SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3575

Length: 2207 nt

UniGene Fasta

>sp_v3.0_unigene3575
CAGATCTGGTGGCATGGCATGGGTTCAGGGGAATTCTTCATCCAGGCTGGGATTTGAGCAAGAAAGCAAGGCCGTGCCAATTACAATGCCCATTGAAGAAAACACAGTTTCCAGCTTTTTTGTTCTTGTGGATCTGCTCATCTGCACATGAAAATGACGTTAACACCAAAGAAACATGGAAATATCATGAATGGTTCAAGAAGAAAAGGGCGTTGCCTGCAGTTCGATAGATGGCTTTCTCTGTCAGCAGCAATGATCCTTATGGGATGCAGTGGGTTAACATACACTTATGCTGTTTATAGCGAACATATCAAAATAAAATTTCACTACACTCAAGAGCAGATTGACAATATTGGAGCTGCTAAAGACTTTGGAGCTTTTGTTGCTCTGGTTTCTGGCTTTTTTTACAACTTTTACGCACCATGGGTCACTGTGTACATTGGGGCACTTCTGCGAGTATTTGGCTATGGTCTGATGTGGATGACGATTGCAGATGATACTCCAAGATCTATATGGATGCTGTGCTTGTATGTGGCATTGGGAACTGGTGGAGATGGTTGGATTGACACAGCCTGCATGATGACCAGTGTGGAAAACTTTGAGGATCATCGGGGCACAGCAATGGGTATATTAAAGTCTCAGCTTGGGTTGAGTGGTGCCATGTTTGTAACTATTTATCAAGCTTTTCTGCAGCCTGATGTAAACAAATTTCTCCTTTTGATTGCTGTTGTACCAACTGTTCTTTACTTGCTGCTGGGATTCCTTATCAGCCCATCAACTCAAACTGAAAAGTACAGGGATATAAGAGGCACCATGTTGCGATTCAAAGTTATATATGGCATGATTGTGCTCCTAGCTATATTCCTTACATTGTCAATGATTATTCAGGCTAAATTTCATGCTGGAAATGGCACCAGTGGTTTTTTTGCAATTCTCATGTTAATCATCATCGCTGTAATGTATGCTGTTCCGGTGGTTCAAAAGCCCCTTAGTTCTGGAAGATATGTTTCTAGTCCAAAGAATTCTCTAGTTAAGGAGATTGATCTGATCCCAAATCCTGTGAGATCTCTTAATCACACAAAGTCTTTGGATTTAAAATCTGAATCACATGCTGGAGACTGTGAAACAGAAATATTTCCTTTGAAGGTGGTTCCTGGGTTTATTGAAGAAGAACTGGTGGAATCATCTGAGCCTGGTAATGTAAAAGAATGTATTGAGGCCCAGAACATTGTTGATCTCACAGTTTGGGAATGTCTCGTTGCAGTTGACTTTTGGCTTGTCAATTTTGTGGTTGTAAGTGGTGGAGGTAGTGGGCTTGCTATCATAAATAATTTTGCTCAGATTGGAAGTGCTGCAAGAAGCGAAGAGGTGGGCCTTTATGTGGGAATCATTAGTGTTGGGAGCTGCTTTGGTCGAATAACATCTGGGTATGCTTCTGATTTTCTCATGAGGAGTGGATATCCCCGCCCATTATGTCTGCTGATCACTCAAATCATAATGACATTATCTTGTATACTTCTTGCTACTGGGGATGTCTTTTTTCTTTACATTGGTTCCGCCCTTATTGGTATGGCATATGGTGCATACTGGACTCTGTCCCCAGCTGTTCTATCAGAAATATTTGGAATGAAGTCCTTTGCAATACTGTACAAGATAATTGGGATATGTCCAACCATTGGTTCATATGTACTTTCTGCAAAGATTCTAGGAGTTCTTTATGACAAACAGGCTGCTTTGTATCATCACAATACTACAGAGGAGACTATGCAGCGAGAGGTGAATGCATGCTATGGTCGGCAATGCTTTGGTTCTGCTTTGCTTTATCTTTCTTTGATTTGCTTCATTGGTGGTTTGGCCTGCTTATGGTTGATAAAACGTACCAATAGGTTGTATAGTAGAAGATATCAGCTTTTGTGCTCTTCAGCAAACTGAAAGTAGCTAGTTTTGTTTATCATTAACCTGACATGCAAGGCATAGTTGTAACCTGTTTTAACCTACGCCTTCTATGAATATGATTATGGGTATTTAACCTATGCCTCTCATGAATATGAGCATGAGTACATGGCATGTAAACATGTACAGCGAGTTATTTATAGGTTGCTCATGCACAAATATGAAAGATACGACCAAATAGTGATGTTCTCAATAACAAATGATGATGAATATTCTGAATTTCTAGCTCTGAACAAGACTATTGACCAATGATA

Ace file of the UniGene sp_v3.0_unigene3575

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] dbj\|BAB08291.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AED91990.1\| major facilitator protein [Arabidopsis thaliana]	-	-	0.0	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%

Source	Gene names
Sma3	PHYPADRAFT_135935; PHYPADRAFT_135938; PHYPADRAFT_172246; PHYPADRAFT_172531;

Source	InterPros	Term	Type	e value	Identity
Sma3	Nodulin-like	IPR010658	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 595 - 626

Fln protein: MKMTLTPKKHGNIMNGSRRKGRCLQFDRWLSLSAAMILMGCSGLTYTYAVYSEHIKIKFHYTQEQIDNIGAAKDFGAFVALVSGFFYNFYAPWVTVYIGALLRVFGYGLMWMTIADDTPRSIWMLCLYVALGTGGDGWIDTACMMTSVENFEDHRGTAMGILKSQLGLSGAMFVTIYQAFLQPDVNKFLLLIAVVPTVLYLLLGFLISPSTQTEKYRDIRGTMLRFKVIYGMIVLLAIFLTLSMIIQAKFHAGNGTSGFFAILMLIIIAVMYAVPVVQKPLSSGRYVSSPKNSLVKEIDLIPNPVRSLNHTKSLDLKSESHAGDCETEIFPLKVVPGFIEEELVESSEPGNVKECIEAQNIVDLTVWECLVAVDFWLVNFVVVSGGGSGLAIINNFAQIGSAARSEEVGLYVGIISVGSCFGRITSGYASDFLMRSGYPRPLCLLITQIIMTLSCILLATGDVFFLYIGSALIGMAYGAYWTLSPAVLSEIFGMKSFAILYKIIGICPTIGSYVLSAKILGVLYDKQAALYHHNTTEETMQREVNACYGRQCFGSALLYLSLICFIGGLACLWLIKRTNRLYSRRYQLLCSSAN*

Protein Length: 596

Fln nts: CAGATCTGGTGGCATGGCATGGGTTCAGGGGAATTCTTCATCCAGGCTGGGATTTGAGCAAGAAAGCAAGGCCGTGCCAATTACAATGCCCATTGAAGAAAACACAGTTTCCAGCTTTTTTGTTCTTGTGGATCTGCTCATCTGCAC_-_ATGAAAATGACGTTAACACCAAAGAAACATGGAAATATCATGAATGGTTCAAGAAGAAAAGGGCGTTGCCTGCAGTTCGATAGATGGCTTTCTCTGTCAGCAGCAATGATCCTTATGGGATGCAGTGGGTTAACATACACTTATGCTGTTTATAGCGAACATATCAAAATAAAATTTCACTACACTCAAGAGCAGATTGACAATATTGGAGCTGCTAAAGACTTTGGAGCTTTTGTTGCTCTGGTTTCTGGCTTTTTTTACAACTTTTACGCACCATGGGTCACTGTGTACATTGGGGCACTTCTGCGAGTATTTGGCTATGGTCTGATGTGGATGACGATTGCAGATGATACTCCAAGATCTATATGGATGCTGTGCTTGTATGTGGCATTGGGAACTGGTGGAGATGGTTGGATTGACACAGCCTGCATGATGACCAGTGTGGAAAACTTTGAGGATCATCGGGGCACAGCAATGGGTATATTAAAGTCTCAGCTTGGGTTGAGTGGTGCCATGTTTGTAACTATTTATCAAGCTTTTCTGCAGCCTGATGTAAACAAATTTCTCCTTTTGATTGCTGTTGTACCAACTGTTCTTTACTTGCTGCTGGGATTCCTTATCAGCCCATCAACTCAAACTGAAAAGTACAGGGATATAAGAGGCACCATGTTGCGATTCAAAGTTATATATGGCATGATTGTGCTCCTAGCTATATTCCTTACATTGTCAATGATTATTCAGGCTAAATTTCATGCTGGAAATGGCACCAGTGGTTTTTTTGCAATTCTCATGTTAATCATCATCGCTGTAATGTATGCTGTTCCGGTGGTTCAAAAGCCCCTTAGTTCTGGAAGATATGTTTCTAGTCCAAAGAATTCTCTAGTTAAGGAGATTGATCTGATCCCAAATCCTGTGAGATCTCTTAATCACACAAAGTCTTTGGATTTAAAATCTGAATCACATGCTGGAGACTGTGAAACAGAAATATTTCCTTTGAAGGTGGTTCCTGGGTTTATTGAAGAAGAACTGGTGGAATCATCTGAGCCTGGTAATGTAAAAGAATGTATTGAGGCCCAGAACATTGTTGATCTCACAGTTTGGGAATGTCTCGTTGCAGTTGACTTTTGGCTTGTCAATTTTGTGGTTGTAAGTGGTGGAGGTAGTGGGCTTGCTATCATAAATAATTTTGCTCAGATTGGAAGTGCTGCAAGAAGCGAAGAGGTGGGCCTTTATGTGGGAATCATTAGTGTTGGGAGCTGCTTTGGTCGAATAACATCTGGGTATGCTTCTGATTTTCTCATGAGGAGTGGATATCCCCGCCCATTATGTCTGCTGATCACTCAAATCATAATGACATTATCTTGTATACTTCTTGCTACTGGGGATGTCTTTTTTCTTTACATTGGTTCCGCCCTTATTGGTATGGCATATGGTGCATACTGGACTCTGTCCCCAGCTGTTCTATCAGAAATATTTGGAATGAAGTCCTTTGCAATACTGTACAAGATAATTGGGATATGTCCAACCATTGGTTCATATGTACTTTCTGCAAAGATTCTAGGAGTTCTTTATGACAAACAGGCTGCTTTGTATCATCACAATACTACAGAGGAGACTATGCAGCGAGAGGTGAATGCATGCTATGGTCGGCAATGCTTTGGTTCTGCTTTGCTTTATCTTTCTTTGATTTGCTTCATTGGTGGTTTGGCCTGCTTATGGTTGATAAAACGTACCAATAGGTTGTATAGTAGAAGATATCAGCTTTTGTGCTCTTCAGCAAACTGA___AAGTAGCTAGTTTTGTTTATCATTAACCTGACATGCAAGGCATAGTTGTAACCTGTTTTAACCTACGCCTTCTATGAATATGATTATGGGTATTTAACCTATGCCTCTCATGAATATGAGCATGAGTACATGGCATGTAAACATGTACAGCGAGTTATTTATAGGTTGCTCATGCACAAATATGAAAGATACGACCAAATAGTGATGTTCTCAATAACAAATGATGATGAATATTCTGAATTTCTAGCTCTGAACAAGACTATTGACCAATGATA

Fln Alignment:

Contig3575___SRRKGRCLQFDRWLSLSAAMILMGCSGLTYTYAVYSEHIKIKFHYTQEQIDNIGAAKDFGAFVALVSGFFYNFYAPWVTVYIGALLRVFGYGLMWMTIADDT-PRSIWMLCLYVALGTGGDGWIDTACMMTSVENFEDHRGTAMGILKSQLGLSGAMFVTIYQAFLQPDVNKFLLLIAVVPTVLYLLLGFLISPSTQTEKYRDIRGTMLRFKVIYGMIVLLAIFLTLSMIIQAKFHAGNGTSGFFAILMLIIIAVMYAVPV---VQKPLSSG---------------------RYVSSPKNSLVKEIDLIPNPVRSLNHTKSLDLKSESHAGDCE---TEIFPLKVVPGFIEEELVESSEPGNVKECIEAQNI-VDLTVWECLVAVDFWLVNFXXXXXXXXXLAIINNFAQIGSAARSEEVGLYVGIISVGSCFGRITSGYASD-FLMRSGYPRPLCLLITQIIMTLSCILLATGDVFFLYIGSALIGMAYGAYWTLSPAVLSEIFGMKSFAILYKIIGICPTIGSYVLSAKILGVLYDKQAALYHHNTTE----------ETMQREVNACYGRQCFGSALLYLSLICFIGGLACLWLIKRTNRLYS
B8LRH5______________SRRSGSVI---KWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDVNQVQLNNLSVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAITVAVYL-LAFDITGKH--GIVLSRTFAGFLLVLLAAPLVVPLKLFIKEKNSRGEQLIPSFWKWKSANTQFLDIEKQVREPLLTNVEEAKGAENPETSVQ-AKAESIATEPRPSQSESVATEPWPSQSESVTTEPRPSQSESVENQIVCNSKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFVDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
435			75	25	1.0
590		12		87	0.992554
671	80			20	0.995493
673		80		20	0.995493
787		50		50	1.0
1506	25			75	0.996473
1507		25		75	0.996473
1510		75	25		0.996473
1511			25	75	0.996473
1512			25	75	0.996473
1550		80		20	0.995493
1589	11	88			0.923564
1592			88	11	0.923564
1593	88		11		0.923564
1597	11			88	0.923564
1805	11	88			0.999937
1806		11	5	83	0.999887
1808		16		83	1.0
1809	11		88		0.999952
1822		11		88	0.999937
1835		11	88		0.999952
1914		11		88	0.923564
1915	11			88	0.923564
2134	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain