcrotonyl-CoA carboxylase chr4:16301298-16303949 FORWARD LENGTH=587	75%
RefSeq	Arabidopsis thaliana	NP_567950.1	methylcrotonoyl-CoA carboxylase beta chain [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002313120.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LDD8

Fln msg:

Fln protein: MSQLLLRRLRVSKYRSVTGFSPSFPGPCPNGLPILTKLADKPESTSKFDRGWVCSNTWECRRITTATINRGLNVIPDTLDKNSEIYIQNYEATEKLLAELHQNIDKVLKGGGPKAVERNRARKKLLARERIDRVLDPGSSFLELSQLAGHELYEEPLPSGGIVTGIGPVNRKLCLFVANDPTVKGGTYYPITIKKHLRAQEIAAQCNLPCIYLVDSGGVNLPRQADVFPDKEHFGRIFYNQAQMSAAGIPQIALVLGSCTAGGAYIPAMADENVLVKGNGTIFLAGPPLVKAATGEEVSAEDLGGASVHCKISGVSDYYANDELHALDIGRRIVKNLHMAGNEEKIKGWTCPISEDEEPLYDAKELRGIVSADRKQSFDVRSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIQLCTQRQIPLIFLQNITGFMVGSRSEASGIAKAGAKMVMAVSCAKVPKITIIVGGSFGAGNYGMCGRAYNPNFLFLWPTARISVMGGAQAAGVLAQIERDNRKRQGIQWSTEEEEALKAKVTESYEREGNPYYATARLWDDGIIDPADTRTVLGLALSASKQDASVKTTYGVFRM*

Protein Length: 614

Fln nts: GAGACAAGTTGTGCTCGAAGATCCGTACTGGTCCGCAAAATAGTTGCCTTGAAGATTCATACTACTGCGAAAGGATCTGAG_-_ATGTCTCAACTGCTGTTACGAAGGCTCAGGGTCTCCAAATATCGTAGTGTAACAGGATTCAGTCCCTCTTTTCCAGGGCCTTGTCCAAATGGGCTTCCAATCCTTACAAAATTGGCGGATAAGCCTGAATCTACCTCCAAATTTGATCGGGGTTGGGTATGCAGTAATACTTGGGAGTGCAGAAGGATAACTACTGCCACAATAAACAGAGGCCTGAATGTCATCCCCGATACTCTCGATAAAAATAGCGAAATTTATATTCAAAATTACGAGGCGACGGAAAAGCTTTTAGCCGAGCTTCACCAGAATATTGATAAGGTGCTGAAAGGAGGGGGTCCTAAAGCAGTAGAAAGGAACCGTGCGAGGAAGAAGCTGCTGGCTAGGGAGCGCATTGACCGTGTACTGGATCCTGGATCCTCATTCCTTGAACTGTCTCAGCTTGCAGGACATGAGTTATATGAGGAGCCGTTACCCTCTGGAGGGATTGTGACAGGAATAGGGCCCGTTAATAGGAAGTTGTGTTTGTTTGTAGCCAATGACCCTACTGTCAAAGGTGGGACTTATTATCCTATCACCATTAAGAAGCATCTTCGTGCACAAGAAATTGCTGCACAGTGCAATCTACCTTGCATATATCTTGTTGATAGTGGTGGTGTTAATCTTCCAAGACAGGCAGATGTCTTTCCTGACAAAGAACATTTTGGAAGAATATTTTACAATCAGGCACAGATGTCAGCTGCAGGAATTCCACAGATTGCTTTGGTATTAGGTTCTTGCACTGCTGGAGGGGCTTATATTCCTGCAATGGCCGATGAAAATGTTCTTGTCAAAGGCAACGGCACTATTTTTTTAGCTGGACCTCCTCTTGTCAAGGCTGCAACTGGAGAAGAAGTGTCTGCAGAGGATTTAGGAGGTGCTTCAGTGCATTGTAAAATCTCTGGAGTTTCTGATTATTATGCCAATGATGAACTGCACGCACTTGACATTGGAAGGAGAATAGTGAAAAACTTGCATATGGCTGGAAATGAGGAGAAAATCAAAGGTTGGACATGTCCTATTTCTGAAGATGAGGAACCTTTATATGATGCAAAGGAGCTTCGTGGCATTGTGTCTGCAGATCGTAAACAGTCATTTGATGTCCGTTCTATAATTGCTCGCATAGTTGATGGAAGTGTATTTGATGAATTCAAGAAGCTATATGGCACAACTCTTGTTACAGGTTTTGCAAGAATCTATGGACAGCCTGTAGGCATAATTGGAAACAATGGCATTTTATTCACAGAATCTGCTCTAAAAGGTGCTCACTTCATACAGCTATGTACACAGCGCCAGATTCCCTTGATATTTCTTCAGAATATCACAGGATTTATGGTTGGCTCAAGATCAGAAGCAAGCGGTATTGCCAAGGCAGGAGCGAAGATGGTGATGGCAGTTTCCTGTGCAAAGGTTCCAAAGATTACAATTATAGTTGGAGGCAGCTTTGGGGCTGGGAATTATGGAATGTGTGGACGTGCATACAATCCCAATTTTTTGTTTCTTTGGCCCACAGCCCGAATTTCAGTCATGGGAGGTGCCCAGGCTGCTGGAGTTCTTGCTCAAATTGAAAGGGACAATCGCAAGCGACAGGGTATTCAGTGGAGCACAGAGGAGGAAGAAGCCTTAAAAGCCAAGGTGACAGAGTCTTATGAAAGAGAAGGAAATCCATATTATGCAACTGCAAGACTCTGGGATGATGGCATTATTGATCCTGCAGATACAAGAACGGTTTTAGGTTTGGCTTTATCTGCTTCAAAACAAGACGCTTCTGTTAAAACAACATACGGTGTTTTTAGGATGTAA___GTGGAAAAGCACTGTGGTGCCAAGAAAGTTGTTGTAAGGCATCAATAAAAGTTCAAAACTTCAAAATTTGTAAATACATTGTTTGAACTAATGGTAAAATTTTCCAGCAATTCCATAAAGTTTTTCAGAAACAAATACCTTTCATGGAAAGTCTTAAGACAGTCAAAGTCGTAATATTTGTTCTTTCAAAAGTACACA

Fln Alignment:

Contig3576___LNVIPDTLDKNSEIYIQNYEATEKLLAELHQNIDKVLKGGGPKAVERNRARKKLLARERIDRVLDPGSSFLELSQLAGHELYEEPLPSGGIVTGIGPVNRKLCLFVANDPTVKGGTYYPITIKKHLRAQEIAAQCNLPCIYLVDSGGVNLPRQADVFPDKEHFGRIFYNQAQMSAAGIPQIALVLGSCTAGGAYIPAMADENVLVKGNGTIFLAGPPLVKAATGEEVSAEDLGGASVHCKISGVSDYYANDELHALDIGRRIVKNLHMAGNEEKIKGWTCPISEDEEPLYDAKELRGIVSADRKQSFDVRSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGNNGILFTESALKGAHFIQLCTQRQIPLIFLQNITGFMVGSRSEASGIAKAGAKMVMAVSCAKVPKITIIVGGSFGAGNYGMCGRAYNPNFLFLWPTARISVMGGAQAAGVLAQIERDNRKRQGIQWSTEEEEALKAKVTESYEREGNPYYATARLWDDGIIDPADTRTVLGLALSASKQDASVKTTYGVFRM
Q9LDD8______________VGILPDGVDRNSEAFSSNSIAMEGILSELRSHIKKVLAGGGEEAVKRNRSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGIITGIGPIHGRICMFMANDPTVKGGTYYPITIKKHLRAQEIAARCRLPCIYLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMSSDGIPQIAIVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCTVSGVSDYFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELRSIAPVDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGNNGILFNESALKGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKITIITGASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNRPLEDTRFGVFRM

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1033	80			20	0.995493
1034	20			80	0.995493
1101			80	20	0.995493
1178	25		75		0.996473
1215	16			83	0.994512
1235	20			80	0.995493
1236		20	80		0.995493
1237	20	80			0.995493
1239		80		20	0.995493
1348	87			12	0.992554
1391		75		25	1.0
1400	50		50		1.0
1500	90			10	0.90298
1501	90	10			0.90298
1506	10		90		0.90298
1507		10		90	0.90298
1508		10	90		0.90298
1509	88			11	0.923564
1514	88			11	0.923564
1517		11		88	0.923564
1520	11	88			0.923564
1524	11		88		0.923564
1527	88			11	0.923564
1528	88			11	0.923564
1590	12		87		0.992554
1633		75		25	0.996473
1751	14	85			0.993533
1846	20	80			0.995493
1988	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain